data_2XMG # _model_server_result.job_id UcjkECupU3nXi7TDGWRfiA _model_server_result.datetime_utc '2024-11-22 11:18:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":1556}' # _entry.id 2XMG # _exptl.entry_id 2XMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 18.038 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMMONIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XMG _cell.length_a 156.57 _cell.length_b 156.57 _cell.length_c 128.39 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 6 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 R N N ? 8 W N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUL NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1544 NAG 2 n B NAG 2 B 2 NAG A 1545 NAG 2 n B FUL 3 B 3 FUL A 1546 FUL 3 n C NAG 1 C 1 NAG A 1547 NAG 3 n C FUL 2 C 2 FUL A 1548 FUL 2 n D NAG 1 D 1 NAG A 1552 NAG 2 n D NAG 2 D 2 NAG A 1553 NAG 2 n D FUL 3 D 3 FUL A 1554 FUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 S C1 NAG . A NAG 1549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale3 A OG SER 198 A SER 198 1_555 L P1 VX . A VX 1530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? covale ? covale4 A ND2 ASN 241 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale5 A ND2 ASN 256 A ASN 256 1_555 U C1 NAG . A NAG 1551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 A ND2 ASN 341 A ASN 341 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 A ND2 ASN 485 A ASN 485 1_555 T C1 NAG . A NAG 1550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.56 ? covale ? covale8 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 B O6 NAG . B NAG 1 1_555 B C1 FUL . B FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 C O6 NAG . C NAG 1 1_555 C C1 FUL . C FUL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale12 D O6 NAG . D NAG 1 1_555 D C1 FUL . D FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'H4 N 1' _chem_comp.formula_weight 18.038 _chem_comp.id NH4 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMMONIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N HN1 NH4 sing 290 n n N HN2 NH4 sing 291 n n N HN3 NH4 sing 292 n n N HN4 NH4 sing 293 n n # _atom_sites.entry_id 2XMG _atom_sites.fract_transf_matrix[1][1] 0.006387 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 UNX A 1 1536 1536 UNX UNX . F 4 UNX A 1 1537 1537 UNX UNX . G 4 UNX A 1 1538 1538 UNX UNX . H 4 UNX A 1 1539 1539 UNX UNX . I 4 UNX A 1 1540 1540 UNX UNX . J 4 UNX A 1 1541 1541 UNX UNX . K 4 UNX A 1 1542 1542 UNX UNX . L 5 VX A 1 1530 1530 VX VX . M 6 SO4 A 1 1531 1531 SO4 SO4 . N 7 CL A 1 1532 1532 CL CL . O 7 CL A 1 1533 1533 CL CL . P 7 CL A 1 1534 1534 CL CL . Q 7 CL A 1 1535 1535 CL CL . R 8 NH4 A 1 1543 1543 NH4 NH4 . S 9 NAG A 1 1549 1549 NAG NAG . T 9 NAG A 1 1550 1550 NAG NAG . U 9 NAG A 1 1551 1551 NAG NAG . V 7 CL A 1 1555 1555 CL CL . W 8 NH4 A 1 1556 1556 NH4 NH4 . X 10 HOH A 1 2001 2001 HOH HOH . X 10 HOH A 2 2002 2002 HOH HOH . X 10 HOH A 3 2003 2003 HOH HOH . X 10 HOH A 4 2004 2004 HOH HOH . X 10 HOH A 5 2005 2005 HOH HOH . X 10 HOH A 6 2006 2006 HOH HOH . X 10 HOH A 7 2007 2007 HOH HOH . X 10 HOH A 8 2008 2008 HOH HOH . X 10 HOH A 9 2009 2009 HOH HOH . X 10 HOH A 10 2010 2010 HOH HOH . X 10 HOH A 11 2011 2011 HOH HOH . X 10 HOH A 12 2012 2012 HOH HOH . X 10 HOH A 13 2013 2013 HOH HOH . X 10 HOH A 14 2014 2014 HOH HOH . X 10 HOH A 15 2015 2015 HOH HOH . X 10 HOH A 16 2016 2016 HOH HOH . X 10 HOH A 17 2017 2017 HOH HOH . X 10 HOH A 18 2018 2018 HOH HOH . X 10 HOH A 19 2019 2019 HOH HOH . X 10 HOH A 20 2020 2020 HOH HOH . X 10 HOH A 21 2021 2021 HOH HOH . X 10 HOH A 22 2022 2022 HOH HOH . X 10 HOH A 23 2023 2023 HOH HOH . X 10 HOH A 24 2024 2024 HOH HOH . X 10 HOH A 25 2025 2025 HOH HOH . X 10 HOH A 26 2026 2026 HOH HOH . X 10 HOH A 27 2027 2027 HOH HOH . X 10 HOH A 28 2028 2028 HOH HOH . X 10 HOH A 29 2029 2029 HOH HOH . X 10 HOH A 30 2030 2030 HOH HOH . X 10 HOH A 31 2031 2031 HOH HOH . X 10 HOH A 32 2032 2032 HOH HOH . X 10 HOH A 33 2033 2033 HOH HOH . X 10 HOH A 34 2034 2034 HOH HOH . X 10 HOH A 35 2035 2035 HOH HOH . X 10 HOH A 36 2036 2036 HOH HOH . X 10 HOH A 37 2037 2037 HOH HOH . X 10 HOH A 38 2038 2038 HOH HOH . X 10 HOH A 39 2039 2039 HOH HOH . X 10 HOH A 40 2040 2040 HOH HOH . X 10 HOH A 41 2041 2041 HOH HOH . X 10 HOH A 42 2042 2042 HOH HOH . X 10 HOH A 43 2043 2043 HOH HOH . X 10 HOH A 44 2044 2044 HOH HOH . X 10 HOH A 45 2045 2045 HOH HOH . X 10 HOH A 46 2046 2046 HOH HOH . X 10 HOH A 47 2047 2047 HOH HOH . X 10 HOH A 48 2048 2048 HOH HOH . X 10 HOH A 49 2049 2049 HOH HOH . X 10 HOH A 50 2050 2050 HOH HOH . X 10 HOH A 51 2051 2051 HOH HOH . X 10 HOH A 52 2052 2052 HOH HOH . X 10 HOH A 53 2053 2053 HOH HOH . X 10 HOH A 54 2054 2054 HOH HOH . X 10 HOH A 55 2055 2055 HOH HOH . X 10 HOH A 56 2056 2056 HOH HOH . X 10 HOH A 57 2057 2057 HOH HOH . X 10 HOH A 58 2058 2058 HOH HOH . X 10 HOH A 59 2059 2059 HOH HOH . X 10 HOH A 60 2060 2060 HOH HOH . X 10 HOH A 61 2061 2061 HOH HOH . X 10 HOH A 62 2062 2062 HOH HOH . X 10 HOH A 63 2063 2063 HOH HOH . X 10 HOH A 64 2064 2064 HOH HOH . X 10 HOH A 65 2065 2065 HOH HOH . X 10 HOH A 66 2066 2066 HOH HOH . X 10 HOH A 67 2067 2067 HOH HOH . X 10 HOH A 68 2068 2068 HOH HOH . X 10 HOH A 69 2069 2069 HOH HOH . X 10 HOH A 70 2070 2070 HOH HOH . X 10 HOH A 71 2071 2071 HOH HOH . X 10 HOH A 72 2072 2072 HOH HOH . X 10 HOH A 73 2073 2073 HOH HOH . X 10 HOH A 74 2074 2074 HOH HOH . X 10 HOH A 75 2075 2075 HOH HOH . X 10 HOH A 76 2076 2076 HOH HOH . X 10 HOH A 77 2077 2077 HOH HOH . X 10 HOH A 78 2078 2078 HOH HOH . X 10 HOH A 79 2079 2079 HOH HOH . X 10 HOH A 80 2080 2080 HOH HOH . X 10 HOH A 81 2081 2081 HOH HOH . X 10 HOH A 82 2082 2082 HOH HOH . X 10 HOH A 83 2083 2083 HOH HOH . X 10 HOH A 84 2084 2084 HOH HOH . X 10 HOH A 85 2085 2085 HOH HOH . X 10 HOH A 86 2086 2086 HOH HOH . X 10 HOH A 87 2087 2087 HOH HOH . X 10 HOH A 88 2088 2088 HOH HOH . X 10 HOH A 89 2089 2089 HOH HOH . X 10 HOH A 90 2090 2090 HOH HOH . X 10 HOH A 91 2091 2091 HOH HOH . X 10 HOH A 92 2092 2092 HOH HOH . X 10 HOH A 93 2093 2093 HOH HOH . X 10 HOH A 94 2094 2094 HOH HOH . X 10 HOH A 95 2095 2095 HOH HOH . X 10 HOH A 96 2096 2096 HOH HOH . X 10 HOH A 97 2097 2097 HOH HOH . X 10 HOH A 98 2098 2098 HOH HOH . X 10 HOH A 99 2099 2099 HOH HOH . X 10 HOH A 100 2100 2100 HOH HOH . X 10 HOH A 101 2101 2101 HOH HOH . X 10 HOH A 102 2102 2102 HOH HOH . X 10 HOH A 103 2103 2103 HOH HOH . X 10 HOH A 104 2104 2104 HOH HOH . X 10 HOH A 105 2105 2105 HOH HOH . X 10 HOH A 106 2106 2106 HOH HOH . X 10 HOH A 107 2107 2107 HOH HOH . X 10 HOH A 108 2108 2108 HOH HOH . X 10 HOH A 109 2109 2109 HOH HOH . X 10 HOH A 110 2110 2110 HOH HOH . X 10 HOH A 111 2111 2111 HOH HOH . X 10 HOH A 112 2112 2112 HOH HOH . X 10 HOH A 113 2113 2113 HOH HOH . X 10 HOH A 114 2114 2114 HOH HOH . X 10 HOH A 115 2115 2115 HOH HOH . X 10 HOH A 116 2116 2116 HOH HOH . X 10 HOH A 117 2117 2117 HOH HOH . X 10 HOH A 118 2118 2118 HOH HOH . X 10 HOH A 119 2119 2119 HOH HOH . X 10 HOH A 120 2120 2120 HOH HOH . X 10 HOH A 121 2121 2121 HOH HOH . X 10 HOH A 122 2122 2122 HOH HOH . X 10 HOH A 123 2123 2123 HOH HOH . X 10 HOH A 124 2124 2124 HOH HOH . X 10 HOH A 125 2125 2125 HOH HOH . X 10 HOH A 126 2126 2126 HOH HOH . X 10 HOH A 127 2127 2127 HOH HOH . X 10 HOH A 128 2128 2128 HOH HOH . X 10 HOH A 129 2129 2129 HOH HOH . X 10 HOH A 130 2130 2130 HOH HOH . X 10 HOH A 131 2131 2131 HOH HOH . X 10 HOH A 132 2132 2132 HOH HOH . X 10 HOH A 133 2133 2133 HOH HOH . X 10 HOH A 134 2134 2134 HOH HOH . X 10 HOH A 135 2135 2135 HOH HOH . X 10 HOH A 136 2136 2136 HOH HOH . X 10 HOH A 137 2137 2137 HOH HOH . X 10 HOH A 138 2138 2138 HOH HOH . X 10 HOH A 139 2139 2139 HOH HOH . X 10 HOH A 140 2140 2140 HOH HOH . X 10 HOH A 141 2141 2141 HOH HOH . X 10 HOH A 142 2142 2142 HOH HOH . X 10 HOH A 143 2143 2143 HOH HOH . X 10 HOH A 144 2144 2144 HOH HOH . X 10 HOH A 145 2145 2145 HOH HOH . X 10 HOH A 146 2146 2146 HOH HOH . X 10 HOH A 147 2147 2147 HOH HOH . X 10 HOH A 148 2148 2148 HOH HOH . X 10 HOH A 149 2149 2149 HOH HOH . X 10 HOH A 150 2150 2150 HOH HOH . X 10 HOH A 151 2151 2151 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N _atom_site.label_comp_id NH4 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id W _atom_site.label_entity_id 8 _atom_site.Cartn_x 37.754 _atom_site.Cartn_y -21.905 _atom_site.Cartn_z -23.358 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.21 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N _atom_site.auth_comp_id NH4 _atom_site.auth_seq_id 1556 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #