data_2XNI # _model_server_result.job_id 0CWE3-j3o0PNCpk5zOGs-Q _model_server_result.datetime_utc '2025-02-27 18:43:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1041}' # _entry.id 2XNI # _exptl.entry_id 2XNI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XNI _cell.length_a 233.289 _cell.length_b 233.289 _cell.length_c 78.067 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XNI _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 149 A SER 139 1_555 E B28 TR8 . A TR8 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? metalc ? metalc1 A O THR 14 A THR 4 1_555 I MG MG . C MG 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc2 A O ALA 15 A ALA 5 1_555 G MG MG . A MG 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 A SG CYS 107 A CYS 97 1_555 F ZN ZN . A ZN 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 A SG CYS 109 A CYS 99 1_555 F ZN ZN . A ZN 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc5 A O ALA 121 A ALA 111 1_555 G MG MG . A MG 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 A SG CYS 155 A CYS 145 1_555 F ZN ZN . A ZN 1182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc7 F ZN ZN . A ZN 1182 1_555 J O HOH . A HOH 2030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc8 J O HOH . A HOH 2003 1_555 I MG MG . C MG 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc9 B SG CYS 107 B CYS 97 1_555 H ZN ZN . B ZN 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc10 B SG CYS 109 B CYS 99 1_555 H ZN ZN . B ZN 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc11 B SG CYS 155 B CYS 145 1_555 H ZN ZN . B ZN 1181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc12 H ZN ZN . B ZN 1181 1_555 K O HOH . B HOH 2024 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc13 C O LEU 13 C LEU 31 1_555 I MG MG . C MG 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc14 C O GLY 15 C GLY 33 1_555 I MG MG . C MG 1041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2XNI _atom_sites.fract_transf_matrix[1][1] 0.004287 _atom_sites.fract_transf_matrix[1][2] 0.002475 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 TR8 A 1 1181 1181 TR8 TR8 . F 4 ZN A 1 1182 1182 ZN ZN . G 5 MG A 1 1183 1183 MG MG . H 4 ZN B 1 1181 1181 ZN ZN . I 5 MG C 1 1041 1041 MG MG . J 6 HOH A 1 2001 2001 HOH HOH . J 6 HOH A 2 2002 2002 HOH HOH . J 6 HOH A 3 2003 2003 HOH HOH . J 6 HOH A 4 2004 2004 HOH HOH . J 6 HOH A 5 2005 2005 HOH HOH . J 6 HOH A 6 2006 2006 HOH HOH . J 6 HOH A 7 2007 2007 HOH HOH . J 6 HOH A 8 2008 2008 HOH HOH . J 6 HOH A 9 2009 2009 HOH HOH . J 6 HOH A 10 2010 2010 HOH HOH . J 6 HOH A 11 2011 2011 HOH HOH . J 6 HOH A 12 2012 2012 HOH HOH . J 6 HOH A 13 2013 2013 HOH HOH . J 6 HOH A 14 2014 2014 HOH HOH . J 6 HOH A 15 2015 2015 HOH HOH . J 6 HOH A 16 2016 2016 HOH HOH . J 6 HOH A 17 2017 2017 HOH HOH . J 6 HOH A 18 2018 2018 HOH HOH . J 6 HOH A 19 2019 2019 HOH HOH . J 6 HOH A 20 2020 2020 HOH HOH . J 6 HOH A 21 2021 2021 HOH HOH . J 6 HOH A 22 2022 2022 HOH HOH . J 6 HOH A 23 2023 2023 HOH HOH . J 6 HOH A 24 2024 2024 HOH HOH . J 6 HOH A 25 2025 2025 HOH HOH . J 6 HOH A 26 2026 2026 HOH HOH . J 6 HOH A 27 2027 2027 HOH HOH . J 6 HOH A 28 2028 2028 HOH HOH . J 6 HOH A 29 2029 2029 HOH HOH . J 6 HOH A 30 2030 2030 HOH HOH . K 6 HOH B 1 2001 2001 HOH HOH . K 6 HOH B 2 2002 2002 HOH HOH . K 6 HOH B 3 2003 2003 HOH HOH . K 6 HOH B 4 2004 2004 HOH HOH . K 6 HOH B 5 2005 2005 HOH HOH . K 6 HOH B 6 2006 2006 HOH HOH . K 6 HOH B 7 2007 2007 HOH HOH . K 6 HOH B 8 2008 2008 HOH HOH . K 6 HOH B 9 2009 2009 HOH HOH . K 6 HOH B 10 2010 2010 HOH HOH . K 6 HOH B 11 2011 2011 HOH HOH . K 6 HOH B 12 2012 2012 HOH HOH . K 6 HOH B 13 2013 2013 HOH HOH . K 6 HOH B 14 2014 2014 HOH HOH . K 6 HOH B 15 2015 2015 HOH HOH . K 6 HOH B 16 2016 2016 HOH HOH . K 6 HOH B 17 2017 2017 HOH HOH . K 6 HOH B 18 2018 2018 HOH HOH . K 6 HOH B 19 2019 2019 HOH HOH . K 6 HOH B 20 2020 2020 HOH HOH . K 6 HOH B 21 2021 2021 HOH HOH . K 6 HOH B 22 2022 2022 HOH HOH . K 6 HOH B 23 2023 2023 HOH HOH . K 6 HOH B 24 2024 2024 HOH HOH . L 6 HOH C 1 2001 2001 HOH HOH . L 6 HOH C 2 2002 2002 HOH HOH . L 6 HOH C 3 2003 2003 HOH HOH . L 6 HOH C 4 2004 2004 HOH HOH . M 6 HOH D 1 2001 2001 HOH HOH . M 6 HOH D 2 2002 2002 HOH HOH . M 6 HOH D 3 2003 2003 HOH HOH . M 6 HOH D 4 2004 2004 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x 30.656 _atom_site.Cartn_y 17.122 _atom_site.Cartn_z 20.76 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.73 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1041 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #