data_2XNT
#
_model_server_result.job_id            tM1jTH4BgZuZBzswNfkoSw 
_model_server_result.datetime_utc      '2024-10-20 19:33:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xnt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":301}' 
#
_entry.id    2XNT 
#
_exptl.entry_id    2XNT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              261.747 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S)-2-[(4-CHLOROBENZYL)OXY]-2-PHENYLETHANAMINE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2XNT 
_cell.length_a            129.111 
_cell.length_b            144.867 
_cell.length_c            145.106 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XNT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
F,G,H,I,J,U,V,W,X,Y,Z,AA,BA,CA,DA 1 1 
A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Y N N 
? 2 AA N N 
? 2 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 144 A CYS 125 1_555 A SG CYS 157 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 207 A CYS 188 1_555 A SG CYS 208 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf3 B SG CYS 144 B CYS 125 1_555 B SG CYS 157 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 207 B CYS 188 1_555 B SG CYS 208 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 C SG CYS 144 C CYS 125 1_555 C SG CYS 157 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 C SG CYS 207 C CYS 188 1_555 C SG CYS 208 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf7 D SG CYS 144 D CYS 125 1_555 D SG CYS 157 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 D SG CYS 207 D CYS 188 1_555 D SG CYS 208 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf9 E SG CYS 144 E CYS 125 1_555 E SG CYS 157 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 E SG CYS 207 E CYS 188 1_555 E SG CYS 208 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf11 F SG CYS 144 F CYS 125 1_555 F SG CYS 157 F CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf12 F SG CYS 207 F CYS 188 1_555 F SG CYS 208 F CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf13 G SG CYS 144 G CYS 125 1_555 G SG CYS 157 G CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 G SG CYS 207 G CYS 188 1_555 G SG CYS 208 G CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf15 H SG CYS 144 H CYS 125 1_555 H SG CYS 157 H CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf16 H SG CYS 207 H CYS 188 1_555 H SG CYS 208 H CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf17 I SG CYS 144 I CYS 125 1_555 I SG CYS 157 I CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf18 I SG CYS 207 I CYS 188 1_555 I SG CYS 208 I CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf19 J SG CYS 144 J CYS 125 1_555 J SG CYS 157 J CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 J SG CYS 207 J CYS 188 1_555 J SG CYS 208 J CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
#
_chem_comp.formula           'C15 H16 Cl N O' 
_chem_comp.formula_weight    261.747 
_chem_comp.id                VU2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S)-2-[(4-CHLOROBENZYL)OXY]-2-PHENYLETHANAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N2 VU2 sing 374 n n 
C1 C8 VU2 sing 375 n n 
C2 C3 VU2 sing 376 n y 
C2 C7 VU2 doub 377 n y 
C3 C4 VU2 doub 378 n y 
C7 C6 VU2 sing 379 n y 
C9 C10 VU2 sing 380 n n 
C9 O1 VU2 sing 381 n n 
C10 C11 VU2 sing 382 n y 
C10 C15 VU2 doub 383 n y 
C11 C12 VU2 doub 384 n y 
C12 C13 VU2 sing 385 n y 
C13 C14 VU2 doub 386 n y 
C13 CL VU2 sing 387 n n 
C14 C15 VU2 sing 388 n y 
C4 C5 VU2 sing 389 n y 
C5 C6 VU2 doub 390 n y 
C5 C8 VU2 sing 391 n n 
O1 C8 VU2 sing 392 n n 
C1 H11C VU2 sing 393 n n 
C1 H12C VU2 sing 394 n n 
N2 H21N VU2 sing 395 n n 
N2 H22N VU2 sing 396 n n 
C8 H8 VU2 sing 397 n n 
C2 H2 VU2 sing 398 n n 
C3 H3 VU2 sing 399 n n 
C7 H7 VU2 sing 400 n n 
C4 H4 VU2 sing 401 n n 
C6 H6 VU2 sing 402 n n 
C9 H91C VU2 sing 403 n n 
C9 H92C VU2 sing 404 n n 
C11 H11 VU2 sing 405 n n 
C15 H15 VU2 sing 406 n n 
C12 H12 VU2 sing 407 n n 
C14 H14 VU2 sing 408 n n 
#
_atom_sites.entry_id                     2XNT 
_atom_sites.fract_transf_matrix[1][1]    0.007745 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006892 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 VU2 A 1 301 301 VU2 VU2 . 
L 3 BR A 1 1206 1206 BR BR . 
M 2 VU2 B 1 301 301 VU2 VU2 . 
N 3 BR B 1 1206 1206 BR BR . 
O 2 VU2 C 1 301 301 VU2 VU2 . 
P 3 BR C 1 1206 1206 BR BR . 
Q 2 VU2 D 1 301 301 VU2 VU2 . 
R 3 BR D 1 1206 1206 BR BR . 
S 2 VU2 E 1 301 301 VU2 VU2 . 
T 3 BR E 1 1206 1206 BR BR . 
U 2 VU2 F 1 301 301 VU2 VU2 . 
V 3 BR F 1 1206 1206 BR BR . 
W 2 VU2 G 1 301 301 VU2 VU2 . 
X 3 BR G 1 1206 1206 BR BR . 
Y 2 VU2 H 1 301 301 VU2 VU2 . 
Z 3 BR H 1 1206 1206 BR BR . 
AA 2 VU2 I 1 301 301 VU2 VU2 . 
BA 3 BR I 1 1206 1206 BR BR . 
CA 2 VU2 J 1 301 301 VU2 VU2 . 
DA 3 BR J 1 1206 1206 BR BR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 VU2 . . . AA 2 125.668 36.1 11.778 1 153.09 ? C1 VU2 301 I 1 
HETATM 2 C C2 VU2 . . . AA 2 123.034 35.006 15.934 1 101.5 ? C2 VU2 301 I 1 
HETATM 3 C C3 VU2 . . . AA 2 124.137 34.289 15.467 1 58.31 ? C3 VU2 301 I 1 
HETATM 4 C C7 VU2 . . . AA 2 122.345 35.866 15.077 1 62.59 ? C7 VU2 301 I 1 
HETATM 5 C C9 VU2 . . . AA 2 122.938 33.695 10.966 1 35.78 ? C9 VU2 301 I 1 
HETATM 6 C C10 VU2 . . . AA 2 122.504 32.75 12.066 1 97.48 ? C10 VU2 301 I 1 
HETATM 7 C C11 VU2 . . . AA 2 123.241 31.594 12.329 1 31.03 ? C11 VU2 301 I 1 
HETATM 8 C C12 VU2 . . . AA 2 122.848 30.736 13.357 1 93.46 ? C12 VU2 301 I 1 
HETATM 9 C C13 VU2 . . . AA 2 121.724 31.038 14.13 1 131.42 ? C13 VU2 301 I 1 
HETATM 10 C C14 VU2 . . . AA 2 120.994 32.202 13.878 1 37.84 ? C14 VU2 301 I 1 
HETATM 11 C C15 VU2 . . . AA 2 121.388 33.058 12.848 1 122.88 ? C15 VU2 301 I 1 
HETATM 12 N N2 VU2 . . . AA 2 126.779 35.111 11.882 1 18.98 ? N2 VU2 301 I 1 
HETATM 13 C C4 VU2 . . . AA 2 124.552 34.436 14.144 1 99.68 ? C4 VU2 301 I 1 
HETATM 14 C C5 VU2 . . . AA 2 123.874 35.311 13.292 1 39.87 ? C5 VU2 301 I 1 
HETATM 15 C C6 VU2 . . . AA 2 122.761 36.013 13.754 1 68.41 ? C6 VU2 301 I 1 
HETATM 16 O O1 VU2 . . . AA 2 124.262 34.167 11.225 1 64.89 ? O1 VU2 301 I 1 
HETATM 17 CL CL VU2 . . . AA 2 121.221 29.928 15.448 1 100.79 ? CL VU2 301 I 1 
HETATM 18 C C8 VU2 . . . AA 2 124.291 35.442 11.877 1 138.06 ? C8 VU2 301 I 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           18 
#