data_2XOK # _model_server_result.job_id 1KLedUlYEdj7WK-b_qXLEw _model_server_result.datetime_utc '2024-11-24 19:20:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":600}' # _entry.id 2XOK # _exptl.entry_id 2XOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.77 _cell.angle_gamma 90 _cell.entry_id 2XOK _cell.length_a 135.352 _cell.length_b 173.711 _cell.length_c 137.889 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonadecameric _pdbx_struct_assembly.oligomeric_count 19 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 T N N ? 7 V N N ? 7 X N N ? 7 Z N N ? 7 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 213 A THR 178 1_555 U MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc2 T O2G ANP . A ANP 600 1_555 U MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 T O2B ANP . A ANP 600 1_555 U MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc4 B OG1 THR 213 B THR 178 1_555 W MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc5 V O2B ANP . B ANP 600 1_555 W MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 V O2G ANP . B ANP 600 1_555 W MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc7 C OG1 THR 213 C THR 178 1_555 Y MG MG . C MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc8 X O2B ANP . C ANP 600 1_555 Y MG MG . C MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc9 X O2G ANP . C ANP 600 1_555 Y MG MG . C MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc10 D OG1 THR 197 D THR 164 1_555 AA MG MG . D MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc11 Z O2B ANP . D ANP 600 1_555 AA MG MG . D MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc12 Z O2G ANP . D ANP 600 1_555 AA MG MG . D MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc13 F OG1 THR 197 F THR 164 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? metalc ? metalc14 F OE1 GLU 222 F GLU 189 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc15 BA O2G ANP . F ANP 600 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.644 ? metalc ? metalc16 BA O2B ANP . F ANP 600 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2XOK _atom_sites.fract_transf_matrix[1][1] 0.007388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000228 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 7 ANP A 1 600 600 ANP ANP . U 8 MG A 1 700 700 MG MG . V 7 ANP B 1 600 600 ANP ANP . W 8 MG B 1 700 700 MG MG . X 7 ANP C 1 600 600 ANP ANP . Y 8 MG C 1 700 700 MG MG . Z 7 ANP D 1 600 600 ANP ANP . AA 8 MG D 1 700 700 MG MG . BA 7 ANP F 1 600 600 ANP ANP . CA 8 MG F 1 700 700 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . T 7 53.384 -23.216 -2.83 1 80.33 ? PG ANP 600 A 1 HETATM 2 O O1G ANP . . . T 7 54.701 -23.686 -2.06 1 88.77 ? O1G ANP 600 A 1 HETATM 3 O O2G ANP . . . T 7 53.203 -24.025 -4.207 1 79.7 ? O2G ANP 600 A 1 HETATM 4 O O3G ANP . . . T 7 53.395 -21.631 -3.104 1 82.65 ? O3G ANP 600 A 1 HETATM 5 P PB ANP . . . T 7 51.01 -24.726 -2.627 1 68.75 ? PB ANP 600 A 1 HETATM 6 O O1B ANP . . . T 7 50.153 -23.932 -3.686 1 65.41 ? O1B ANP 600 A 1 HETATM 7 O O2B ANP . . . T 7 51.822 -25.838 -3.419 1 60.65 ? O2B ANP 600 A 1 HETATM 8 N N3B ANP . . . T 7 52.065 -23.637 -1.813 1 70.16 ? N3B ANP 600 A 1 HETATM 9 P PA ANP . . . T 7 50.956 -26.382 -0.414 1 63.69 ? PA ANP 600 A 1 HETATM 10 O O1A ANP . . . T 7 50.835 -27.811 -1.097 1 66.58 ? O1A ANP 600 A 1 HETATM 11 O O2A ANP . . . T 7 52.452 -25.889 -0.21 1 68.33 ? O2A ANP 600 A 1 HETATM 12 O O3A ANP . . . T 7 50.189 -25.342 -1.386 1 72.55 ? O3A ANP 600 A 1 HETATM 13 O O5' ANP . . . T 7 50.172 -26.343 0.978 1 69.21 ? O5' ANP 600 A 1 HETATM 14 C C5' ANP . . . T 7 50.328 -25.166 1.772 1 71.58 ? C5' ANP 600 A 1 HETATM 15 C C4' ANP . . . T 7 50.598 -25.582 3.216 1 72.71 ? C4' ANP 600 A 1 HETATM 16 O O4' ANP . . . T 7 49.388 -26.053 3.793 1 71.17 ? O4' ANP 600 A 1 HETATM 17 C C3' ANP . . . T 7 51.602 -26.711 3.29 1 71.77 ? C3' ANP 600 A 1 HETATM 18 O O3' ANP . . . T 7 52.594 -26.237 4.186 1 73.18 ? O3' ANP 600 A 1 HETATM 19 C C2' ANP . . . T 7 50.872 -27.907 3.878 1 70.38 ? C2' ANP 600 A 1 HETATM 20 O O2' ANP . . . T 7 51.539 -28.488 4.991 1 71.03 ? O2' ANP 600 A 1 HETATM 21 C C1' ANP . . . T 7 49.486 -27.394 4.238 1 71.06 ? C1' ANP 600 A 1 HETATM 22 N N9 ANP . . . T 7 48.325 -28.12 3.693 1 71.49 ? N9 ANP 600 A 1 HETATM 23 C C8 ANP . . . T 7 47.934 -28.244 2.401 1 72.15 ? C8 ANP 600 A 1 HETATM 24 N N7 ANP . . . T 7 46.776 -28.992 2.286 1 74.14 ? N7 ANP 600 A 1 HETATM 25 C C5 ANP . . . T 7 46.409 -29.331 3.541 1 72.15 ? C5 ANP 600 A 1 HETATM 26 C C6 ANP . . . T 7 45.335 -30.075 4.251 1 74.6 ? C6 ANP 600 A 1 HETATM 27 N N6 ANP . . . T 7 44.34 -30.65 3.537 1 75.19 ? N6 ANP 600 A 1 HETATM 28 N N1 ANP . . . T 7 45.356 -30.176 5.602 1 72.44 ? N1 ANP 600 A 1 HETATM 29 C C2 ANP . . . T 7 46.329 -29.617 6.341 1 73.16 ? C2 ANP 600 A 1 HETATM 30 N N3 ANP . . . T 7 47.345 -28.917 5.822 1 67.96 ? N3 ANP 600 A 1 HETATM 31 C C4 ANP . . . T 7 47.409 -28.753 4.405 1 68.17 ? C4 ANP 600 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 503 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 31 #