data_2XOK # _model_server_result.job_id i36qmf5gy4VKXOjkCjmLiQ _model_server_result.datetime_utc '2025-02-17 22:19:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":600}' # _entry.id 2XOK # _exptl.entry_id 2XOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.77 _cell.angle_gamma 90 _cell.entry_id 2XOK _cell.length_a 135.352 _cell.length_b 173.711 _cell.length_c 137.889 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonadecameric _pdbx_struct_assembly.oligomeric_count 19 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 T N N ? 7 V N N ? 7 X N N ? 7 Z N N ? 7 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 213 A THR 178 1_555 U MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc2 T O2G ANP . A ANP 600 1_555 U MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 T O2B ANP . A ANP 600 1_555 U MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc4 B OG1 THR 213 B THR 178 1_555 W MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc5 V O2B ANP . B ANP 600 1_555 W MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 V O2G ANP . B ANP 600 1_555 W MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc7 C OG1 THR 213 C THR 178 1_555 Y MG MG . C MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc8 X O2B ANP . C ANP 600 1_555 Y MG MG . C MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc9 X O2G ANP . C ANP 600 1_555 Y MG MG . C MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc10 D OG1 THR 197 D THR 164 1_555 AA MG MG . D MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc11 Z O2B ANP . D ANP 600 1_555 AA MG MG . D MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc12 Z O2G ANP . D ANP 600 1_555 AA MG MG . D MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc13 F OG1 THR 197 F THR 164 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? metalc ? metalc14 F OE1 GLU 222 F GLU 189 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc15 BA O2G ANP . F ANP 600 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.644 ? metalc ? metalc16 BA O2B ANP . F ANP 600 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2XOK _atom_sites.fract_transf_matrix[1][1] 0.007388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000228 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 7 ANP A 1 600 600 ANP ANP . U 8 MG A 1 700 700 MG MG . V 7 ANP B 1 600 600 ANP ANP . W 8 MG B 1 700 700 MG MG . X 7 ANP C 1 600 600 ANP ANP . Y 8 MG C 1 700 700 MG MG . Z 7 ANP D 1 600 600 ANP ANP . AA 8 MG D 1 700 700 MG MG . BA 7 ANP F 1 600 600 ANP ANP . CA 8 MG F 1 700 700 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . V 7 25.42 3.109 -33.791 1 135.69 ? PG ANP 600 B 1 HETATM 2 O O1G ANP . . . V 7 25.184 1.643 -34.372 1 138.4 ? O1G ANP 600 B 1 HETATM 3 O O2G ANP . . . V 7 25.719 4.121 -34.985 1 133.16 ? O2G ANP 600 B 1 HETATM 4 O O3G ANP . . . V 7 26.612 3.111 -32.733 1 135.79 ? O3G ANP 600 B 1 HETATM 5 P PB ANP . . . V 7 23.724 5.281 -32.79 1 115.27 ? PB ANP 600 B 1 HETATM 6 O O1B ANP . . . V 7 24.297 5.822 -31.414 1 116.32 ? O1B ANP 600 B 1 HETATM 7 O O2B ANP . . . V 7 24.411 6.014 -34.016 1 114.28 ? O2B ANP 600 B 1 HETATM 8 N N3B ANP . . . V 7 23.983 3.582 -32.943 1 127.06 ? N3B ANP 600 B 1 HETATM 9 P PA ANP . . . V 7 21.471 5.046 -34.262 1 115.76 ? PA ANP 600 B 1 HETATM 10 O O1A ANP . . . V 7 21.122 6.298 -35.17 1 116.69 ? O1A ANP 600 B 1 HETATM 11 O O2A ANP . . . V 7 22.382 3.996 -35.031 1 110.21 ? O2A ANP 600 B 1 HETATM 12 O O3A ANP . . . V 7 22.154 5.496 -32.892 1 116.27 ? O3A ANP 600 B 1 HETATM 13 O O5' ANP . . . V 7 20.111 4.409 -33.741 1 117.66 ? O5' ANP 600 B 1 HETATM 14 C C5' ANP . . . V 7 20.075 3.478 -32.671 1 122.32 ? C5' ANP 600 B 1 HETATM 15 C C4' ANP . . . V 7 18.766 2.744 -32.879 1 129.54 ? C4' ANP 600 B 1 HETATM 16 O O4' ANP . . . V 7 17.729 3.303 -32.067 1 133.97 ? O4' ANP 600 B 1 HETATM 17 C C3' ANP . . . V 7 18.362 2.925 -34.33 1 132.23 ? C3' ANP 600 B 1 HETATM 18 O O3' ANP . . . V 7 18.296 1.642 -34.928 1 134.11 ? O3' ANP 600 B 1 HETATM 19 C C2' ANP . . . V 7 17.023 3.641 -34.324 1 135.59 ? C2' ANP 600 B 1 HETATM 20 O O2' ANP . . . V 7 16.033 2.889 -35.003 1 139.58 ? O2' ANP 600 B 1 HETATM 21 C C1' ANP . . . V 7 16.657 3.832 -32.856 1 137.77 ? C1' ANP 600 B 1 HETATM 22 N N9 ANP . . . V 7 16.386 5.254 -32.506 1 139.33 ? N9 ANP 600 B 1 HETATM 23 C C8 ANP . . . V 7 17.273 6.28 -32.425 1 137.75 ? C8 ANP 600 B 1 HETATM 24 N N7 ANP . . . V 7 16.686 7.473 -32.067 1 138.32 ? N7 ANP 600 B 1 HETATM 25 C C5 ANP . . . V 7 15.374 7.219 -31.904 1 141.65 ? C5 ANP 600 B 1 HETATM 26 C C6 ANP . . . V 7 14.118 7.929 -31.539 1 144.09 ? C6 ANP 600 B 1 HETATM 27 N N6 ANP . . . V 7 14.146 9.253 -31.252 1 144.84 ? N6 ANP 600 B 1 HETATM 28 N N1 ANP . . . V 7 12.945 7.241 -31.494 1 146.33 ? N1 ANP 600 B 1 HETATM 29 C C2 ANP . . . V 7 12.847 5.923 -31.769 1 146.58 ? C2 ANP 600 B 1 HETATM 30 N N3 ANP . . . V 7 13.91 5.171 -32.111 1 145.52 ? N3 ANP 600 B 1 HETATM 31 C C4 ANP . . . V 7 15.213 5.799 -32.188 1 143.03 ? C4 ANP 600 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 122 _model_server_stats.query_time_ms 463 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #