data_2XOK
#
_model_server_result.job_id            KcZThQzJPBWrSUOjC5LavA 
_model_server_result.datetime_utc      '2024-10-18 16:22:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xok 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":600}' 
#
_entry.id    2XOK 
#
_exptl.entry_id    2XOK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.77 
_cell.angle_gamma         90 
_cell.entry_id            2XOK 
_cell.length_a            135.352 
_cell.length_b            173.711 
_cell.length_c            137.889 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XOK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonadecameric 
_pdbx_struct_assembly.oligomeric_count      19 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 T N N 
? 7 V N N 
? 7 X N N 
? 7 Z N N 
? 7 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 213 A THR 178 1_555 U MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc2 T O2G ANP . A ANP 600 1_555 U MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc3 T O2B ANP . A ANP 600 1_555 U MG MG . A MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc4 B OG1 THR 213 B THR 178 1_555 W MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc5 V O2B ANP . B ANP 600 1_555 W MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc6 V O2G ANP . B ANP 600 1_555 W MG MG . B MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? 
metalc ? metalc7 C OG1 THR 213 C THR 178 1_555 Y MG MG . C MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc8 X O2B ANP . C ANP 600 1_555 Y MG MG . C MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc9 X O2G ANP . C ANP 600 1_555 Y MG MG . C MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
metalc ? metalc10 D OG1 THR 197 D THR 164 1_555 AA MG MG . D MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc11 Z O2B ANP . D ANP 600 1_555 AA MG MG . D MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc12 Z O2G ANP . D ANP 600 1_555 AA MG MG . D MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? 
metalc ? metalc13 F OG1 THR 197 F THR 164 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? 
metalc ? metalc14 F OE1 GLU 222 F GLU 189 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? 
metalc ? metalc15 BA O2G ANP . F ANP 600 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.644 ? 
metalc ? metalc16 BA O2B ANP . F ANP 600 1_555 CA MG MG . F MG 700 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     2XOK 
_atom_sites.fract_transf_matrix[1][1]    0.007388 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000228 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007256 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
T 7 ANP A 1 600 600 ANP ANP . 
U 8 MG A 1 700 700 MG MG . 
V 7 ANP B 1 600 600 ANP ANP . 
W 8 MG B 1 700 700 MG MG . 
X 7 ANP C 1 600 600 ANP ANP . 
Y 8 MG C 1 700 700 MG MG . 
Z 7 ANP D 1 600 600 ANP ANP . 
AA 8 MG D 1 700 700 MG MG . 
BA 7 ANP F 1 600 600 ANP ANP . 
CA 8 MG F 1 700 700 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . X 7 54.515 23.473 -3.725 1 74.39 ? PG ANP 600 C 1 
HETATM 2 O O1G ANP . . . X 7 54.59 24.911 -4.388 1 80.91 ? O1G ANP 600 C 1 
HETATM 3 O O2G ANP . . . X 7 55.989 22.994 -3.35 1 77.42 ? O2G ANP 600 C 1 
HETATM 4 O O3G ANP . . . X 7 53.735 22.44 -4.658 1 83 ? O3G ANP 600 C 1 
HETATM 5 P PB ANP . . . X 7 54.278 22.9 -0.873 1 59.44 ? PB ANP 600 C 1 
HETATM 6 O O1B ANP . . . X 7 54.041 21.345 -0.857 1 51.56 ? O1B ANP 600 C 1 
HETATM 7 O O2B ANP . . . X 7 55.819 23.309 -0.849 1 63.05 ? O2B ANP 600 C 1 
HETATM 8 N N3B ANP . . . X 7 53.56 23.554 -2.292 1 70.22 ? N3B ANP 600 C 1 
HETATM 9 P PA ANP . . . X 7 53.757 25.185 0.618 1 69.92 ? PA ANP 600 C 1 
HETATM 10 O O1A ANP . . . X 7 54.651 25.414 1.911 1 75.58 ? O1A ANP 600 C 1 
HETATM 11 O O2A ANP . . . X 7 54.356 25.857 -0.695 1 72.34 ? O2A ANP 600 C 1 
HETATM 12 O O3A ANP . . . X 7 53.506 23.616 0.351 1 64.62 ? O3A ANP 600 C 1 
HETATM 13 O O5' ANP . . . X 7 52.331 25.767 0.965 1 69.04 ? O5' ANP 600 C 1 
HETATM 14 C C5' ANP . . . X 7 51.403 26.228 0.011 1 65.37 ? C5' ANP 600 C 1 
HETATM 15 C C4' ANP . . . X 7 50.537 27.238 0.766 1 69.34 ? C4' ANP 600 C 1 
HETATM 16 O O4' ANP . . . X 7 49.97 26.712 1.979 1 62.92 ? O4' ANP 600 C 1 
HETATM 17 C C3' ANP . . . X 7 51.391 28.437 1.126 1 69.22 ? C3' ANP 600 C 1 
HETATM 18 O O3' ANP . . . X 7 50.704 29.579 0.626 1 74.27 ? O3' ANP 600 C 1 
HETATM 19 C C2' ANP . . . X 7 51.367 28.554 2.618 1 62.14 ? C2' ANP 600 C 1 
HETATM 20 O O2' ANP . . . X 7 51.043 29.843 3.057 1 74.91 ? O2' ANP 600 C 1 
HETATM 21 C C1' ANP . . . X 7 50.357 27.536 3.07 1 66.81 ? C1' ANP 600 C 1 
HETATM 22 N N9 ANP . . . X 7 50.816 26.951 4.324 1 67.27 ? N9 ANP 600 C 1 
HETATM 23 C C8 ANP . . . X 7 51.843 26.125 4.616 1 68.23 ? C8 ANP 600 C 1 
HETATM 24 N N7 ANP . . . X 7 51.925 25.871 5.972 1 69.96 ? N7 ANP 600 C 1 
HETATM 25 C C5 ANP . . . X 7 50.93 26.567 6.542 1 68.42 ? C5 ANP 600 C 1 
HETATM 26 C C6 ANP . . . X 7 50.362 26.84 7.865 1 68.77 ? C6 ANP 600 C 1 
HETATM 27 N N6 ANP . . . X 7 50.912 26.269 8.945 1 70.9 ? N6 ANP 600 C 1 
HETATM 28 N N1 ANP . . . X 7 49.295 27.654 7.978 1 73.09 ? N1 ANP 600 C 1 
HETATM 29 C C2 ANP . . . X 7 48.711 28.262 6.929 1 75.3 ? C2 ANP 600 C 1 
HETATM 30 N N3 ANP . . . X 7 49.132 28.105 5.672 1 71 ? N3 ANP 600 C 1 
HETATM 31 C C4 ANP . . . X 7 50.261 27.252 5.467 1 68.35 ? C4 ANP 600 C 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#