data_2XOV # _model_server_result.job_id lyM3XBl03GDPD3rOL4ebOA _model_server_result.datetime_utc '2024-10-15 11:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":518}' # _entry.id 2XOV # _exptl.entry_id 2XOV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.395 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'nonyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 19 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XOV _cell.length_a 110.4 _cell.length_b 110.4 _cell.length_c 127.86 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C15 H30 O6' _chem_comp.formula_weight 306.395 _chem_comp.id BNG _chem_comp.mon_nstd_flag n _chem_comp.name 'nonyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-NONYLGLUCOSIDE;nonyl beta-D-glucoside;nonyl D-glucoside;nonyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BNG sing 70 n n C1 O1 BNG sing 71 n n C1 O5 BNG sing 72 n n C1 H1 BNG sing 73 n n C2 C3 BNG sing 74 n n C2 O2 BNG sing 75 n n C2 H2 BNG sing 76 n n C3 C4 BNG sing 77 n n C3 O3 BNG sing 78 n n C3 H3 BNG sing 79 n n C4 C5 BNG sing 80 n n C4 O4 BNG sing 81 n n C4 H4 BNG sing 82 n n C5 C6 BNG sing 83 n n C5 O5 BNG sing 84 n n C5 H5 BNG sing 85 n n C6 O6 BNG sing 86 n n C6 H61 BNG sing 87 n n C6 H62 BNG sing 88 n n C1' C2' BNG sing 89 n n C1' O1 BNG sing 90 n n C1' "H1'1" BNG sing 91 n n C1' "H1'2" BNG sing 92 n n C2' C3' BNG sing 93 n n C2' "H2'1" BNG sing 94 n n C2' "H2'2" BNG sing 95 n n C3' C4' BNG sing 96 n n C3' "H3'1" BNG sing 97 n n C3' "H3'2" BNG sing 98 n n C4' C5' BNG sing 99 n n C4' "H4'1" BNG sing 100 n n C4' "H4'2" BNG sing 101 n n C5' C6' BNG sing 102 n n C5' "H5'1" BNG sing 103 n n C5' "H5'2" BNG sing 104 n n C6' C7' BNG sing 105 n n C6' "H6'1" BNG sing 106 n n C6' "H6'2" BNG sing 107 n n C7' C8' BNG sing 108 n n C7' "H7'1" BNG sing 109 n n C7' "H7'2" BNG sing 110 n n C8' C9' BNG sing 111 n n C8' "H8'1" BNG sing 112 n n C8' "H8'2" BNG sing 113 n n C9' "H9'1" BNG sing 114 n n C9' "H9'2" BNG sing 115 n n C9' "H9'3" BNG sing 116 n n O2 HO2 BNG sing 117 n n O3 HO3 BNG sing 118 n n O4 HO4 BNG sing 119 n n O6 HO6 BNG sing 120 n n # _pdbx_chem_comp_identifier.comp_id BNG _pdbx_chem_comp_identifier.identifier b-nonylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2XOV _atom_sites.fract_transf_matrix[1][1] 0.009058 _atom_sites.fract_transf_matrix[1][2] 0.00523 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BNG A 1 519 519 BNG BNG . C 2 BNG A 1 501 501 BNG BNG . D 2 BNG A 1 502 502 BNG BNG . E 2 BNG A 1 503 503 BNG BNG . F 2 BNG A 1 504 504 BNG BNG . G 2 BNG A 1 505 505 BNG BNG . H 2 BNG A 1 506 506 BNG BNG . I 2 BNG A 1 507 507 BNG BNG . J 2 BNG A 1 508 508 BNG BNG . K 2 BNG A 1 509 509 BNG BNG . L 2 BNG A 1 510 510 BNG BNG . M 2 BNG A 1 511 511 BNG BNG . N 2 BNG A 1 512 512 BNG BNG . O 2 BNG A 1 513 513 BNG BNG . P 2 BNG A 1 514 514 BNG BNG . Q 2 BNG A 1 515 515 BNG BNG . R 2 BNG A 1 516 516 BNG BNG . S 2 BNG A 1 517 517 BNG BNG . T 2 BNG A 1 518 518 BNG BNG . U 3 GOL A 1 520 520 GOL GOL . V 4 HOH A 1 2001 2001 HOH HOH . V 4 HOH A 2 2002 2002 HOH HOH . V 4 HOH A 3 2003 2003 HOH HOH . V 4 HOH A 4 2004 2004 HOH HOH . V 4 HOH A 5 2005 2005 HOH HOH . V 4 HOH A 6 2006 2006 HOH HOH . V 4 HOH A 7 2007 2007 HOH HOH . V 4 HOH A 8 2008 2008 HOH HOH . V 4 HOH A 9 2009 2009 HOH HOH . V 4 HOH A 10 2010 2010 HOH HOH . V 4 HOH A 11 2011 2011 HOH HOH . V 4 HOH A 12 2012 2012 HOH HOH . V 4 HOH A 13 2013 2013 HOH HOH . V 4 HOH A 14 2014 2014 HOH HOH . V 4 HOH A 15 2015 2015 HOH HOH . V 4 HOH A 16 2016 2016 HOH HOH . V 4 HOH A 17 2017 2017 HOH HOH . V 4 HOH A 18 2018 2018 HOH HOH . V 4 HOH A 19 2019 2019 HOH HOH . V 4 HOH A 20 2020 2020 HOH HOH . V 4 HOH A 21 2021 2021 HOH HOH . V 4 HOH A 22 2022 2022 HOH HOH . V 4 HOH A 23 2023 2023 HOH HOH . V 4 HOH A 24 2024 2024 HOH HOH . V 4 HOH A 25 2025 2025 HOH HOH . V 4 HOH A 26 2026 2026 HOH HOH . V 4 HOH A 27 2027 2027 HOH HOH . V 4 HOH A 28 2028 2028 HOH HOH . V 4 HOH A 29 2029 2029 HOH HOH . V 4 HOH A 30 2030 2030 HOH HOH . V 4 HOH A 31 2031 2031 HOH HOH . V 4 HOH A 32 2032 2032 HOH HOH . V 4 HOH A 33 2033 2033 HOH HOH . V 4 HOH A 34 2034 2034 HOH HOH . V 4 HOH A 35 2035 2035 HOH HOH . V 4 HOH A 36 2036 2036 HOH HOH . V 4 HOH A 37 2037 2037 HOH HOH . V 4 HOH A 38 2038 2038 HOH HOH . V 4 HOH A 39 2039 2039 HOH HOH . V 4 HOH A 40 2040 2040 HOH HOH . V 4 HOH A 41 2041 2041 HOH HOH . V 4 HOH A 42 2042 2042 HOH HOH . V 4 HOH A 43 2043 2043 HOH HOH . V 4 HOH A 44 2044 2044 HOH HOH . V 4 HOH A 45 2045 2045 HOH HOH . V 4 HOH A 46 2046 2046 HOH HOH . V 4 HOH A 47 2047 2047 HOH HOH . V 4 HOH A 48 2048 2048 HOH HOH . V 4 HOH A 49 2049 2049 HOH HOH . V 4 HOH A 50 2050 2050 HOH HOH . V 4 HOH A 51 2051 2051 HOH HOH . V 4 HOH A 52 2052 2052 HOH HOH . V 4 HOH A 53 2053 2053 HOH HOH . V 4 HOH A 54 2054 2054 HOH HOH . V 4 HOH A 55 2055 2055 HOH HOH . V 4 HOH A 56 2056 2056 HOH HOH . V 4 HOH A 57 2057 2057 HOH HOH . V 4 HOH A 58 2058 2058 HOH HOH . V 4 HOH A 59 2059 2059 HOH HOH . V 4 HOH A 60 2060 2060 HOH HOH . V 4 HOH A 61 2061 2061 HOH HOH . V 4 HOH A 62 2062 2062 HOH HOH . V 4 HOH A 63 2063 2063 HOH HOH . V 4 HOH A 64 2064 2064 HOH HOH . V 4 HOH A 65 2065 2065 HOH HOH . V 4 HOH A 66 2066 2066 HOH HOH . V 4 HOH A 67 2067 2067 HOH HOH . V 4 HOH A 68 2068 2068 HOH HOH . V 4 HOH A 69 2069 2069 HOH HOH . V 4 HOH A 70 2070 2070 HOH HOH . V 4 HOH A 71 2071 2071 HOH HOH . V 4 HOH A 72 2072 2072 HOH HOH . V 4 HOH A 73 2073 2073 HOH HOH . V 4 HOH A 74 2074 2074 HOH HOH . V 4 HOH A 75 2075 2075 HOH HOH . V 4 HOH A 76 2076 2076 HOH HOH . V 4 HOH A 77 2077 2077 HOH HOH . V 4 HOH A 78 2078 2078 HOH HOH . V 4 HOH A 79 2079 2079 HOH HOH . V 4 HOH A 80 2080 2080 HOH HOH . V 4 HOH A 81 2081 2081 HOH HOH . V 4 HOH A 82 2082 2082 HOH HOH . V 4 HOH A 83 2083 2083 HOH HOH . V 4 HOH A 84 2084 2084 HOH HOH . V 4 HOH A 85 2085 2085 HOH HOH . V 4 HOH A 86 2086 2086 HOH HOH . V 4 HOH A 87 2087 2087 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNG . . . T 2 13.022 -40.567 1.74 1 50.2 ? C1 BNG 518 A 1 HETATM 2 C C1' BNG . . . T 2 15.099 -39.455 1.723 1 45.29 ? C1' BNG 518 A 1 HETATM 3 C C2' BNG . . . T 2 16.526 -39.769 2.161 1 45.35 ? C2' BNG 518 A 1 HETATM 4 C C3' BNG . . . T 2 16.773 -39.364 3.607 1 42.55 ? C3' BNG 518 A 1 HETATM 5 C C4' BNG . . . T 2 18.239 -39.002 3.817 1 44.75 ? C4' BNG 518 A 1 HETATM 6 O O1 BNG . . . T 2 14.175 -40.21 2.5 1 50.92 ? O1 BNG 518 A 1 HETATM 7 O O5 BNG . . . T 2 12.018 -41.083 2.615 1 53.46 ? O5 BNG 518 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #