data_2XP9 # _model_server_result.job_id OFfyYrpWp-GD8an0IBsETA _model_server_result.datetime_utc '2024-10-10 01:25:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1165}' # _entry.id 2XP9 # _exptl.entry_id 2XP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.366 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[BENZYL(CARBOXYMETHYL)CARBAMOYL]-2-PHENYL-1H-IMIDAZOLE-5-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XP9 _cell.length_a 68.28 _cell.length_b 68.28 _cell.length_c 79.538 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H17 N3 O5' _chem_comp.formula_weight 379.366 _chem_comp.id 4G8 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[BENZYL(CARBOXYMETHYL)CARBAMOYL]-2-PHENYL-1H-IMIDAZOLE-5-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 4G8 sing 87 n y C20 C19 4G8 doub 88 n y C21 C22 4G8 doub 89 n y C22 C23 4G8 sing 90 n y C23 C24 4G8 doub 91 n y C24 C19 4G8 sing 92 n y C19 C18 4G8 sing 93 n n C18 N17 4G8 sing 94 n n N17 C25 4G8 sing 95 n n N17 C15 4G8 sing 96 n n C25 C26 4G8 sing 97 n n C26 O27 4G8 doub 98 n n C26 O28 4G8 sing 99 n n C15 O16 4G8 doub 100 n n C15 C9 4G8 sing 101 n n C9 N8 4G8 sing 102 n y C9 C10 4G8 doub 103 n y N8 C1 4G8 doub 104 n y C10 C12 4G8 sing 105 n n C10 N11 4G8 sing 106 n y C12 O14 4G8 doub 107 n n C12 O13 4G8 sing 108 n n N11 C1 4G8 sing 109 n y C1 C2 4G8 sing 110 n y C2 C3 4G8 sing 111 n y C2 C7 4G8 doub 112 n y C3 C4 4G8 doub 113 n y C4 C5 4G8 sing 114 n y C5 C6 4G8 doub 115 n y C6 C7 4G8 sing 116 n y C20 H20 4G8 sing 117 n n C21 H21 4G8 sing 118 n n C22 H22 4G8 sing 119 n n C23 H23 4G8 sing 120 n n C24 H24 4G8 sing 121 n n C18 H181 4G8 sing 122 n n C18 H182 4G8 sing 123 n n C25 H251 4G8 sing 124 n n C25 H252 4G8 sing 125 n n O28 H28 4G8 sing 126 n n N11 H11 4G8 sing 127 n n O13 H13 4G8 sing 128 n n C3 H3 4G8 sing 129 n n C7 H7 4G8 sing 130 n n C4 H4 4G8 sing 131 n n C5 H5 4G8 sing 132 n n C6 H6 4G8 sing 133 n n # _atom_sites.entry_id 2XP9 _atom_sites.fract_transf_matrix[1][1] 0.014646 _atom_sites.fract_transf_matrix[1][2] 0.008456 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 12P A 1 1164 1164 12P 12P . C 3 4G8 A 1 1165 1165 4G8 4G8 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . D 4 HOH A 139 2139 2139 HOH HOH . D 4 HOH A 140 2140 2140 HOH HOH . D 4 HOH A 141 2141 2141 HOH HOH . D 4 HOH A 142 2142 2142 HOH HOH . D 4 HOH A 143 2143 2143 HOH HOH . D 4 HOH A 144 2144 2144 HOH HOH . D 4 HOH A 145 2145 2145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 4G8 . . . C 3 44.196 -12.488 15.223 1 51.37 ? C20 4G8 1165 A 1 HETATM 2 C C21 4G8 . . . C 3 44.932 -13.377 16.027 1 52.67 ? C21 4G8 1165 A 1 HETATM 3 C C22 4G8 . . . C 3 44.238 -14.388 16.728 1 53.46 ? C22 4G8 1165 A 1 HETATM 4 C C23 4G8 . . . C 3 42.835 -14.494 16.633 1 52.24 ? C23 4G8 1165 A 1 HETATM 5 C C24 4G8 . . . C 3 42.104 -13.608 15.831 1 47.33 ? C24 4G8 1165 A 1 HETATM 6 C C19 4G8 . . . C 3 42.783 -12.604 15.119 1 48.48 ? C19 4G8 1165 A 1 HETATM 7 C C18 4G8 . . . C 3 41.977 -11.619 14.224 1 42.01 ? C18 4G8 1165 A 1 HETATM 8 N N17 4G8 . . . C 3 41.291 -12.478 13.223 1 38.6 ? N17 4G8 1165 A 1 HETATM 9 C C25 4G8 . . . C 3 42.207 -13.301 12.367 1 38.47 ? C25 4G8 1165 A 1 HETATM 10 C C26 4G8 . . . C 3 42.527 -12.461 11.105 1 42.65 ? C26 4G8 1165 A 1 HETATM 11 O O27 4G8 . . . C 3 42.457 -11.225 11.096 1 44.98 ? O27 4G8 1165 A 1 HETATM 12 O O28 4G8 . . . C 3 42.801 -13.113 9.947 1 47.24 ? O28 4G8 1165 A 1 HETATM 13 C C15 4G8 . . . C 3 39.966 -12.562 13.159 1 32.17 ? C15 4G8 1165 A 1 HETATM 14 O O16 4G8 . . . C 3 39.229 -11.926 13.896 1 33.31 ? O16 4G8 1165 A 1 HETATM 15 C C9 4G8 . . . C 3 39.413 -13.692 12.18 1 28.3 ? C9 4G8 1165 A 1 HETATM 16 N N8 4G8 . . . C 3 39.46 -15.005 12.507 1 25.34 ? N8 4G8 1165 A 1 HETATM 17 C C10 4G8 . . . C 3 38.894 -13.589 10.904 1 26.63 ? C10 4G8 1165 A 1 HETATM 18 C C12 4G8 . . . C 3 38.688 -12.316 10.066 1 31.6 ? C12 4G8 1165 A 1 HETATM 19 O O14 4G8 . . . C 3 38.826 -11.191 10.586 1 28.48 ? O14 4G8 1165 A 1 HETATM 20 O O13 4G8 . . . C 3 38.387 -12.45 8.863 1 25.54 ? O13 4G8 1165 A 1 HETATM 21 N N11 4G8 . . . C 3 38.594 -14.802 10.466 1 26.72 ? N11 4G8 1165 A 1 HETATM 22 C C1 4G8 . . . C 3 38.935 -15.692 11.454 1 25.46 ? C1 4G8 1165 A 1 HETATM 23 C C2 4G8 . . . C 3 38.837 -17.088 11.419 1 27.12 ? C2 4G8 1165 A 1 HETATM 24 C C3 4G8 . . . C 3 38.939 -17.75 10.186 1 23.61 ? C3 4G8 1165 A 1 HETATM 25 C C4 4G8 . . . C 3 38.881 -19.136 10.136 1 24.87 ? C4 4G8 1165 A 1 HETATM 26 C C5 4G8 . . . C 3 38.74 -19.92 11.3 1 22.89 ? C5 4G8 1165 A 1 HETATM 27 C C6 4G8 . . . C 3 38.663 -19.232 12.538 1 22.77 ? C6 4G8 1165 A 1 HETATM 28 C C7 4G8 . . . C 3 38.72 -17.851 12.611 1 23.3 ? C7 4G8 1165 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #