data_2XPU # _model_server_result.job_id bxVjBKdA5w66JQAfW2puLQ _model_server_result.datetime_utc '2024-11-24 08:26:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xpu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1209}' # _entry.id 2XPU # _exptl.entry_id 2XPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.419 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5A,6-ANHYDROTETRACYCLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XPU _cell.length_a 66.233 _cell.length_b 66.233 _cell.length_c 179.872 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 66.233 66.233 0 3 'crystal symmetry operation' 6_555 x,-y+1/2,-z+1/4 1 0 0 0 -1 0 0 0 -1 0 33.1165 44.968 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H22 N2 O7' _chem_comp.formula_weight 426.419 _chem_comp.id TDC _chem_comp.mon_nstd_flag . _chem_comp.name 5A,6-ANHYDROTETRACYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O12 C12 TDC doub 281 n n C12 C1B TDC sing 282 n n C12 C1C TDC sing 283 n n C1B C11 TDC sing 284 n y C1B C51 TDC doub 285 n y C11 O11 TDC sing 286 n n C11 C1A TDC doub 287 n y C1A C10 TDC sing 288 n y C1A C61 TDC sing 289 n y C10 O10 TDC sing 290 n n C10 C9 TDC doub 291 n y C9 C8 TDC sing 292 n y C8 C7 TDC doub 293 n y C7 C61 TDC sing 294 n y C61 C6 TDC doub 295 n y C6 C62 TDC sing 296 n n C6 C51 TDC sing 297 n y C51 C5 TDC sing 298 n n C5 C41 TDC sing 299 n n C1C C1 TDC sing 300 n n C1C O1C TDC sing 301 n n C1C C41 TDC sing 302 n n C1 O1 TDC doub 303 n n C1 C2 TDC sing 304 n n C41 C4 TDC sing 305 n n C4 N4 TDC sing 306 n n C4 C3 TDC sing 307 n n N4 C43 TDC sing 308 n n N4 C42 TDC sing 309 n n C3 O3 TDC sing 310 n n C3 C2 TDC doub 311 n n C2 C21 TDC sing 312 n n C21 O21 TDC doub 313 n n C21 N21 TDC sing 314 n n O11 H11 TDC sing 315 n n O10 H10 TDC sing 316 n n C9 H9 TDC sing 317 n n C8 H8 TDC sing 318 n n C7 H7 TDC sing 319 n n C62 H621 TDC sing 320 n n C62 H622 TDC sing 321 n n C62 H623 TDC sing 322 n n C5 H5C1 TDC sing 323 n n C5 H5C2 TDC sing 324 n n C41 H41 TDC sing 325 n n O1C H1C TDC sing 326 n n C4 H4 TDC sing 327 n n C43 H431 TDC sing 328 n n C43 H432 TDC sing 329 n n C43 H433 TDC sing 330 n n C42 H421 TDC sing 331 n n C42 H422 TDC sing 332 n n C42 H423 TDC sing 333 n n O3 H3 TDC sing 334 n n N21 H211 TDC sing 335 n n N21 H212 TDC sing 336 n n # _atom_sites.entry_id 2XPU _atom_sites.fract_transf_matrix[1][1] 0.015098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00556 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TDC A 1 1209 1209 TDC TDC . C 3 CL A 1 1210 1210 CL CL . D 3 CL A 1 1211 1211 CL CL . E 4 SO4 A 1 1212 1212 SO4 SO4 . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . F 5 HOH A 77 2077 2077 HOH HOH . F 5 HOH A 78 2078 2078 HOH HOH . F 5 HOH A 79 2079 2079 HOH HOH . F 5 HOH A 80 2080 2080 HOH HOH . F 5 HOH A 81 2081 2081 HOH HOH . F 5 HOH A 82 2082 2082 HOH HOH . F 5 HOH A 83 2083 2083 HOH HOH . F 5 HOH A 84 2084 2084 HOH HOH . F 5 HOH A 85 2085 2085 HOH HOH . F 5 HOH A 86 2086 2086 HOH HOH . F 5 HOH A 87 2087 2087 HOH HOH . F 5 HOH A 88 2088 2088 HOH HOH . F 5 HOH A 89 2089 2089 HOH HOH . F 5 HOH A 90 2090 2090 HOH HOH . F 5 HOH A 91 2091 2091 HOH HOH . F 5 HOH A 92 2092 2092 HOH HOH . F 5 HOH A 93 2093 2093 HOH HOH . F 5 HOH A 94 2094 2094 HOH HOH . F 5 HOH A 95 2095 2095 HOH HOH . F 5 HOH A 96 2096 2096 HOH HOH . F 5 HOH A 97 2097 2097 HOH HOH . F 5 HOH A 98 2098 2098 HOH HOH . F 5 HOH A 99 2099 2099 HOH HOH . F 5 HOH A 100 2100 2100 HOH HOH . F 5 HOH A 101 2101 2101 HOH HOH . F 5 HOH A 102 2102 2102 HOH HOH . F 5 HOH A 103 2103 2103 HOH HOH . F 5 HOH A 104 2104 2104 HOH HOH . F 5 HOH A 105 2105 2105 HOH HOH . F 5 HOH A 106 2106 2106 HOH HOH . F 5 HOH A 107 2107 2107 HOH HOH . F 5 HOH A 108 2108 2108 HOH HOH . F 5 HOH A 109 2109 2109 HOH HOH . F 5 HOH A 110 2110 2110 HOH HOH . F 5 HOH A 111 2111 2111 HOH HOH . F 5 HOH A 112 2112 2112 HOH HOH . F 5 HOH A 113 2113 2113 HOH HOH . F 5 HOH A 114 2114 2114 HOH HOH . F 5 HOH A 115 2115 2115 HOH HOH . F 5 HOH A 116 2116 2116 HOH HOH . F 5 HOH A 117 2117 2117 HOH HOH . F 5 HOH A 118 2118 2118 HOH HOH . F 5 HOH A 119 2119 2119 HOH HOH . F 5 HOH A 120 2120 2120 HOH HOH . F 5 HOH A 121 2121 2121 HOH HOH . F 5 HOH A 122 2122 2122 HOH HOH . F 5 HOH A 123 2123 2123 HOH HOH . F 5 HOH A 124 2124 2124 HOH HOH . F 5 HOH A 125 2125 2125 HOH HOH . F 5 HOH A 126 2126 2126 HOH HOH . F 5 HOH A 127 2127 2127 HOH HOH . F 5 HOH A 128 2128 2128 HOH HOH . F 5 HOH A 129 2129 2129 HOH HOH . F 5 HOH A 130 2130 2130 HOH HOH . F 5 HOH A 131 2131 2131 HOH HOH . F 5 HOH A 132 2132 2132 HOH HOH . F 5 HOH A 133 2133 2133 HOH HOH . F 5 HOH A 134 2134 2134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 TDC . . . B 2 21.21 34.311 32.249 1 29.7 ? O12 TDC 1209 A 1 HETATM 2 C C12 TDC . . . B 2 20.605 34.43 33.349 1 24.58 ? C12 TDC 1209 A 1 HETATM 3 C C1B TDC . . . B 2 20.199 35.724 33.961 1 22.75 ? C1B TDC 1209 A 1 HETATM 4 C C11 TDC . . . B 2 20.454 36.895 33.282 1 30.02 ? C11 TDC 1209 A 1 HETATM 5 O O11 TDC . . . B 2 21.066 36.879 32.025 1 29.4 ? O11 TDC 1209 A 1 HETATM 6 C C1A TDC . . . B 2 20.077 38.117 33.844 1 26.29 ? C1A TDC 1209 A 1 HETATM 7 C C10 TDC . . . B 2 20.35 39.275 33.121 1 30.09 ? C10 TDC 1209 A 1 HETATM 8 O O10 TDC . . . B 2 20.991 39.247 31.878 1 29 ? O10 TDC 1209 A 1 HETATM 9 C C9 TDC . . . B 2 19.923 40.553 33.727 1 28.24 ? C9 TDC 1209 A 1 HETATM 10 C C8 TDC . . . B 2 19.333 40.556 34.985 1 28.6 ? C8 TDC 1209 A 1 HETATM 11 C C7 TDC . . . B 2 19.059 39.401 35.679 1 27.49 ? C7 TDC 1209 A 1 HETATM 12 C C61 TDC . . . B 2 19.445 38.168 35.127 1 25.7 ? C61 TDC 1209 A 1 HETATM 13 C C6 TDC . . . B 2 19.2 36.972 35.816 1 20.09 ? C6 TDC 1209 A 1 HETATM 14 C C62 TDC . . . B 2 18.541 36.962 37.185 1 23.48 ? C62 TDC 1209 A 1 HETATM 15 C C51 TDC . . . B 2 19.578 35.767 35.229 1 22.34 ? C51 TDC 1209 A 1 HETATM 16 C C5 TDC . . . B 2 19.352 34.482 35.989 1 18.62 ? C5 TDC 1209 A 1 HETATM 17 C C1C TDC . . . B 2 20.141 33.174 34.01 1 20.82 ? C1C TDC 1209 A 1 HETATM 18 C C1 TDC . . . B 2 18.689 32.791 33.712 1 22.63 ? C1 TDC 1209 A 1 HETATM 19 O O1 TDC . . . B 2 18.082 33.345 32.789 1 25.68 ? O1 TDC 1209 A 1 HETATM 20 O O1C TDC . . . B 2 21.066 32.111 33.632 1 23.99 ? O1C TDC 1209 A 1 HETATM 21 C C41 TDC . . . B 2 20.282 33.352 35.512 1 20.61 ? C41 TDC 1209 A 1 HETATM 22 C C4 TDC . . . B 2 19.971 32.051 36.297 1 21.07 ? C4 TDC 1209 A 1 HETATM 23 N N4 TDC . . . B 2 21.069 31.255 36.932 1 23.19 ? N4 TDC 1209 A 1 HETATM 24 C C43 TDC . . . B 2 21.761 32.044 38.003 1 24.77 ? C43 TDC 1209 A 1 HETATM 25 C C42 TDC . . . B 2 22.046 30.714 35.955 1 25.32 ? C42 TDC 1209 A 1 HETATM 26 C C3 TDC . . . B 2 19.001 31.134 35.537 1 20.02 ? C3 TDC 1209 A 1 HETATM 27 O O3 TDC . . . B 2 18.762 30.098 36.1 1 22.5 ? O3 TDC 1209 A 1 HETATM 28 C C2 TDC . . . B 2 18.281 31.572 34.385 1 24.51 ? C2 TDC 1209 A 1 HETATM 29 C C21 TDC . . . B 2 17.154 30.785 33.907 1 27.34 ? C21 TDC 1209 A 1 HETATM 30 O O21 TDC . . . B 2 16.609 29.876 34.591 1 27.56 ? O21 TDC 1209 A 1 HETATM 31 N N21 TDC . . . B 2 16.433 31.275 32.892 1 29.07 ? N21 TDC 1209 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #