data_2XQT # _model_server_result.job_id WTetR9nctXs1MNlWgKg8Dg _model_server_result.datetime_utc '2024-11-05 16:36:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1062}' # _entry.id 2XQT # _exptl.entry_id 2XQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DICYCLOHEXYLUREA _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XQT _cell.length_a 91.47 _cell.length_b 91.47 _cell.length_c 258.12 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 45.735 -79.215344 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 91.47 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 R N N ? 2 Z N N ? 2 NA N N ? 2 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A CD GLU 62 A GLU 62 1_555 F N1 DCW . A DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 B C FME 1 B FME 1 1_555 B N GLU 2 B GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 B CD GLU 62 B GLU 62 1_555 R N1 DCW . B DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 C C FME 1 C FME 1 1_555 C N GLU 2 C GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 C CD GLU 62 C GLU 62 1_555 Z N1 DCW . C DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale7 D C FME 1 D FME 1 1_555 D N GLU 2 D GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 D CD GLU 62 D GLU 62 1_555 NA N1 DCW . D DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale9 E C FME 1 E FME 1 1_555 E N GLU 2 E GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale10 E CD GLU 62 E GLU 62 1_555 SA N1 DCW . E DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C13 H24 N2 O' _chem_comp.formula_weight 224.342 _chem_comp.id DCW _chem_comp.mon_nstd_flag . _chem_comp.name DICYCLOHEXYLUREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 DCW sing 130 n n N1 C2 DCW sing 131 n n O1 C1 DCW doub 132 n n C1 N2 DCW sing 133 n n C2 C3 DCW sing 134 n n C2 C7 DCW sing 135 n n N2 C8 DCW sing 136 n n C3 C4 DCW sing 137 n n C7 C6 DCW sing 138 n n C4 C5 DCW sing 139 n n C5 C6 DCW sing 140 n n C8 C9 DCW sing 141 n n C8 C13 DCW sing 142 n n C9 C10 DCW sing 143 n n C13 C12 DCW sing 144 n n C10 C11 DCW sing 145 n n C11 C12 DCW sing 146 n n N1 H1 DCW sing 147 n n C2 H2 DCW sing 148 n n N2 HA DCW sing 149 n n C3 H31C DCW sing 150 n n C3 H32C DCW sing 151 n n C7 H71C DCW sing 152 n n C7 H72C DCW sing 153 n n C8 H8 DCW sing 154 n n C4 H41C DCW sing 155 n n C4 H42C DCW sing 156 n n C6 H61C DCW sing 157 n n C6 H62C DCW sing 158 n n C5 H51C DCW sing 159 n n C5 H52C DCW sing 160 n n C9 H91C DCW sing 161 n n C9 H92C DCW sing 162 n n C13 H131 DCW sing 163 n n C13 H132 DCW sing 164 n n C10 H101 DCW sing 165 n n C10 H102 DCW sing 166 n n C12 H121 DCW sing 167 n n C12 H122 DCW sing 168 n n C11 H111 DCW sing 169 n n C11 H112 DCW sing 170 n n # _atom_sites.entry_id 2XQT _atom_sites.fract_transf_matrix[1][1] 0.010933 _atom_sites.fract_transf_matrix[1][2] 0.006312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 DCW A 1 1062 1062 DCW DCW . G 3 CVM A 1 1083 1083 CVM CVM . H 3 CVM A 1 1084 1084 CVM CVM . I 3 CVM A 1 1085 1085 CVM CVM . J 3 CVM A 1 1086 1086 CVM CVM . K 3 CVM A 1 1087 1087 CVM CVM . L 3 CVM A 1 1088 1088 CVM CVM . M 3 CVM A 1 1089 1089 CVM CVM . N 3 CVM A 1 1090 1090 CVM CVM . O 3 CVM A 1 1091 1091 CVM CVM . P 3 CVM A 1 1092 1092 CVM CVM . Q 3 CVM A 1 1093 1093 CVM CVM . R 2 DCW B 1 1062 1062 DCW DCW . S 3 CVM B 1 1083 1083 CVM CVM . T 3 CVM B 1 1084 1084 CVM CVM . U 3 CVM B 1 1085 1085 CVM CVM . V 3 CVM B 1 1086 1086 CVM CVM . W 3 CVM B 1 1087 1087 CVM CVM . X 3 CVM B 1 1088 1088 CVM CVM . Y 3 CVM B 1 1089 1089 CVM CVM . Z 2 DCW C 1 1062 1062 DCW DCW . AA 3 CVM C 1 1083 1083 CVM CVM . BA 3 CVM C 1 1084 1084 CVM CVM . CA 3 CVM C 1 1085 1085 CVM CVM . DA 3 CVM C 1 1086 1086 CVM CVM . EA 3 CVM C 1 1087 1087 CVM CVM . FA 3 CVM C 1 1088 1088 CVM CVM . GA 3 CVM C 1 1089 1089 CVM CVM . HA 3 CVM C 1 1090 1090 CVM CVM . IA 3 CVM C 1 1091 1091 CVM CVM . JA 3 CVM C 1 1092 1092 CVM CVM . KA 3 CVM C 1 1093 1093 CVM CVM . LA 3 CVM C 1 1094 1094 CVM CVM . MA 3 CVM C 1 1095 1095 CVM CVM . NA 2 DCW D 1 1062 1062 DCW DCW . OA 3 CVM D 1 1083 1083 CVM CVM . PA 3 CVM D 1 1084 1084 CVM CVM . QA 3 CVM D 1 1085 1085 CVM CVM . RA 3 CVM D 1 1086 1086 CVM CVM . SA 2 DCW E 1 1062 1062 DCW DCW . TA 3 CVM E 1 1083 1083 CVM CVM . UA 3 CVM E 1 1084 1084 CVM CVM . VA 3 CVM E 1 1085 1085 CVM CVM . WA 3 CVM E 1 1086 1086 CVM CVM . XA 3 CVM E 1 1087 1087 CVM CVM . YA 3 CVM E 1 1088 1088 CVM CVM . ZA 3 CVM E 1 1089 1089 CVM CVM . AB 3 CVM E 1 1090 1090 CVM CVM . BB 3 CVM E 1 1091 1091 CVM CVM . CB 3 CVM E 1 1092 1092 CVM CVM . DB 4 HOH A 1 2001 2001 HOH HOH . DB 4 HOH A 2 2002 2002 HOH HOH . DB 4 HOH A 3 2003 2003 HOH HOH . DB 4 HOH A 4 2004 2004 HOH HOH . DB 4 HOH A 5 2005 2005 HOH HOH . DB 4 HOH A 6 2006 2006 HOH HOH . DB 4 HOH A 7 2007 2007 HOH HOH . DB 4 HOH A 8 2008 2008 HOH HOH . DB 4 HOH A 9 2009 2009 HOH HOH . DB 4 HOH A 10 2010 2010 HOH HOH . DB 4 HOH A 11 2011 2011 HOH HOH . DB 4 HOH A 12 2012 2012 HOH HOH . DB 4 HOH A 13 2013 2013 HOH HOH . DB 4 HOH A 14 2014 2014 HOH HOH . DB 4 HOH A 15 2015 2015 HOH HOH . DB 4 HOH A 16 2016 2016 HOH HOH . DB 4 HOH A 17 2017 2017 HOH HOH . EB 4 HOH B 1 2001 2001 HOH HOH . EB 4 HOH B 2 2002 2002 HOH HOH . EB 4 HOH B 3 2003 2003 HOH HOH . EB 4 HOH B 4 2004 2004 HOH HOH . EB 4 HOH B 5 2005 2005 HOH HOH . EB 4 HOH B 6 2006 2006 HOH HOH . EB 4 HOH B 7 2007 2007 HOH HOH . EB 4 HOH B 8 2008 2008 HOH HOH . EB 4 HOH B 9 2009 2009 HOH HOH . EB 4 HOH B 10 2010 2010 HOH HOH . EB 4 HOH B 11 2011 2011 HOH HOH . EB 4 HOH B 12 2012 2012 HOH HOH . EB 4 HOH B 13 2013 2013 HOH HOH . EB 4 HOH B 14 2014 2014 HOH HOH . EB 4 HOH B 15 2015 2015 HOH HOH . EB 4 HOH B 16 2016 2016 HOH HOH . EB 4 HOH B 17 2017 2017 HOH HOH . EB 4 HOH B 18 2018 2018 HOH HOH . EB 4 HOH B 19 2019 2019 HOH HOH . EB 4 HOH B 20 2020 2020 HOH HOH . FB 4 HOH C 1 2001 2001 HOH HOH . FB 4 HOH C 2 2002 2002 HOH HOH . FB 4 HOH C 3 2003 2003 HOH HOH . FB 4 HOH C 4 2004 2004 HOH HOH . FB 4 HOH C 5 2005 2005 HOH HOH . FB 4 HOH C 6 2006 2006 HOH HOH . FB 4 HOH C 7 2007 2007 HOH HOH . FB 4 HOH C 8 2008 2008 HOH HOH . FB 4 HOH C 9 2009 2009 HOH HOH . FB 4 HOH C 10 2010 2010 HOH HOH . FB 4 HOH C 11 2011 2011 HOH HOH . FB 4 HOH C 12 2012 2012 HOH HOH . FB 4 HOH C 13 2013 2013 HOH HOH . FB 4 HOH C 14 2014 2014 HOH HOH . FB 4 HOH C 15 2015 2015 HOH HOH . FB 4 HOH C 16 2016 2016 HOH HOH . FB 4 HOH C 17 2017 2017 HOH HOH . FB 4 HOH C 18 2018 2018 HOH HOH . FB 4 HOH C 19 2019 2019 HOH HOH . FB 4 HOH C 20 2020 2020 HOH HOH . FB 4 HOH C 21 2021 2021 HOH HOH . GB 4 HOH D 1 2001 2001 HOH HOH . GB 4 HOH D 2 2002 2002 HOH HOH . GB 4 HOH D 3 2003 2003 HOH HOH . GB 4 HOH D 4 2004 2004 HOH HOH . GB 4 HOH D 5 2005 2005 HOH HOH . GB 4 HOH D 6 2006 2006 HOH HOH . GB 4 HOH D 7 2007 2007 HOH HOH . GB 4 HOH D 8 2008 2008 HOH HOH . GB 4 HOH D 9 2009 2009 HOH HOH . GB 4 HOH D 10 2010 2010 HOH HOH . GB 4 HOH D 11 2011 2011 HOH HOH . GB 4 HOH D 12 2012 2012 HOH HOH . GB 4 HOH D 13 2013 2013 HOH HOH . GB 4 HOH D 14 2014 2014 HOH HOH . GB 4 HOH D 15 2015 2015 HOH HOH . GB 4 HOH D 16 2016 2016 HOH HOH . GB 4 HOH D 17 2017 2017 HOH HOH . GB 4 HOH D 18 2018 2018 HOH HOH . GB 4 HOH D 19 2019 2019 HOH HOH . GB 4 HOH D 20 2020 2020 HOH HOH . GB 4 HOH D 21 2021 2021 HOH HOH . GB 4 HOH D 22 2022 2022 HOH HOH . HB 4 HOH E 1 2001 2001 HOH HOH . HB 4 HOH E 2 2002 2002 HOH HOH . HB 4 HOH E 3 2003 2003 HOH HOH . HB 4 HOH E 4 2004 2004 HOH HOH . HB 4 HOH E 5 2005 2005 HOH HOH . HB 4 HOH E 6 2006 2006 HOH HOH . HB 4 HOH E 7 2007 2007 HOH HOH . HB 4 HOH E 8 2008 2008 HOH HOH . HB 4 HOH E 9 2009 2009 HOH HOH . HB 4 HOH E 10 2010 2010 HOH HOH . HB 4 HOH E 11 2011 2011 HOH HOH . HB 4 HOH E 12 2012 2012 HOH HOH . HB 4 HOH E 13 2013 2013 HOH HOH . HB 4 HOH E 14 2014 2014 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCW . . . Z 2 41.892 2.999 35.376 0.5 57.71 ? N1 DCW 1062 C 1 HETATM 2 O O1 DCW . . . Z 2 43.129 4.537 34.35 0.5 73.54 ? O1 DCW 1062 C 1 HETATM 3 C C1 DCW . . . Z 2 42.862 3.922 35.372 0.5 66.29 ? C1 DCW 1062 C 1 HETATM 4 C C2 DCW . . . Z 2 40.482 3.447 35.485 0.5 56.83 ? C2 DCW 1062 C 1 HETATM 5 N N2 DCW . . . Z 2 43.537 4.183 36.49 0.5 64.5 ? N2 DCW 1062 C 1 HETATM 6 C C3 DCW . . . Z 2 39.822 2.612 36.584 0.5 56.77 ? C3 DCW 1062 C 1 HETATM 7 C C7 DCW . . . Z 2 40.55 4.903 35.948 0.5 59.01 ? C7 DCW 1062 C 1 HETATM 8 C C4 DCW . . . Z 2 38.537 3.175 37.183 0.5 55.64 ? C4 DCW 1062 C 1 HETATM 9 C C5 DCW . . . Z 2 38.795 4.557 37.73 0.5 55.32 ? C5 DCW 1062 C 1 HETATM 10 C C6 DCW . . . Z 2 39.244 5.412 36.555 0.5 59.02 ? C6 DCW 1062 C 1 HETATM 11 C C8 DCW . . . Z 2 44.885 4.712 36.424 0.5 60.94 ? C8 DCW 1062 C 1 HETATM 12 C C9 DCW . . . Z 2 45.757 3.722 35.667 0.5 54.82 ? C9 DCW 1062 C 1 HETATM 13 C C13 DCW . . . Z 2 44.9 6.054 35.702 0.5 63.16 ? C13 DCW 1062 C 1 HETATM 14 C C10 DCW . . . Z 2 46.984 4.385 35.066 0.5 56.86 ? C10 DCW 1062 C 1 HETATM 15 C C11 DCW . . . Z 2 47.36 5.608 35.883 0.5 61.04 ? C11 DCW 1062 C 1 HETATM 16 C C12 DCW . . . Z 2 46.288 6.678 35.722 0.5 63.65 ? C12 DCW 1062 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #