data_2XQT # _model_server_result.job_id sjjkPsQxqtFq9hp4PNqQaQ _model_server_result.datetime_utc '2024-12-01 09:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LA","auth_seq_id":1094}' # _entry.id 2XQT # _exptl.entry_id 2XQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.546 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYMAL-4 _entity.pdbx_number_of_molecules 45 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XQT _cell.length_a 91.47 _cell.length_b 91.47 _cell.length_c 258.12 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 45.735 -79.215344 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 91.47 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N ? 3 HA N N ? 3 IA N N ? 3 JA N N ? 3 KA N N ? 3 LA N N ? 3 MA N N ? 3 OA N N ? 3 PA N N ? 3 QA N N ? 3 RA N N ? 3 TA N N ? 3 UA N N ? 3 VA N N ? 3 WA N N ? 3 XA N N ? 3 YA N N ? 3 ZA N N ? 3 AB N N ? 3 BB N N ? 3 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A CD GLU 62 A GLU 62 1_555 F N1 DCW . A DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale3 B C FME 1 B FME 1 1_555 B N GLU 2 B GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale4 B CD GLU 62 B GLU 62 1_555 R N1 DCW . B DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 C C FME 1 C FME 1 1_555 C N GLU 2 C GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 C CD GLU 62 C GLU 62 1_555 Z N1 DCW . C DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale7 D C FME 1 D FME 1 1_555 D N GLU 2 D GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 D CD GLU 62 D GLU 62 1_555 NA N1 DCW . D DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale9 E C FME 1 E FME 1 1_555 E N GLU 2 E GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale10 E CD GLU 62 E GLU 62 1_555 SA N1 DCW . E DCW 1062 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C22 H40 O11' _chem_comp.formula_weight 480.546 _chem_comp.id CVM _chem_comp.mon_nstd_flag . _chem_comp.name CYMAL-4 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CVM sing 55 n n C1 O12 CVM sing 56 n n C2 C3 CVM sing 57 n n C3 C4 CVM sing 58 n n C4 C6 CVM sing 59 n n C6 C7 CVM sing 60 n n C6 C11 CVM sing 61 n n C7 C8 CVM sing 62 n n C8 C9 CVM sing 63 n n C9 C10 CVM sing 64 n n C10 C11 CVM sing 65 n n O12 C13 CVM sing 66 n n C13 O14 CVM sing 67 n n C13 C18 CVM sing 68 n n O14 C15 CVM sing 69 n n C15 C16 CVM sing 70 n n C15 C19 CVM sing 71 n n C16 C17 CVM sing 72 n n C16 O23 CVM sing 73 n n C17 C18 CVM sing 74 n n C17 O21 CVM sing 75 n n C18 O22 CVM sing 76 n n C19 O20 CVM sing 77 n n O23 C24 CVM sing 78 n n C24 O25 CVM sing 79 n n C24 C29 CVM sing 80 n n O25 C26 CVM sing 81 n n C26 C27 CVM sing 82 n n C26 C30 CVM sing 83 n n C27 C28 CVM sing 84 n n C27 O32 CVM sing 85 n n C28 C29 CVM sing 86 n n C28 O33 CVM sing 87 n n C29 O34 CVM sing 88 n n C30 O31 CVM sing 89 n n C1 H11C CVM sing 90 n n C1 H12C CVM sing 91 n n C2 H21C CVM sing 92 n n C2 H22C CVM sing 93 n n C3 H31C CVM sing 94 n n C3 H32C CVM sing 95 n n C4 H41C CVM sing 96 n n C4 H42C CVM sing 97 n n C6 H6 CVM sing 98 n n C7 H71C CVM sing 99 n n C7 H72C CVM sing 100 n n C11 H111 CVM sing 101 n n C11 H112 CVM sing 102 n n C8 H81C CVM sing 103 n n C8 H82C CVM sing 104 n n C9 H91C CVM sing 105 n n C9 H92C CVM sing 106 n n C10 H101 CVM sing 107 n n C10 H102 CVM sing 108 n n C13 H13 CVM sing 109 n n C18 H18 CVM sing 110 n n C15 H15 CVM sing 111 n n C16 H16 CVM sing 112 n n C19 H191 CVM sing 113 n n C19 H192 CVM sing 114 n n C17 H17 CVM sing 115 n n O21 H21 CVM sing 116 n n O22 H22 CVM sing 117 n n O20 H20 CVM sing 118 n n C24 H24 CVM sing 119 n n C29 H29 CVM sing 120 n n C26 H26 CVM sing 121 n n C27 H27 CVM sing 122 n n C30 H301 CVM sing 123 n n C30 H302 CVM sing 124 n n C28 H28 CVM sing 125 n n O32 H32 CVM sing 126 n n O33 H33 CVM sing 127 n n O34 H34 CVM sing 128 n n O31 H31 CVM sing 129 n n # _atom_sites.entry_id 2XQT _atom_sites.fract_transf_matrix[1][1] 0.010933 _atom_sites.fract_transf_matrix[1][2] 0.006312 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003874 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 DCW A 1 1062 1062 DCW DCW . G 3 CVM A 1 1083 1083 CVM CVM . H 3 CVM A 1 1084 1084 CVM CVM . I 3 CVM A 1 1085 1085 CVM CVM . J 3 CVM A 1 1086 1086 CVM CVM . K 3 CVM A 1 1087 1087 CVM CVM . L 3 CVM A 1 1088 1088 CVM CVM . M 3 CVM A 1 1089 1089 CVM CVM . N 3 CVM A 1 1090 1090 CVM CVM . O 3 CVM A 1 1091 1091 CVM CVM . P 3 CVM A 1 1092 1092 CVM CVM . Q 3 CVM A 1 1093 1093 CVM CVM . R 2 DCW B 1 1062 1062 DCW DCW . S 3 CVM B 1 1083 1083 CVM CVM . T 3 CVM B 1 1084 1084 CVM CVM . U 3 CVM B 1 1085 1085 CVM CVM . V 3 CVM B 1 1086 1086 CVM CVM . W 3 CVM B 1 1087 1087 CVM CVM . X 3 CVM B 1 1088 1088 CVM CVM . Y 3 CVM B 1 1089 1089 CVM CVM . Z 2 DCW C 1 1062 1062 DCW DCW . AA 3 CVM C 1 1083 1083 CVM CVM . BA 3 CVM C 1 1084 1084 CVM CVM . CA 3 CVM C 1 1085 1085 CVM CVM . DA 3 CVM C 1 1086 1086 CVM CVM . EA 3 CVM C 1 1087 1087 CVM CVM . FA 3 CVM C 1 1088 1088 CVM CVM . GA 3 CVM C 1 1089 1089 CVM CVM . HA 3 CVM C 1 1090 1090 CVM CVM . IA 3 CVM C 1 1091 1091 CVM CVM . JA 3 CVM C 1 1092 1092 CVM CVM . KA 3 CVM C 1 1093 1093 CVM CVM . LA 3 CVM C 1 1094 1094 CVM CVM . MA 3 CVM C 1 1095 1095 CVM CVM . NA 2 DCW D 1 1062 1062 DCW DCW . OA 3 CVM D 1 1083 1083 CVM CVM . PA 3 CVM D 1 1084 1084 CVM CVM . QA 3 CVM D 1 1085 1085 CVM CVM . RA 3 CVM D 1 1086 1086 CVM CVM . SA 2 DCW E 1 1062 1062 DCW DCW . TA 3 CVM E 1 1083 1083 CVM CVM . UA 3 CVM E 1 1084 1084 CVM CVM . VA 3 CVM E 1 1085 1085 CVM CVM . WA 3 CVM E 1 1086 1086 CVM CVM . XA 3 CVM E 1 1087 1087 CVM CVM . YA 3 CVM E 1 1088 1088 CVM CVM . ZA 3 CVM E 1 1089 1089 CVM CVM . AB 3 CVM E 1 1090 1090 CVM CVM . BB 3 CVM E 1 1091 1091 CVM CVM . CB 3 CVM E 1 1092 1092 CVM CVM . DB 4 HOH A 1 2001 2001 HOH HOH . DB 4 HOH A 2 2002 2002 HOH HOH . DB 4 HOH A 3 2003 2003 HOH HOH . DB 4 HOH A 4 2004 2004 HOH HOH . DB 4 HOH A 5 2005 2005 HOH HOH . DB 4 HOH A 6 2006 2006 HOH HOH . DB 4 HOH A 7 2007 2007 HOH HOH . DB 4 HOH A 8 2008 2008 HOH HOH . DB 4 HOH A 9 2009 2009 HOH HOH . DB 4 HOH A 10 2010 2010 HOH HOH . DB 4 HOH A 11 2011 2011 HOH HOH . DB 4 HOH A 12 2012 2012 HOH HOH . DB 4 HOH A 13 2013 2013 HOH HOH . DB 4 HOH A 14 2014 2014 HOH HOH . DB 4 HOH A 15 2015 2015 HOH HOH . DB 4 HOH A 16 2016 2016 HOH HOH . DB 4 HOH A 17 2017 2017 HOH HOH . EB 4 HOH B 1 2001 2001 HOH HOH . EB 4 HOH B 2 2002 2002 HOH HOH . EB 4 HOH B 3 2003 2003 HOH HOH . EB 4 HOH B 4 2004 2004 HOH HOH . EB 4 HOH B 5 2005 2005 HOH HOH . EB 4 HOH B 6 2006 2006 HOH HOH . EB 4 HOH B 7 2007 2007 HOH HOH . EB 4 HOH B 8 2008 2008 HOH HOH . EB 4 HOH B 9 2009 2009 HOH HOH . EB 4 HOH B 10 2010 2010 HOH HOH . EB 4 HOH B 11 2011 2011 HOH HOH . EB 4 HOH B 12 2012 2012 HOH HOH . EB 4 HOH B 13 2013 2013 HOH HOH . EB 4 HOH B 14 2014 2014 HOH HOH . EB 4 HOH B 15 2015 2015 HOH HOH . EB 4 HOH B 16 2016 2016 HOH HOH . EB 4 HOH B 17 2017 2017 HOH HOH . EB 4 HOH B 18 2018 2018 HOH HOH . EB 4 HOH B 19 2019 2019 HOH HOH . EB 4 HOH B 20 2020 2020 HOH HOH . FB 4 HOH C 1 2001 2001 HOH HOH . FB 4 HOH C 2 2002 2002 HOH HOH . FB 4 HOH C 3 2003 2003 HOH HOH . FB 4 HOH C 4 2004 2004 HOH HOH . FB 4 HOH C 5 2005 2005 HOH HOH . FB 4 HOH C 6 2006 2006 HOH HOH . FB 4 HOH C 7 2007 2007 HOH HOH . FB 4 HOH C 8 2008 2008 HOH HOH . FB 4 HOH C 9 2009 2009 HOH HOH . FB 4 HOH C 10 2010 2010 HOH HOH . FB 4 HOH C 11 2011 2011 HOH HOH . FB 4 HOH C 12 2012 2012 HOH HOH . FB 4 HOH C 13 2013 2013 HOH HOH . FB 4 HOH C 14 2014 2014 HOH HOH . FB 4 HOH C 15 2015 2015 HOH HOH . FB 4 HOH C 16 2016 2016 HOH HOH . FB 4 HOH C 17 2017 2017 HOH HOH . FB 4 HOH C 18 2018 2018 HOH HOH . FB 4 HOH C 19 2019 2019 HOH HOH . FB 4 HOH C 20 2020 2020 HOH HOH . FB 4 HOH C 21 2021 2021 HOH HOH . GB 4 HOH D 1 2001 2001 HOH HOH . GB 4 HOH D 2 2002 2002 HOH HOH . GB 4 HOH D 3 2003 2003 HOH HOH . GB 4 HOH D 4 2004 2004 HOH HOH . GB 4 HOH D 5 2005 2005 HOH HOH . GB 4 HOH D 6 2006 2006 HOH HOH . GB 4 HOH D 7 2007 2007 HOH HOH . GB 4 HOH D 8 2008 2008 HOH HOH . GB 4 HOH D 9 2009 2009 HOH HOH . GB 4 HOH D 10 2010 2010 HOH HOH . GB 4 HOH D 11 2011 2011 HOH HOH . GB 4 HOH D 12 2012 2012 HOH HOH . GB 4 HOH D 13 2013 2013 HOH HOH . GB 4 HOH D 14 2014 2014 HOH HOH . GB 4 HOH D 15 2015 2015 HOH HOH . GB 4 HOH D 16 2016 2016 HOH HOH . GB 4 HOH D 17 2017 2017 HOH HOH . GB 4 HOH D 18 2018 2018 HOH HOH . GB 4 HOH D 19 2019 2019 HOH HOH . GB 4 HOH D 20 2020 2020 HOH HOH . GB 4 HOH D 21 2021 2021 HOH HOH . GB 4 HOH D 22 2022 2022 HOH HOH . HB 4 HOH E 1 2001 2001 HOH HOH . HB 4 HOH E 2 2002 2002 HOH HOH . HB 4 HOH E 3 2003 2003 HOH HOH . HB 4 HOH E 4 2004 2004 HOH HOH . HB 4 HOH E 5 2005 2005 HOH HOH . HB 4 HOH E 6 2006 2006 HOH HOH . HB 4 HOH E 7 2007 2007 HOH HOH . HB 4 HOH E 8 2008 2008 HOH HOH . HB 4 HOH E 9 2009 2009 HOH HOH . HB 4 HOH E 10 2010 2010 HOH HOH . HB 4 HOH E 11 2011 2011 HOH HOH . HB 4 HOH E 12 2012 2012 HOH HOH . HB 4 HOH E 13 2013 2013 HOH HOH . HB 4 HOH E 14 2014 2014 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 CVM . . . LA 3 41.106 8.713 44.966 1 108.35 ? C3 CVM 1094 C 1 HETATM 2 C C4 CVM . . . LA 3 41.862 8.902 43.652 1 109.86 ? C4 CVM 1094 C 1 HETATM 3 C C6 CVM . . . LA 3 41.113 8.324 42.446 1 110.41 ? C6 CVM 1094 C 1 HETATM 4 C C7 CVM . . . LA 3 40.066 7.305 42.893 1 109.37 ? C7 CVM 1094 C 1 HETATM 5 C C8 CVM . . . LA 3 39.332 6.683 41.707 1 108.39 ? C8 CVM 1094 C 1 HETATM 6 C C9 CVM . . . LA 3 39.88 7.192 40.376 1 110.16 ? C9 CVM 1094 C 1 HETATM 7 C C10 CVM . . . LA 3 41.392 7.012 40.29 1 110.29 ? C10 CVM 1094 C 1 HETATM 8 C C11 CVM . . . LA 3 42.097 7.653 41.485 1 110.46 ? C11 CVM 1094 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 8 #