data_2XQU # _model_server_result.job_id YRARBYnq0_2_AB_CuynZGw _model_server_result.datetime_utc '2024-11-05 21:09:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":104}' # _entry.id 2XQU # _exptl.entry_id 2XQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CYMAL-4 _entity.pdbx_number_of_molecules 55 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XQU _cell.length_a 93.89 _cell.length_b 93.89 _cell.length_c 257.32 _cell.Z_PDB 60 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentadecameric _pdbx_struct_assembly.oligomeric_count 15 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -46.945 81.311125 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -93.89 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N ? 2 WA N N ? 2 XA N N ? 2 YA N N ? 2 ZA N N ? 2 AB N N ? 2 BB N N ? 2 CB N N ? 2 DB N N ? 2 EB N N ? 2 FB N N ? 2 GB N N ? 2 HB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 A FME 1 1_555 A N GLU 2 A GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 B C FME 1 B FME 1 1_555 B N GLU 2 B GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 C C FME 1 C FME 1 1_555 C N GLU 2 C GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 D C FME 1 D FME 1 1_555 D N GLU 2 D GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 E C FME 1 E FME 1 1_555 E N GLU 2 E GLU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C22 H40 O11' _chem_comp.formula_weight 480.546 _chem_comp.id CVM _chem_comp.mon_nstd_flag . _chem_comp.name CYMAL-4 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CVM sing 55 n n C1 O12 CVM sing 56 n n C2 C3 CVM sing 57 n n C3 C4 CVM sing 58 n n C4 C6 CVM sing 59 n n C6 C7 CVM sing 60 n n C6 C11 CVM sing 61 n n C7 C8 CVM sing 62 n n C8 C9 CVM sing 63 n n C9 C10 CVM sing 64 n n C10 C11 CVM sing 65 n n O12 C13 CVM sing 66 n n C13 O14 CVM sing 67 n n C13 C18 CVM sing 68 n n O14 C15 CVM sing 69 n n C15 C16 CVM sing 70 n n C15 C19 CVM sing 71 n n C16 C17 CVM sing 72 n n C16 O23 CVM sing 73 n n C17 C18 CVM sing 74 n n C17 O21 CVM sing 75 n n C18 O22 CVM sing 76 n n C19 O20 CVM sing 77 n n O23 C24 CVM sing 78 n n C24 O25 CVM sing 79 n n C24 C29 CVM sing 80 n n O25 C26 CVM sing 81 n n C26 C27 CVM sing 82 n n C26 C30 CVM sing 83 n n C27 C28 CVM sing 84 n n C27 O32 CVM sing 85 n n C28 C29 CVM sing 86 n n C28 O33 CVM sing 87 n n C29 O34 CVM sing 88 n n C30 O31 CVM sing 89 n n C1 H11C CVM sing 90 n n C1 H12C CVM sing 91 n n C2 H21C CVM sing 92 n n C2 H22C CVM sing 93 n n C3 H31C CVM sing 94 n n C3 H32C CVM sing 95 n n C4 H41C CVM sing 96 n n C4 H42C CVM sing 97 n n C6 H6 CVM sing 98 n n C7 H71C CVM sing 99 n n C7 H72C CVM sing 100 n n C11 H111 CVM sing 101 n n C11 H112 CVM sing 102 n n C8 H81C CVM sing 103 n n C8 H82C CVM sing 104 n n C9 H91C CVM sing 105 n n C9 H92C CVM sing 106 n n C10 H101 CVM sing 107 n n C10 H102 CVM sing 108 n n C13 H13 CVM sing 109 n n C18 H18 CVM sing 110 n n C15 H15 CVM sing 111 n n C16 H16 CVM sing 112 n n C19 H191 CVM sing 113 n n C19 H192 CVM sing 114 n n C17 H17 CVM sing 115 n n O21 H21 CVM sing 116 n n O22 H22 CVM sing 117 n n O20 H20 CVM sing 118 n n C24 H24 CVM sing 119 n n C29 H29 CVM sing 120 n n C26 H26 CVM sing 121 n n C27 H27 CVM sing 122 n n C30 H301 CVM sing 123 n n C30 H302 CVM sing 124 n n C28 H28 CVM sing 125 n n O32 H32 CVM sing 126 n n O33 H33 CVM sing 127 n n O34 H34 CVM sing 128 n n O31 H31 CVM sing 129 n n # _atom_sites.entry_id 2XQU _atom_sites.fract_transf_matrix[1][1] 0.010651 _atom_sites.fract_transf_matrix[1][2] 0.006149 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 CVM A 1 102 102 CVM CVM . G 2 CVM A 1 103 103 CVM CVM . H 2 CVM A 1 104 104 CVM CVM . I 2 CVM A 1 106 106 CVM CVM . J 2 CVM A 1 107 107 CVM CVM . K 2 CVM A 1 108 108 CVM CVM . L 2 CVM A 1 109 109 CVM CVM . M 2 CVM A 1 110 110 CVM CVM . N 2 CVM A 1 111 111 CVM CVM . O 2 CVM A 1 112 112 CVM CVM . P 2 CVM A 1 113 113 CVM CVM . Q 2 CVM B 1 102 102 CVM CVM . R 2 CVM B 1 103 103 CVM CVM . S 2 CVM B 1 104 104 CVM CVM . T 2 CVM B 1 106 106 CVM CVM . U 2 CVM B 1 107 107 CVM CVM . V 2 CVM B 1 108 108 CVM CVM . W 2 CVM B 1 109 109 CVM CVM . X 2 CVM B 1 110 110 CVM CVM . Y 2 CVM B 1 111 111 CVM CVM . Z 2 CVM B 1 112 112 CVM CVM . AA 2 CVM B 1 113 113 CVM CVM . BA 2 CVM C 1 102 102 CVM CVM . CA 2 CVM C 1 103 103 CVM CVM . DA 2 CVM C 1 104 104 CVM CVM . EA 2 CVM C 1 106 106 CVM CVM . FA 2 CVM C 1 107 107 CVM CVM . GA 2 CVM C 1 108 108 CVM CVM . HA 2 CVM C 1 109 109 CVM CVM . IA 2 CVM C 1 110 110 CVM CVM . JA 2 CVM C 1 111 111 CVM CVM . KA 2 CVM C 1 112 112 CVM CVM . LA 2 CVM C 1 113 113 CVM CVM . MA 2 CVM D 1 102 102 CVM CVM . NA 2 CVM D 1 103 103 CVM CVM . OA 2 CVM D 1 104 104 CVM CVM . PA 2 CVM D 1 106 106 CVM CVM . QA 2 CVM D 1 107 107 CVM CVM . RA 2 CVM D 1 108 108 CVM CVM . SA 2 CVM D 1 109 109 CVM CVM . TA 2 CVM D 1 110 110 CVM CVM . UA 2 CVM D 1 111 111 CVM CVM . VA 2 CVM D 1 112 112 CVM CVM . WA 2 CVM D 1 113 113 CVM CVM . XA 2 CVM E 1 102 102 CVM CVM . YA 2 CVM E 1 103 103 CVM CVM . ZA 2 CVM E 1 104 104 CVM CVM . AB 2 CVM E 1 106 106 CVM CVM . BB 2 CVM E 1 107 107 CVM CVM . CB 2 CVM E 1 108 108 CVM CVM . DB 2 CVM E 1 109 109 CVM CVM . EB 2 CVM E 1 110 110 CVM CVM . FB 2 CVM E 1 111 111 CVM CVM . GB 2 CVM E 1 112 112 CVM CVM . HB 2 CVM E 1 113 113 CVM CVM . IB 3 HOH A 1 2001 2001 HOH HOH . IB 3 HOH A 2 2002 2002 HOH HOH . IB 3 HOH A 3 2003 2003 HOH HOH . IB 3 HOH A 4 2004 2004 HOH HOH . IB 3 HOH A 5 2005 2005 HOH HOH . IB 3 HOH A 6 2006 2006 HOH HOH . IB 3 HOH A 7 2007 2007 HOH HOH . IB 3 HOH A 8 2008 2008 HOH HOH . IB 3 HOH A 9 2009 2009 HOH HOH . IB 3 HOH A 10 2010 2010 HOH HOH . IB 3 HOH A 11 2011 2011 HOH HOH . IB 3 HOH A 12 2012 2012 HOH HOH . IB 3 HOH A 13 2013 2013 HOH HOH . IB 3 HOH A 14 2014 2014 HOH HOH . IB 3 HOH A 15 2015 2015 HOH HOH . IB 3 HOH A 16 2016 2016 HOH HOH . IB 3 HOH A 17 2017 2017 HOH HOH . IB 3 HOH A 18 2018 2018 HOH HOH . IB 3 HOH A 19 2019 2019 HOH HOH . IB 3 HOH A 20 2020 2020 HOH HOH . IB 3 HOH A 21 2021 2021 HOH HOH . IB 3 HOH A 22 2022 2022 HOH HOH . JB 3 HOH B 1 2001 2001 HOH HOH . JB 3 HOH B 2 2002 2002 HOH HOH . JB 3 HOH B 3 2003 2003 HOH HOH . JB 3 HOH B 4 2004 2004 HOH HOH . JB 3 HOH B 5 2005 2005 HOH HOH . JB 3 HOH B 6 2006 2006 HOH HOH . JB 3 HOH B 7 2007 2007 HOH HOH . JB 3 HOH B 8 2008 2008 HOH HOH . JB 3 HOH B 9 2009 2009 HOH HOH . JB 3 HOH B 10 2010 2010 HOH HOH . JB 3 HOH B 11 2011 2011 HOH HOH . JB 3 HOH B 12 2012 2012 HOH HOH . JB 3 HOH B 13 2013 2013 HOH HOH . JB 3 HOH B 14 2014 2014 HOH HOH . JB 3 HOH B 15 2015 2015 HOH HOH . JB 3 HOH B 16 2016 2016 HOH HOH . JB 3 HOH B 17 2017 2017 HOH HOH . JB 3 HOH B 18 2018 2018 HOH HOH . JB 3 HOH B 19 2019 2019 HOH HOH . JB 3 HOH B 20 2020 2020 HOH HOH . JB 3 HOH B 21 2021 2021 HOH HOH . KB 3 HOH C 1 2001 2001 HOH HOH . KB 3 HOH C 2 2002 2002 HOH HOH . KB 3 HOH C 3 2003 2003 HOH HOH . KB 3 HOH C 4 2004 2004 HOH HOH . KB 3 HOH C 5 2005 2005 HOH HOH . KB 3 HOH C 6 2006 2006 HOH HOH . KB 3 HOH C 7 2007 2007 HOH HOH . KB 3 HOH C 8 2008 2008 HOH HOH . KB 3 HOH C 9 2009 2009 HOH HOH . KB 3 HOH C 10 2010 2010 HOH HOH . KB 3 HOH C 11 2011 2011 HOH HOH . KB 3 HOH C 12 2012 2012 HOH HOH . KB 3 HOH C 13 2013 2013 HOH HOH . KB 3 HOH C 14 2014 2014 HOH HOH . KB 3 HOH C 15 2015 2015 HOH HOH . KB 3 HOH C 16 2016 2016 HOH HOH . KB 3 HOH C 17 2017 2017 HOH HOH . KB 3 HOH C 18 2018 2018 HOH HOH . KB 3 HOH C 19 2019 2019 HOH HOH . KB 3 HOH C 20 2020 2020 HOH HOH . KB 3 HOH C 21 2021 2021 HOH HOH . KB 3 HOH C 22 2022 2022 HOH HOH . KB 3 HOH C 23 2023 2023 HOH HOH . KB 3 HOH C 24 2024 2024 HOH HOH . KB 3 HOH C 25 2025 2025 HOH HOH . KB 3 HOH C 26 2026 2026 HOH HOH . KB 3 HOH C 27 2027 2027 HOH HOH . KB 3 HOH C 28 2028 2028 HOH HOH . KB 3 HOH C 29 2029 2029 HOH HOH . LB 3 HOH D 1 2001 2001 HOH HOH . LB 3 HOH D 2 2002 2002 HOH HOH . LB 3 HOH D 3 2003 2003 HOH HOH . LB 3 HOH D 4 2004 2004 HOH HOH . LB 3 HOH D 5 2005 2005 HOH HOH . LB 3 HOH D 6 2006 2006 HOH HOH . LB 3 HOH D 7 2007 2007 HOH HOH . LB 3 HOH D 8 2008 2008 HOH HOH . LB 3 HOH D 9 2009 2009 HOH HOH . LB 3 HOH D 10 2010 2010 HOH HOH . LB 3 HOH D 11 2011 2011 HOH HOH . LB 3 HOH D 12 2012 2012 HOH HOH . LB 3 HOH D 13 2013 2013 HOH HOH . LB 3 HOH D 14 2014 2014 HOH HOH . LB 3 HOH D 15 2015 2015 HOH HOH . LB 3 HOH D 16 2016 2016 HOH HOH . LB 3 HOH D 17 2017 2017 HOH HOH . LB 3 HOH D 18 2018 2018 HOH HOH . LB 3 HOH D 19 2019 2019 HOH HOH . LB 3 HOH D 20 2020 2020 HOH HOH . LB 3 HOH D 21 2021 2021 HOH HOH . LB 3 HOH D 22 2022 2022 HOH HOH . LB 3 HOH D 23 2023 2023 HOH HOH . LB 3 HOH D 24 2024 2024 HOH HOH . MB 3 HOH E 1 2001 2001 HOH HOH . MB 3 HOH E 2 2002 2002 HOH HOH . MB 3 HOH E 3 2003 2003 HOH HOH . MB 3 HOH E 4 2004 2004 HOH HOH . MB 3 HOH E 5 2005 2005 HOH HOH . MB 3 HOH E 6 2006 2006 HOH HOH . MB 3 HOH E 7 2007 2007 HOH HOH . MB 3 HOH E 8 2008 2008 HOH HOH . MB 3 HOH E 9 2009 2009 HOH HOH . MB 3 HOH E 10 2010 2010 HOH HOH . MB 3 HOH E 11 2011 2011 HOH HOH . MB 3 HOH E 12 2012 2012 HOH HOH . MB 3 HOH E 13 2013 2013 HOH HOH . MB 3 HOH E 14 2014 2014 HOH HOH . MB 3 HOH E 15 2015 2015 HOH HOH . MB 3 HOH E 16 2016 2016 HOH HOH . MB 3 HOH E 17 2017 2017 HOH HOH . MB 3 HOH E 18 2018 2018 HOH HOH . MB 3 HOH E 19 2019 2019 HOH HOH . MB 3 HOH E 20 2020 2020 HOH HOH . MB 3 HOH E 21 2021 2021 HOH HOH . MB 3 HOH E 22 2022 2022 HOH HOH . MB 3 HOH E 23 2023 2023 HOH HOH . MB 3 HOH E 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 CVM . . . DA 2 -48.406 -7.402 31.123 1 80.72 ? C4 CVM 104 C 1 HETATM 2 C C6 CVM . . . DA 2 -49.161 -6.104 31.389 1 78.42 ? C6 CVM 104 C 1 HETATM 3 C C7 CVM . . . DA 2 -50.558 -6.417 31.916 1 72.22 ? C7 CVM 104 C 1 HETATM 4 C C8 CVM . . . DA 2 -51.362 -5.139 32.128 1 65.84 ? C8 CVM 104 C 1 HETATM 5 C C9 CVM . . . DA 2 -50.537 -3.913 31.756 1 62.94 ? C9 CVM 104 C 1 HETATM 6 C C10 CVM . . . DA 2 -50.054 -4.013 30.315 1 73.26 ? C10 CVM 104 C 1 HETATM 7 C C11 CVM . . . DA 2 -49.272 -5.303 30.095 1 79.08 ? C11 CVM 104 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #