data_2XRM
#
_model_server_result.job_id            mSdp9Cv-jxKAKuamDWARcA 
_model_server_result.datetime_utc      '2025-01-10 11:58:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xrm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":410}' 
#
_entry.id    2XRM 
#
_exptl.entry_id    2XRM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.278 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2XRM 
_cell.length_a            132.982 
_cell.length_b            132.982 
_cell.length_c            132.982 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XRM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -132.982 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 2 A GLU 20 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? 
metalc ? metalc2 A OD1 ASP 40 A ASP 58 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc3 A OD2 ASP 40 A ASP 58 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? 
metalc ? metalc4 A O ALA 79 A ALA 97 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc5 A OG1 THR 81 A THR 99 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 A O SER 83 A SER 101 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc7 A O VAL 85 A VAL 103 1_555 B NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc8 A OD2 ASP 168 A ASP 186 1_555 D CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? 
metalc ? metalc9 A O ARG 170 A ARG 188 1_555 D CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc10 A O THR 173 A THR 191 1_555 D CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc11 A OE2 GLU 175 A GLU 193 1_555 D CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc12 A OE1 GLU 175 A GLU 193 1_555 D CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc13 A O ASN 183 A ASN 201 1_555 C SR SR . A SR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc14 A O VAL 185 A VAL 203 1_555 C SR SR . A SR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc15 A OG1 THR 203 A THR 221 1_555 D CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc16 A OD2 ASP 208 A ASP 226 1_555 C SR SR . A SR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc17 A OD1 ASP 208 A ASP 226 1_555 C SR SR . A SR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc18 C SR SR . A SR 403 1_555 E OH4 1PE . A 1PE 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
metalc ? metalc19 C SR SR . A SR 403 1_555 E OH6 1PE . A 1PE 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc20 D CA CA . A CA 405 1_555 F O HOH . A HOH 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
#
_chem_comp.formula           'C10 H22 O6' 
_chem_comp.formula_weight    238.278 
_chem_comp.id                1PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PEG400 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH2 C12 1PE sing 1 n n 
OH2 HO2 1PE sing 2 n n 
C12 C22 1PE sing 3 n n 
C12 H121 1PE sing 4 n n 
C12 H122 1PE sing 5 n n 
C22 OH3 1PE sing 6 n n 
C22 H221 1PE sing 7 n n 
C22 H222 1PE sing 8 n n 
OH3 C23 1PE sing 9 n n 
C13 C23 1PE sing 10 n n 
C13 OH4 1PE sing 11 n n 
C13 H131 1PE sing 12 n n 
C13 H132 1PE sing 13 n n 
C23 H231 1PE sing 14 n n 
C23 H232 1PE sing 15 n n 
OH4 C24 1PE sing 16 n n 
C14 C24 1PE sing 17 n n 
C14 OH5 1PE sing 18 n n 
C14 H141 1PE sing 19 n n 
C14 H142 1PE sing 20 n n 
C24 H241 1PE sing 21 n n 
C24 H242 1PE sing 22 n n 
OH5 C25 1PE sing 23 n n 
C15 C25 1PE sing 24 n n 
C15 OH6 1PE sing 25 n n 
C15 H151 1PE sing 26 n n 
C15 H152 1PE sing 27 n n 
C25 H251 1PE sing 28 n n 
C25 H252 1PE sing 29 n n 
OH6 C26 1PE sing 30 n n 
C16 C26 1PE sing 31 n n 
C16 OH7 1PE sing 32 n n 
C16 H161 1PE sing 33 n n 
C16 H162 1PE sing 34 n n 
C26 H261 1PE sing 35 n n 
C26 H262 1PE sing 36 n n 
OH7 HO7 1PE sing 37 n n 
#
_atom_sites.entry_id                     2XRM 
_atom_sites.fract_transf_matrix[1][1]    0.00752 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00752 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00752 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 401 401 NA NA . 
C 3 SR A 1 403 403 SR SR . 
D 4 CA A 1 405 405 CA CA . 
E 5 1PE A 1 410 410 1PE 1PE . 
F 6 HOH A 1 2001 2001 HOH HOH . 
F 6 HOH A 2 2002 2002 HOH HOH . 
F 6 HOH A 3 2003 2003 HOH HOH . 
F 6 HOH A 4 2004 2004 HOH HOH . 
F 6 HOH A 5 2005 2005 HOH HOH . 
F 6 HOH A 6 2006 2006 HOH HOH . 
F 6 HOH A 7 2007 2007 HOH HOH . 
F 6 HOH A 8 2008 2008 HOH HOH . 
F 6 HOH A 9 2009 2009 HOH HOH . 
F 6 HOH A 10 2010 2010 HOH HOH . 
F 6 HOH A 11 2011 2011 HOH HOH . 
F 6 HOH A 12 2012 2012 HOH HOH . 
F 6 HOH A 13 2013 2013 HOH HOH . 
F 6 HOH A 14 2014 2014 HOH HOH . 
F 6 HOH A 15 2015 2015 HOH HOH . 
F 6 HOH A 16 2016 2016 HOH HOH . 
F 6 HOH A 17 2017 2017 HOH HOH . 
F 6 HOH A 18 2018 2018 HOH HOH . 
F 6 HOH A 19 2019 2019 HOH HOH . 
F 6 HOH A 20 2020 2020 HOH HOH . 
F 6 HOH A 21 2021 2021 HOH HOH . 
F 6 HOH A 22 2022 2022 HOH HOH . 
F 6 HOH A 23 2023 2023 HOH HOH . 
F 6 HOH A 24 2024 2024 HOH HOH . 
F 6 HOH A 25 2025 2025 HOH HOH . 
F 6 HOH A 26 2026 2026 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH2 1PE . . . E 5 -12.83 -59.423 -6.54 1 61.85 ? OH2 1PE 410 A 1 
HETATM 2 C C12 1PE . . . E 5 -13.564 -60.657 -6.413 1 68.37 ? C12 1PE 410 A 1 
HETATM 3 C C22 1PE . . . E 5 -13.48 -61.316 -5.006 1 71.38 ? C22 1PE 410 A 1 
HETATM 4 O OH3 1PE . . . E 5 -13.457 -62.816 -4.99 1 74.85 ? OH3 1PE 410 A 1 
HETATM 5 C C13 1PE . . . E 5 -14.161 -65.054 -5.846 1 59.49 ? C13 1PE 410 A 1 
HETATM 6 C C23 1PE . . . E 5 -14.127 -63.534 -6.105 1 65.25 ? C23 1PE 410 A 1 
HETATM 7 O OH4 1PE . . . E 5 -15.257 -65.392 -6.663 1 48.7 ? OH4 1PE 410 A 1 
HETATM 8 C C14 1PE . . . E 5 -15.158 -67.289 -7.937 1 47.75 ? C14 1PE 410 A 1 
HETATM 9 C C24 1PE . . . E 5 -15.375 -66.769 -6.555 1 48.53 ? C24 1PE 410 A 1 
HETATM 10 O OH5 1PE . . . E 5 -16.1 -66.991 -8.99 1 53.56 ? OH5 1PE 410 A 1 
HETATM 11 C C15 1PE . . . E 5 -15.934 -66.405 -11.628 1 59.75 ? C15 1PE 410 A 1 
HETATM 12 C C25 1PE . . . E 5 -15.7 -67.385 -10.413 1 52.48 ? C25 1PE 410 A 1 
HETATM 13 O OH6 1PE . . . E 5 -15.018 -65.29 -12.161 1 59.9 ? OH6 1PE 410 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#