data_2XSB
#
_model_server_result.job_id            MQ9qOBj1BJS9JI04owqmQA 
_model_server_result.datetime_utc      '2024-10-15 12:23:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xsb 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1436}' 
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_entry.id    2XSB 
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_exptl.entry_id    2XSB 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              219.192 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          104.01 
_cell.angle_gamma         90 
_cell.entry_id            2XSB 
_cell.length_a            84.583 
_cell.length_b            96.289 
_cell.length_c            59.973 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2XSB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
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_chem_comp.formula           'C8 H13 N O6' 
_chem_comp.formula_weight    219.192 
_chem_comp.id                GDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(acetylamido)-2-deoxy-D-glucono-1,5-lactone 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     2-ACETAMIDO-2-DEOXY-D-GLUCONO-1,5-LACTONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GDL sing 83 n n 
C1 O1 GDL doub 84 n n 
C1 O5 GDL sing 85 n n 
C2 C3 GDL sing 86 n n 
C2 N2 GDL sing 87 n n 
C2 H2 GDL sing 88 n n 
C3 C4 GDL sing 89 n n 
C3 O3 GDL sing 90 n n 
C3 H3 GDL sing 91 n n 
C4 C5 GDL sing 92 n n 
C4 O4 GDL sing 93 n n 
C4 H4 GDL sing 94 n n 
C5 C6 GDL sing 95 n n 
C5 O5 GDL sing 96 n n 
C5 H5 GDL sing 97 n n 
C6 O6 GDL sing 98 n n 
C6 H61 GDL sing 99 n n 
C6 H62 GDL sing 100 n n 
C7 C8 GDL sing 101 n n 
C7 N2 GDL sing 102 n n 
C7 O7 GDL doub 103 n n 
C8 H81 GDL sing 104 n n 
C8 H82 GDL sing 105 n n 
C8 H83 GDL sing 106 n n 
N2 HN2 GDL sing 107 n n 
O3 HO3 GDL sing 108 n n 
O4 HO4 GDL sing 109 n n 
O6 HO6 GDL sing 110 n n 
#
_atom_sites.entry_id                     2XSB 
_atom_sites.fract_transf_matrix[1][1]    0.011823 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00295 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010385 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDL A 1 1436 1436 GDL GDL . 
C 3 CL A 1 1437 1437 CL CL . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
D 4 HOH A 37 2037 2037 HOH HOH . 
D 4 HOH A 38 2038 2038 HOH HOH . 
D 4 HOH A 39 2039 2039 HOH HOH . 
D 4 HOH A 40 2040 2040 HOH HOH . 
D 4 HOH A 41 2041 2041 HOH HOH . 
D 4 HOH A 42 2042 2042 HOH HOH . 
D 4 HOH A 43 2043 2043 HOH HOH . 
D 4 HOH A 44 2044 2044 HOH HOH . 
D 4 HOH A 45 2045 2045 HOH HOH . 
D 4 HOH A 46 2046 2046 HOH HOH . 
D 4 HOH A 47 2047 2047 HOH HOH . 
D 4 HOH A 48 2048 2048 HOH HOH . 
D 4 HOH A 49 2049 2049 HOH HOH . 
D 4 HOH A 50 2050 2050 HOH HOH . 
D 4 HOH A 51 2051 2051 HOH HOH . 
D 4 HOH A 52 2052 2052 HOH HOH . 
D 4 HOH A 53 2053 2053 HOH HOH . 
D 4 HOH A 54 2054 2054 HOH HOH . 
D 4 HOH A 55 2055 2055 HOH HOH . 
D 4 HOH A 56 2056 2056 HOH HOH . 
D 4 HOH A 57 2057 2057 HOH HOH . 
D 4 HOH A 58 2058 2058 HOH HOH . 
D 4 HOH A 59 2059 2059 HOH HOH . 
D 4 HOH A 60 2060 2060 HOH HOH . 
D 4 HOH A 61 2061 2061 HOH HOH . 
D 4 HOH A 62 2062 2062 HOH HOH . 
D 4 HOH A 63 2063 2063 HOH HOH . 
D 4 HOH A 64 2064 2064 HOH HOH . 
D 4 HOH A 65 2065 2065 HOH HOH . 
D 4 HOH A 66 2066 2066 HOH HOH . 
D 4 HOH A 67 2067 2067 HOH HOH . 
D 4 HOH A 68 2068 2068 HOH HOH . 
D 4 HOH A 69 2069 2069 HOH HOH . 
D 4 HOH A 70 2070 2070 HOH HOH . 
D 4 HOH A 71 2071 2071 HOH HOH . 
D 4 HOH A 72 2072 2072 HOH HOH . 
D 4 HOH A 73 2073 2073 HOH HOH . 
D 4 HOH A 74 2074 2074 HOH HOH . 
D 4 HOH A 75 2075 2075 HOH HOH . 
D 4 HOH A 76 2076 2076 HOH HOH . 
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loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GDL . . . B 2 9.57 17.071 31.952 1 39.77 ? C1 GDL 1436 A 1 
HETATM 2 C C2 GDL . . . B 2 9.729 15.731 32.373 1 39.53 ? C2 GDL 1436 A 1 
HETATM 3 C C3 GDL . . . B 2 8.986 14.692 31.479 1 39.59 ? C3 GDL 1436 A 1 
HETATM 4 C C4 GDL . . . B 2 7.765 15.295 30.831 1 38.21 ? C4 GDL 1436 A 1 
HETATM 5 C C5 GDL . . . B 2 8.322 16.379 29.927 1 39.54 ? C5 GDL 1436 A 1 
HETATM 6 C C6 GDL . . . B 2 7.244 17.09 29.096 1 39.94 ? C6 GDL 1436 A 1 
HETATM 7 C C7 GDL . . . B 2 12.027 15.671 31.373 1 39.01 ? C7 GDL 1436 A 1 
HETATM 8 C C8 GDL . . . B 2 13.457 15.186 31.578 1 39.5 ? C8 GDL 1436 A 1 
HETATM 9 N N2 GDL . . . B 2 11.175 15.386 32.392 1 39.12 ? N2 GDL 1436 A 1 
HETATM 10 O O1 GDL . . . B 2 9.987 17.97 32.677 1 40.52 ? O1 GDL 1436 A 1 
HETATM 11 O O3 GDL . . . B 2 8.674 13.494 32.222 1 40.87 ? O3 GDL 1436 A 1 
HETATM 12 O O4 GDL . . . B 2 7.083 14.293 30.034 1 35.61 ? O4 GDL 1436 A 1 
HETATM 13 O O5 GDL . . . B 2 9.025 17.355 30.72 1 39.36 ? O5 GDL 1436 A 1 
HETATM 14 O O6 GDL . . . B 2 6.373 17.876 29.93 1 40.34 ? O6 GDL 1436 A 1 
HETATM 15 O O7 GDL . . . B 2 11.726 16.273 30.338 1 38.58 ? O7 GDL 1436 A 1 
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_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
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