data_2XTV # _model_server_result.job_id jD-NsICu_tMtDXGV7oxvsw _model_server_result.datetime_utc '2024-11-21 23:07:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xtv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 2XTV # _exptl.entry_id 2XTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 677.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XTV _cell.length_a 38.63 _cell.length_b 58.87 _cell.length_c 91.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # _chem_comp.formula 'C36 H72 N O8 P' _chem_comp.formula_weight 677.933 _chem_comp.id MC3 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MC3 sing 218 n n C1 O3P MC3 sing 219 n n C1 H11 MC3 sing 220 n n C1 H12 MC3 sing 221 n n C2 C3 MC3 sing 222 n n C2 O2 MC3 sing 223 n n C2 H2 MC3 sing 224 n n C3 O3 MC3 sing 225 n n C3 H31 MC3 sing 226 n n C3 H32 MC3 sing 227 n n C4 C5 MC3 sing 228 n n C4 O4P MC3 sing 229 n n C4 H41 MC3 sing 230 n n C4 H42 MC3 sing 231 n n C5 N MC3 sing 232 n n C5 H51 MC3 sing 233 n n C5 H52 MC3 sing 234 n n C6 N MC3 sing 235 n n C6 H61 MC3 sing 236 n n C6 H62 MC3 sing 237 n n C6 H63 MC3 sing 238 n n C7 N MC3 sing 239 n n C7 H71 MC3 sing 240 n n C7 H72 MC3 sing 241 n n C7 H73 MC3 sing 242 n n C8 N MC3 sing 243 n n C8 H81 MC3 sing 244 n n C8 H82 MC3 sing 245 n n C8 H83 MC3 sing 246 n n C11 C12 MC3 sing 247 n n C11 O3 MC3 sing 248 n n C11 O11 MC3 doub 249 n n C12 C13 MC3 sing 250 n n C12 H121 MC3 sing 251 n n C12 H122 MC3 sing 252 n n C13 C14 MC3 sing 253 n n C13 H131 MC3 sing 254 n n C13 H132 MC3 sing 255 n n C14 C15 MC3 sing 256 n n C14 H141 MC3 sing 257 n n C14 H142 MC3 sing 258 n n C15 C16 MC3 sing 259 n n C15 H151 MC3 sing 260 n n C15 H152 MC3 sing 261 n n C16 C17 MC3 sing 262 n n C16 H161 MC3 sing 263 n n C16 H162 MC3 sing 264 n n C17 C18 MC3 sing 265 n n C17 H171 MC3 sing 266 n n C17 H172 MC3 sing 267 n n C18 C19 MC3 sing 268 n n C18 H181 MC3 sing 269 n n C18 H182 MC3 sing 270 n n C19 C20 MC3 sing 271 n n C19 H191 MC3 sing 272 n n C19 H192 MC3 sing 273 n n C20 C21 MC3 sing 274 n n C20 H201 MC3 sing 275 n n C20 H202 MC3 sing 276 n n C21 C22 MC3 sing 277 n n C21 H211 MC3 sing 278 n n C21 H212 MC3 sing 279 n n C22 C23 MC3 sing 280 n n C22 H221 MC3 sing 281 n n C22 H222 MC3 sing 282 n n C23 C24 MC3 sing 283 n n C23 H231 MC3 sing 284 n n C23 H232 MC3 sing 285 n n C24 H241 MC3 sing 286 n n C24 H242 MC3 sing 287 n n C24 H243 MC3 sing 288 n n C31 C32 MC3 sing 289 n n C31 O2 MC3 sing 290 n n C31 O31 MC3 doub 291 n n C32 C33 MC3 sing 292 n n C32 H321 MC3 sing 293 n n C32 H322 MC3 sing 294 n n C33 C34 MC3 sing 295 n n C33 H331 MC3 sing 296 n n C33 H332 MC3 sing 297 n n C34 C35 MC3 sing 298 n n C34 H341 MC3 sing 299 n n C34 H342 MC3 sing 300 n n C35 C36 MC3 sing 301 n n C35 H351 MC3 sing 302 n n C35 H352 MC3 sing 303 n n C36 C37 MC3 sing 304 n n C36 H361 MC3 sing 305 n n C36 H362 MC3 sing 306 n n C37 C38 MC3 sing 307 n n C37 H371 MC3 sing 308 n n C37 H372 MC3 sing 309 n n C38 C39 MC3 sing 310 n n C38 H381 MC3 sing 311 n n C38 H382 MC3 sing 312 n n C39 C40 MC3 sing 313 n n C39 H391 MC3 sing 314 n n C39 H392 MC3 sing 315 n n C40 C41 MC3 sing 316 n n C40 H401 MC3 sing 317 n n C40 H402 MC3 sing 318 n n C41 C42 MC3 sing 319 n n C41 H411 MC3 sing 320 n n C41 H412 MC3 sing 321 n n C42 C43 MC3 sing 322 n n C42 H421 MC3 sing 323 n n C42 H422 MC3 sing 324 n n C43 C44 MC3 sing 325 n n C43 H431 MC3 sing 326 n n C43 H432 MC3 sing 327 n n C44 H441 MC3 sing 328 n n C44 H442 MC3 sing 329 n n C44 H443 MC3 sing 330 n n O1P P MC3 doub 331 n n O2P P MC3 sing 332 n n O3P P MC3 sing 333 n n O4P P MC3 sing 334 n n # _atom_sites.entry_id 2XTV _atom_sites.fract_transf_matrix[1][1] 0.025887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MC3 A 1 501 501 MC3 MC3 . C 2 MC3 A 1 502 502 MC3 MC3 . D 2 MC3 A 1 503 503 MC3 MC3 . E 2 MC3 A 1 504 504 MC3 MC3 . F 2 MC3 A 1 505 505 MC3 MC3 . G 2 MC3 A 1 506 506 MC3 MC3 . H 2 MC3 A 1 507 507 MC3 MC3 . I 2 MC3 A 1 508 508 MC3 MC3 . J 2 MC3 A 1 509 509 MC3 MC3 . K 2 MC3 A 1 510 510 MC3 MC3 . L 2 MC3 A 1 511 511 MC3 MC3 . M 2 MC3 A 1 512 512 MC3 MC3 . N 2 MC3 A 1 513 513 MC3 MC3 . O 2 MC3 A 1 514 514 MC3 MC3 . P 3 HOH A 1 2001 2001 HOH HOH . P 3 HOH A 2 2002 2002 HOH HOH . P 3 HOH A 3 2003 2003 HOH HOH . P 3 HOH A 4 2004 2004 HOH HOH . P 3 HOH A 5 2005 2005 HOH HOH . P 3 HOH A 6 2006 2006 HOH HOH . P 3 HOH A 7 2007 2007 HOH HOH . P 3 HOH A 8 2008 2008 HOH HOH . P 3 HOH A 9 2009 2009 HOH HOH . P 3 HOH A 10 2010 2010 HOH HOH . P 3 HOH A 11 2011 2011 HOH HOH . P 3 HOH A 12 2012 2012 HOH HOH . P 3 HOH A 13 2013 2013 HOH HOH . P 3 HOH A 14 2014 2014 HOH HOH . P 3 HOH A 15 2015 2015 HOH HOH . P 3 HOH A 16 2016 2016 HOH HOH . P 3 HOH A 17 2017 2017 HOH HOH . P 3 HOH A 18 2018 2018 HOH HOH . P 3 HOH A 19 2019 2019 HOH HOH . P 3 HOH A 20 2020 2020 HOH HOH . P 3 HOH A 21 2021 2021 HOH HOH . P 3 HOH A 22 2022 2022 HOH HOH . P 3 HOH A 23 2023 2023 HOH HOH . P 3 HOH A 24 2024 2024 HOH HOH . P 3 HOH A 25 2025 2025 HOH HOH . P 3 HOH A 26 2026 2026 HOH HOH . P 3 HOH A 27 2027 2027 HOH HOH . P 3 HOH A 28 2028 2028 HOH HOH . P 3 HOH A 29 2029 2029 HOH HOH . P 3 HOH A 30 2030 2030 HOH HOH . P 3 HOH A 31 2031 2031 HOH HOH . P 3 HOH A 32 2032 2032 HOH HOH . P 3 HOH A 33 2033 2033 HOH HOH . P 3 HOH A 34 2034 2034 HOH HOH . P 3 HOH A 35 2035 2035 HOH HOH . P 3 HOH A 36 2036 2036 HOH HOH . P 3 HOH A 37 2037 2037 HOH HOH . P 3 HOH A 38 2038 2038 HOH HOH . P 3 HOH A 39 2039 2039 HOH HOH . P 3 HOH A 40 2040 2040 HOH HOH . P 3 HOH A 41 2041 2041 HOH HOH . P 3 HOH A 42 2042 2042 HOH HOH . P 3 HOH A 43 2043 2043 HOH HOH . P 3 HOH A 44 2044 2044 HOH HOH . P 3 HOH A 45 2045 2045 HOH HOH . P 3 HOH A 46 2046 2046 HOH HOH . P 3 HOH A 47 2047 2047 HOH HOH . P 3 HOH A 48 2048 2048 HOH HOH . P 3 HOH A 49 2049 2049 HOH HOH . P 3 HOH A 50 2050 2050 HOH HOH . P 3 HOH A 51 2051 2051 HOH HOH . P 3 HOH A 52 2052 2052 HOH HOH . P 3 HOH A 53 2053 2053 HOH HOH . P 3 HOH A 54 2054 2054 HOH HOH . P 3 HOH A 55 2055 2055 HOH HOH . P 3 HOH A 56 2056 2056 HOH HOH . P 3 HOH A 57 2057 2057 HOH HOH . P 3 HOH A 58 2058 2058 HOH HOH . P 3 HOH A 59 2059 2059 HOH HOH . P 3 HOH A 60 2060 2060 HOH HOH . P 3 HOH A 61 2061 2061 HOH HOH . P 3 HOH A 62 2062 2062 HOH HOH . P 3 HOH A 63 2063 2063 HOH HOH . P 3 HOH A 64 2064 2064 HOH HOH . P 3 HOH A 65 2065 2065 HOH HOH . P 3 HOH A 66 2066 2066 HOH HOH . P 3 HOH A 67 2067 2067 HOH HOH . P 3 HOH A 68 2068 2068 HOH HOH . P 3 HOH A 69 2069 2069 HOH HOH . P 3 HOH A 70 2070 2070 HOH HOH . P 3 HOH A 71 2071 2071 HOH HOH . P 3 HOH A 72 2072 2072 HOH HOH . P 3 HOH A 73 2073 2073 HOH HOH . P 3 HOH A 74 2074 2074 HOH HOH . P 3 HOH A 75 2075 2075 HOH HOH . P 3 HOH A 76 2076 2076 HOH HOH . P 3 HOH A 77 2077 2077 HOH HOH . P 3 HOH A 78 2078 2078 HOH HOH . P 3 HOH A 79 2079 2079 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MC3 . . . C 2 -0.704 -8.745 38.094 1 51.82 ? C1 MC3 502 A 1 HETATM 2 C C2 MC3 . . . C 2 -1.67 -7.732 37.496 1 48.03 ? C2 MC3 502 A 1 HETATM 3 C C3 MC3 . . . C 2 -0.949 -6.77 36.559 1 50.42 ? C3 MC3 502 A 1 HETATM 4 C C4 MC3 . . . C 2 -1.297 -11.879 40.566 1 46.56 ? C4 MC3 502 A 1 HETATM 5 C C5 MC3 . . . C 2 -1.621 -12.907 41.649 1 45.43 ? C5 MC3 502 A 1 HETATM 6 C C6 MC3 . . . C 2 -0.898 -14.693 40.257 1 39.14 ? C6 MC3 502 A 1 HETATM 7 C C7 MC3 . . . C 2 0.693 -13.508 41.619 1 41.32 ? C7 MC3 502 A 1 HETATM 8 C C8 MC3 . . . C 2 -0.92 -14.986 42.631 1 44.18 ? C8 MC3 502 A 1 HETATM 9 C C11 MC3 . . . C 2 -0.911 -6.388 34.11 1 45.94 ? C11 MC3 502 A 1 HETATM 10 C C12 MC3 . . . C 2 -0.955 -7.23 32.87 1 34.58 ? C12 MC3 502 A 1 HETATM 11 C C13 MC3 . . . C 2 -0.586 -6.334 31.706 1 33.66 ? C13 MC3 502 A 1 HETATM 12 C C14 MC3 . . . C 2 0.34 -7.104 30.78 1 23.24 ? C14 MC3 502 A 1 HETATM 13 C C15 MC3 . . . C 2 -0.405 -8.245 30.102 1 27.98 ? C15 MC3 502 A 1 HETATM 14 C C16 MC3 . . . C 2 0.529 -8.888 29.09 1 29.13 ? C16 MC3 502 A 1 HETATM 15 C C17 MC3 . . . C 2 -0.091 -10.117 28.442 1 28.49 ? C17 MC3 502 A 1 HETATM 16 C C18 MC3 . . . C 2 0.702 -10.466 27.197 1 26.16 ? C18 MC3 502 A 1 HETATM 17 C C19 MC3 . . . C 2 0.179 -11.737 26.549 1 26.77 ? C19 MC3 502 A 1 HETATM 18 C C20 MC3 . . . C 2 1.007 -12.006 25.306 1 27.53 ? C20 MC3 502 A 1 HETATM 19 C C21 MC3 . . . C 2 0.453 -13.177 24.506 1 29.14 ? C21 MC3 502 A 1 HETATM 20 C C22 MC3 . . . C 2 1.34 -13.404 23.29 1 30.39 ? C22 MC3 502 A 1 HETATM 21 C C23 MC3 . . . C 2 0.696 -14.358 22.291 1 33.09 ? C23 MC3 502 A 1 HETATM 22 C C24 MC3 . . . C 2 -0.352 -13.643 21.45 1 40.06 ? C24 MC3 502 A 1 HETATM 23 C C31 MC3 . . . C 2 -2.232 -9.306 35.758 1 46.71 ? C31 MC3 502 A 1 HETATM 24 C C32 MC3 . . . C 2 -3.203 -10.216 35.053 1 30.36 ? C32 MC3 502 A 1 HETATM 25 C C33 MC3 . . . C 2 -2.425 -11.251 34.251 1 33.49 ? C33 MC3 502 A 1 HETATM 26 C C34 MC3 . . . C 2 -2.72 -11.098 32.768 1 36.72 ? C34 MC3 502 A 1 HETATM 27 C C35 MC3 . . . C 2 -2.569 -12.434 32.048 1 31.67 ? C35 MC3 502 A 1 HETATM 28 C C36 MC3 . . . C 2 -3.092 -12.32 30.624 1 35.31 ? C36 MC3 502 A 1 HETATM 29 C C37 MC3 . . . C 2 -2.693 -13.537 29.803 1 31.75 ? C37 MC3 502 A 1 HETATM 30 C C38 MC3 . . . C 2 -3.358 -13.516 28.429 1 40.81 ? C38 MC3 502 A 1 HETATM 31 C C39 MC3 . . . C 2 -2.74 -14.565 27.506 1 40.17 ? C39 MC3 502 A 1 HETATM 32 C C40 MC3 . . . C 2 -3.666 -14.86 26.331 1 41.33 ? C40 MC3 502 A 1 HETATM 33 C C41 MC3 . . . C 2 -2.899 -15.291 25.083 1 42.97 ? C41 MC3 502 A 1 HETATM 34 C C42 MC3 . . . C 2 -2.255 -16.665 25.238 1 40.59 ? C42 MC3 502 A 1 HETATM 35 C C43 MC3 . . . C 2 -1.736 -17.185 23.898 1 39.26 ? C43 MC3 502 A 1 HETATM 36 C C44 MC3 . . . C 2 -2.502 -18.418 23.426 1 34.05 ? C44 MC3 502 A 1 HETATM 37 N N MC3 . . . C 2 -0.681 -14.026 41.544 1 42.3 ? N MC3 502 A 1 HETATM 38 O O2 MC3 . . . C 2 -2.712 -8.434 36.817 1 54.29 ? O2 MC3 502 A 1 HETATM 39 O O3 MC3 . . . C 2 -1.605 -6.83 35.297 1 45.01 ? O3 MC3 502 A 1 HETATM 40 O O11 MC3 . . . C 2 -0.299 -5.334 34.126 1 52.8 ? O11 MC3 502 A 1 HETATM 41 O O31 MC3 . . . C 2 -1.053 -9.3 35.44 1 44.88 ? O31 MC3 502 A 1 HETATM 42 O O1P MC3 . . . C 2 -2.013 -8.601 41.405 1 63.58 ? O1P MC3 502 A 1 HETATM 43 O O2P MC3 . . . C 2 0.451 -8.574 40.544 1 51.45 ? O2P MC3 502 A 1 HETATM 44 O O3P MC3 . . . C 2 -1.411 -9.452 39.107 1 55.15 ? O3P MC3 502 A 1 HETATM 45 O O4P MC3 . . . C 2 -0.711 -10.741 41.197 1 57.1 ? O4P MC3 502 A 1 HETATM 46 P P MC3 . . . C 2 -0.899 -9.25 40.613 1 57.32 ? P MC3 502 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #