data_2XU5 # _model_server_result.job_id AfgLGbUEhxrXaZFoVfHuQA _model_server_result.datetime_utc '2024-12-02 16:47:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xu5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1221}' # _entry.id 2XU5 # _exptl.entry_id 2XU5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.036 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,4R)-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]-1-[1-(4-methylphenyl)cyclopropyl]carbonyl-pyrrolidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XU5 _cell.length_a 36.943 _cell.length_b 59.107 _cell.length_c 89.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XU5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 156 A CYS 156 1_555 A SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C5 XU5 . A XU5 1221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? # _chem_comp.formula 'C26 H28 Cl N3 O4 S' _chem_comp.formula_weight 514.036 _chem_comp.id XU5 _chem_comp.mon_nstd_flag . _chem_comp.name (2S,4R)-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]-1-[1-(4-methylphenyl)cyclopropyl]carbonyl-pyrrolidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C16 XU5 sing 406 n n C1 C2 XU5 sing 407 n n C1 N10 XU5 sing 408 n n C1 C13 XU5 sing 409 n n C2 N3 XU5 sing 410 n n C2 O6 XU5 doub 411 n n N3 C4 XU5 sing 412 n n C4 C5 XU5 sing 413 n n C4 C7 XU5 sing 414 n n C4 C8 XU5 sing 415 n n C5 N9 XU5 doub 416 n n C7 C8 XU5 sing 417 n n N10 C11 XU5 sing 418 n n N10 C24 XU5 sing 419 n n C11 C12 XU5 sing 420 n n C12 C13 XU5 sing 421 n n C12 S14 XU5 sing 422 n n S14 C15 XU5 sing 423 n n S14 O22 XU5 doub 424 n n S14 O23 XU5 doub 425 n n C15 C16 XU5 doub 426 n y C15 C20 XU5 sing 427 n y C16 C17 XU5 sing 428 n y C17 C18 XU5 doub 429 n y C18 C19 XU5 sing 430 n y C19 C20 XU5 doub 431 n y C24 O25 XU5 doub 432 n n C24 C27 XU5 sing 433 n n C26 C27 XU5 sing 434 n n C26 C28 XU5 sing 435 n n C27 C28 XU5 sing 436 n n C27 C33 XU5 sing 437 n n C29 C30 XU5 doub 438 n y C29 C34 XU5 sing 439 n y C30 C31 XU5 sing 440 n y C30 C35 XU5 sing 441 n n C31 C32 XU5 doub 442 n y C32 C33 XU5 sing 443 n y C33 C34 XU5 doub 444 n y C1 H1 XU5 sing 445 n n N3 HN3 XU5 sing 446 n n C5 H5 XU5 sing 447 n n C7 H7 XU5 sing 448 n n C7 H7A XU5 sing 449 n n C8 H8 XU5 sing 450 n n C8 H8A XU5 sing 451 n n N9 HN9 XU5 sing 452 n n C11 H11 XU5 sing 453 n n C11 H11A XU5 sing 454 n n C12 H12 XU5 sing 455 n n C13 H13 XU5 sing 456 n n C13 H13A XU5 sing 457 n n C17 H17 XU5 sing 458 n n C18 H18 XU5 sing 459 n n C19 H19 XU5 sing 460 n n C20 H20 XU5 sing 461 n n C26 H26 XU5 sing 462 n n C26 H26A XU5 sing 463 n n C28 H28 XU5 sing 464 n n C28 H28A XU5 sing 465 n n C29 H29 XU5 sing 466 n n C31 H31 XU5 sing 467 n n C32 H32 XU5 sing 468 n n C34 H34 XU5 sing 469 n n C35 H35 XU5 sing 470 n n C35 H35A XU5 sing 471 n n C35 H35B XU5 sing 472 n n # _atom_sites.entry_id 2XU5 _atom_sites.fract_transf_matrix[1][1] 0.027069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016918 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XU5 A 1 1221 1221 XU5 XU5 . C 3 GOL A 1 1222 1222 GOL GOL . D 4 FLC A 1 1223 1223 FLC FLC . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . E 5 HOH A 121 2121 2121 HOH HOH . E 5 HOH A 122 2122 2122 HOH HOH . E 5 HOH A 123 2123 2123 HOH HOH . E 5 HOH A 124 2124 2124 HOH HOH . E 5 HOH A 125 2125 2125 HOH HOH . E 5 HOH A 126 2126 2126 HOH HOH . E 5 HOH A 127 2127 2127 HOH HOH . E 5 HOH A 128 2128 2128 HOH HOH . E 5 HOH A 129 2129 2129 HOH HOH . E 5 HOH A 130 2130 2130 HOH HOH . E 5 HOH A 131 2131 2131 HOH HOH . E 5 HOH A 132 2132 2132 HOH HOH . E 5 HOH A 133 2133 2133 HOH HOH . E 5 HOH A 134 2134 2134 HOH HOH . E 5 HOH A 135 2135 2135 HOH HOH . E 5 HOH A 136 2136 2136 HOH HOH . E 5 HOH A 137 2137 2137 HOH HOH . E 5 HOH A 138 2138 2138 HOH HOH . E 5 HOH A 139 2139 2139 HOH HOH . E 5 HOH A 140 2140 2140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL XU5 . . . B 2 17.516 10.374 22.27 1 39.83 ? CL XU5 1221 A 1 HETATM 2 C C1 XU5 . . . B 2 23.164 11.301 22.618 1 21.74 ? C1 XU5 1221 A 1 HETATM 3 C C2 XU5 . . . B 2 24.212 11.879 23.549 1 24.49 ? C2 XU5 1221 A 1 HETATM 4 N N3 XU5 . . . B 2 25.237 12.543 22.966 1 23.86 ? N3 XU5 1221 A 1 HETATM 5 C C4 XU5 . . . B 2 26.295 13.28 23.653 1 25.73 ? C4 XU5 1221 A 1 HETATM 6 C C5 XU5 . . . B 2 25.9 14.686 23.902 1 24.3 ? C5 XU5 1221 A 1 HETATM 7 O O6 XU5 . . . B 2 24.107 11.747 24.759 1 22.66 ? O6 XU5 1221 A 1 HETATM 8 C C7 XU5 . . . B 2 27.237 12.59 24.651 1 27.01 ? C7 XU5 1221 A 1 HETATM 9 C C8 XU5 . . . B 2 27.741 12.972 23.258 1 26.88 ? C8 XU5 1221 A 1 HETATM 10 N N9 XU5 . . . B 2 26.772 15.541 24.252 1 29.77 ? N9 XU5 1221 A 1 HETATM 11 N N10 XU5 . . . B 2 23.169 9.843 22.685 1 21.97 ? N10 XU5 1221 A 1 HETATM 12 C C11 XU5 . . . B 2 21.849 9.359 23.099 1 21.91 ? C11 XU5 1221 A 1 HETATM 13 C C12 XU5 . . . B 2 20.903 10.578 22.837 1 19.42 ? C12 XU5 1221 A 1 HETATM 14 C C13 XU5 . . . B 2 21.829 11.763 23.247 1 19.45 ? C13 XU5 1221 A 1 HETATM 15 S S14 XU5 . . . B 2 20.413 10.821 21.111 1 21.35 ? S14 XU5 1221 A 1 HETATM 16 C C15 XU5 . . . B 2 19.477 9.347 20.756 1 21.97 ? C15 XU5 1221 A 1 HETATM 17 C C16 XU5 . . . B 2 18.213 9.153 21.286 1 25.14 ? C16 XU5 1221 A 1 HETATM 18 C C17 XU5 . . . B 2 17.452 8.011 21.054 1 23.6 ? C17 XU5 1221 A 1 HETATM 19 C C18 XU5 . . . B 2 17.984 7.037 20.241 1 23.22 ? C18 XU5 1221 A 1 HETATM 20 C C19 XU5 . . . B 2 19.241 7.217 19.712 1 25.04 ? C19 XU5 1221 A 1 HETATM 21 C C20 XU5 . . . B 2 19.999 8.352 19.958 1 23.13 ? C20 XU5 1221 A 1 HETATM 22 O O22 XU5 . . . B 2 19.565 11.989 21.064 1 20.35 ? O22 XU5 1221 A 1 HETATM 23 O O23 XU5 . . . B 2 21.548 10.746 20.259 1 20.08 ? O23 XU5 1221 A 1 HETATM 24 C C24 XU5 . . . B 2 24.219 9.069 22.354 1 22.49 ? C24 XU5 1221 A 1 HETATM 25 O O25 XU5 . . . B 2 25.222 9.623 21.974 1 23.89 ? O25 XU5 1221 A 1 HETATM 26 C C26 XU5 . . . B 2 23.57 6.779 21.267 1 26.12 ? C26 XU5 1221 A 1 HETATM 27 C C27 XU5 . . . B 2 24.12 7.566 22.455 1 24.87 ? C27 XU5 1221 A 1 HETATM 28 C C28 XU5 . . . B 2 25.07 6.777 21.572 1 25.66 ? C28 XU5 1221 A 1 HETATM 29 C C29 XU5 . . . B 2 22.354 5.856 25.391 1 24.88 ? C29 XU5 1221 A 1 HETATM 30 C C30 XU5 . . . B 2 23.216 6.198 26.431 1 24.47 ? C30 XU5 1221 A 1 HETATM 31 C C31 XU5 . . . B 2 24.329 6.972 26.159 1 21.94 ? C31 XU5 1221 A 1 HETATM 32 C C32 XU5 . . . B 2 24.617 7.392 24.875 1 23.88 ? C32 XU5 1221 A 1 HETATM 33 C C33 XU5 . . . B 2 23.78 7.059 23.836 1 23.5 ? C33 XU5 1221 A 1 HETATM 34 C C34 XU5 . . . B 2 22.632 6.289 24.09 1 22.82 ? C34 XU5 1221 A 1 HETATM 35 C C35 XU5 . . . B 2 22.955 5.745 27.854 1 27.51 ? C35 XU5 1221 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #