data_2XUK # _model_server_result.job_id U-AOkCYdJK2ZQFqy1F2GhQ _model_server_result.datetime_utc '2024-11-23 21:22:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xuk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1543}' # _entry.id 2XUK # _exptl.entry_id 2XUK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 661.86 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,8-DIAMINO-6-PHENYL-5-[6-[1-[2-[(1,2,3,4-TETRAHYDRO-9-ACRIDINYL)AMINO]ETHYL]-1H-1,2,3-TRIAZOL-5-YL]HEXYL]-PHENANTHRIDINIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XUK _cell.length_a 78.924 _cell.length_b 110.106 _cell.length_c 227.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XUK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C42 H45 N8 1' _chem_comp.formula_weight 661.86 _chem_comp.id TZ5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,8-DIAMINO-6-PHENYL-5-[6-[1-[2-[(1,2,3,4-TETRAHYDRO-9-ACRIDINYL)AMINO]ETHYL]-1H-1,2,3-TRIAZOL-5-YL]HEXYL]-PHENANTHRIDINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C8 TZ5 sing 358 n n N2 HN21 TZ5 sing 359 n n N2 HN22 TZ5 sing 360 n n C8 C7 TZ5 doub 361 n y C8 C19 TZ5 sing 362 n y C7 C6 TZ5 sing 363 n y C7 H7 TZ5 sing 364 n n C6 C5 TZ5 doub 365 n y C6 H6 TZ5 sing 366 n n C5 C18 TZ5 sing 367 n y C5 C4 TZ5 sing 368 n y C19 C18 TZ5 doub 369 n y C19 H19 TZ5 sing 370 n n C18 N3 TZ5 sing 371 n y N3 C11 TZ5 doub 372 n y N3 C20 TZ5 sing 373 n n C11 C12 TZ5 sing 374 n y C11 C10 TZ5 sing 375 n y C12 C13 TZ5 doub 376 n y C12 C17 TZ5 sing 377 n y C13 C14 TZ5 sing 378 n y C13 H13 TZ5 sing 379 n n C14 C15 TZ5 doub 380 n y C14 H14 TZ5 sing 381 n n C15 C16 TZ5 sing 382 n y C15 H15 TZ5 sing 383 n n C16 C17 TZ5 doub 384 n y C16 H16 TZ5 sing 385 n n C17 H17 TZ5 sing 386 n n C10 C9 TZ5 doub 387 n y C10 C4 TZ5 sing 388 n y C9 C1 TZ5 sing 389 n y C9 H9 TZ5 sing 390 n n C4 C3 TZ5 doub 391 n y C3 C2 TZ5 sing 392 n y C3 H3 TZ5 sing 393 n n C2 C1 TZ5 doub 394 n y C2 H2 TZ5 sing 395 n n C1 N1 TZ5 sing 396 n n N1 HN11 TZ5 sing 397 n n N1 HN12 TZ5 sing 398 n n C20 C21 TZ5 sing 399 n n C20 H201 TZ5 sing 400 n n C20 H202 TZ5 sing 401 n n C21 C22 TZ5 sing 402 n n C21 H211 TZ5 sing 403 n n C21 H212 TZ5 sing 404 n n C22 C23 TZ5 sing 405 n n C22 H221 TZ5 sing 406 n n C22 H222 TZ5 sing 407 n n C23 C24 TZ5 sing 408 n n C23 H231 TZ5 sing 409 n n C23 H232 TZ5 sing 410 n n C24 C25 TZ5 sing 411 n n C24 H241 TZ5 sing 412 n n C24 H242 TZ5 sing 413 n n C25 C26 TZ5 sing 414 n n C25 H251 TZ5 sing 415 n n C25 H252 TZ5 sing 416 n n C26 N4 TZ5 sing 417 n y C26 C27 TZ5 doub 418 n y N4 N5 TZ5 sing 419 n y N4 C28 TZ5 sing 420 n n N5 N6 TZ5 doub 421 n y N6 C27 TZ5 sing 422 n y C27 H27 TZ5 sing 423 n n C28 C29 TZ5 sing 424 n n C28 H281 TZ5 sing 425 n n C28 H282 TZ5 sing 426 n n C29 N7 TZ5 sing 427 n n C29 H291 TZ5 sing 428 n n C29 H292 TZ5 sing 429 n n N7 C30 TZ5 sing 430 n n N7 HN7 TZ5 sing 431 n n C30 C31 TZ5 doub 432 n y C30 C39 TZ5 sing 433 n y C31 C32 TZ5 sing 434 n y C31 C33 TZ5 sing 435 n y C32 C36 TZ5 doub 436 n y C32 H32 TZ5 sing 437 n n C33 C34 TZ5 sing 438 n y C33 N8 TZ5 doub 439 n y C34 C35 TZ5 doub 440 n y C34 H34 TZ5 sing 441 n n C35 C36 TZ5 sing 442 n y C35 H35 TZ5 sing 443 n n C36 H36 TZ5 sing 444 n n N8 C37 TZ5 sing 445 n y C37 C38 TZ5 sing 446 n n C37 C39 TZ5 doub 447 n y C38 C42 TZ5 sing 448 n n C38 H381 TZ5 sing 449 n n C38 H382 TZ5 sing 450 n n C39 C40 TZ5 sing 451 n n C40 C41 TZ5 sing 452 n n C40 H401 TZ5 sing 453 n n C40 H402 TZ5 sing 454 n n C41 C42 TZ5 sing 455 n n C41 H411 TZ5 sing 456 n n C41 H412 TZ5 sing 457 n n C42 H421 TZ5 sing 458 n n C42 H422 TZ5 sing 459 n n # _atom_sites.entry_id 2XUK _atom_sites.fract_transf_matrix[1][1] 0.01267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TZ5 A 1 1543 1543 TZ5 TZ5 . D 2 TZ5 B 1 1543 1543 TZ5 TZ5 . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . E 3 HOH A 34 2034 2034 HOH HOH . E 3 HOH A 35 2035 2035 HOH HOH . E 3 HOH A 36 2036 2036 HOH HOH . E 3 HOH A 37 2037 2037 HOH HOH . E 3 HOH A 38 2038 2038 HOH HOH . E 3 HOH A 39 2039 2039 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 TZ5 . . . C 2 38.508 20.729 12.001 1 75.16 ? N2 TZ5 1543 A 1 HETATM 2 C C8 TZ5 . . . C 2 38.515 21.994 11.469 1 74.52 ? C8 TZ5 1543 A 1 HETATM 3 C C7 TZ5 . . . C 2 39.594 22.863 11.782 1 75.22 ? C7 TZ5 1543 A 1 HETATM 4 C C6 TZ5 . . . C 2 39.617 24.135 11.258 1 75.57 ? C6 TZ5 1543 A 1 HETATM 5 C C5 TZ5 . . . C 2 38.58 24.628 10.387 1 75.09 ? C5 TZ5 1543 A 1 HETATM 6 C C19 TZ5 . . . C 2 37.481 22.432 10.624 1 73.73 ? C19 TZ5 1543 A 1 HETATM 7 C C18 TZ5 . . . C 2 37.482 23.745 10.056 1 73.73 ? C18 TZ5 1543 A 1 HETATM 8 N N3 TZ5 . . . C 2 36.492 24.228 9.147 1 71.12 ? N3 TZ5 1543 A 1 HETATM 9 C C11 TZ5 . . . C 2 36.551 25.477 8.57 1 73.68 ? C11 TZ5 1543 A 1 HETATM 10 C C12 TZ5 . . . C 2 35.509 26.001 7.612 1 74.5 ? C12 TZ5 1543 A 1 HETATM 11 C C13 TZ5 . . . C 2 34.587 26.956 8.093 1 73.9 ? C13 TZ5 1543 A 1 HETATM 12 C C14 TZ5 . . . C 2 33.627 27.474 7.22 1 73.97 ? C14 TZ5 1543 A 1 HETATM 13 C C15 TZ5 . . . C 2 33.591 27.041 5.887 1 74.42 ? C15 TZ5 1543 A 1 HETATM 14 C C16 TZ5 . . . C 2 34.5 26.087 5.4 1 74.63 ? C16 TZ5 1543 A 1 HETATM 15 C C17 TZ5 . . . C 2 35.471 25.57 6.267 1 74.79 ? C17 TZ5 1543 A 1 HETATM 16 C C10 TZ5 . . . C 2 37.644 26.367 8.883 1 75.9 ? C10 TZ5 1543 A 1 HETATM 17 C C9 TZ5 . . . C 2 37.82 27.646 8.199 1 77.42 ? C9 TZ5 1543 A 1 HETATM 18 C C4 TZ5 . . . C 2 38.664 25.959 9.817 1 75.87 ? C4 TZ5 1543 A 1 HETATM 19 C C3 TZ5 . . . C 2 39.772 26.864 10.051 1 77.25 ? C3 TZ5 1543 A 1 HETATM 20 C C2 TZ5 . . . C 2 39.905 28.083 9.397 1 78.83 ? C2 TZ5 1543 A 1 HETATM 21 C C1 TZ5 . . . C 2 38.904 28.487 8.445 1 78.85 ? C1 TZ5 1543 A 1 HETATM 22 N N1 TZ5 . . . C 2 39.007 29.695 7.781 1 79.2 ? N1 TZ5 1543 A 1 HETATM 23 C C20 TZ5 . . . C 2 35.369 23.298 8.776 1 64.38 ? C20 TZ5 1543 A 1 HETATM 24 C C21 TZ5 . . . C 2 33.999 23.335 9.437 1 58.58 ? C21 TZ5 1543 A 1 HETATM 25 C C22 TZ5 . . . C 2 33.003 22.338 8.81 1 52.46 ? C22 TZ5 1543 A 1 HETATM 26 C C23 TZ5 . . . C 2 31.881 22.01 9.804 1 48.79 ? C23 TZ5 1543 A 1 HETATM 27 C C24 TZ5 . . . C 2 30.642 21.335 9.204 1 47.13 ? C24 TZ5 1543 A 1 HETATM 28 C C25 TZ5 . . . C 2 29.423 21.306 10.154 1 45.9 ? C25 TZ5 1543 A 1 HETATM 29 C C26 TZ5 . . . C 2 29.561 20.353 11.304 1 45.65 ? C26 TZ5 1543 A 1 HETATM 30 N N4 TZ5 . . . C 2 30.022 20.451 12.58 1 44.94 ? N4 TZ5 1543 A 1 HETATM 31 N N5 TZ5 . . . C 2 29.948 19.279 13.19 1 45.38 ? N5 TZ5 1543 A 1 HETATM 32 N N6 TZ5 . . . C 2 29.457 18.355 12.396 1 46.03 ? N6 TZ5 1543 A 1 HETATM 33 C C27 TZ5 . . . C 2 29.225 19.004 11.256 1 45.81 ? C27 TZ5 1543 A 1 HETATM 34 C C28 TZ5 . . . C 2 30.518 21.703 13.184 1 43.3 ? C28 TZ5 1543 A 1 HETATM 35 C C29 TZ5 . . . C 2 29.417 22.565 13.827 1 41.2 ? C29 TZ5 1543 A 1 HETATM 36 N N7 TZ5 . . . C 2 28.576 21.791 14.783 1 38.41 ? N7 TZ5 1543 A 1 HETATM 37 C C30 TZ5 . . . C 2 27.311 21.35 14.385 1 36.1 ? C30 TZ5 1543 A 1 HETATM 38 C C31 TZ5 . . . C 2 26.418 22.006 13.489 1 34.68 ? C31 TZ5 1543 A 1 HETATM 39 C C32 TZ5 . . . C 2 26.615 23.359 13.017 1 34.06 ? C32 TZ5 1543 A 1 HETATM 40 C C33 TZ5 . . . C 2 25.162 21.384 13.17 1 33.6 ? C33 TZ5 1543 A 1 HETATM 41 C C34 TZ5 . . . C 2 24.168 22.087 12.412 1 33.58 ? C34 TZ5 1543 A 1 HETATM 42 C C35 TZ5 . . . C 2 24.413 23.366 11.974 1 34.26 ? C35 TZ5 1543 A 1 HETATM 43 C C36 TZ5 . . . C 2 25.657 24.015 12.276 1 34.52 ? C36 TZ5 1543 A 1 HETATM 44 N N8 TZ5 . . . C 2 24.78 20.204 13.69 1 33.57 ? N8 TZ5 1543 A 1 HETATM 45 C C37 TZ5 . . . C 2 25.61 19.573 14.554 1 34.67 ? C37 TZ5 1543 A 1 HETATM 46 C C38 TZ5 . . . C 2 25.212 18.273 15.033 1 33.67 ? C38 TZ5 1543 A 1 HETATM 47 C C39 TZ5 . . . C 2 26.893 20.104 14.941 1 35.9 ? C39 TZ5 1543 A 1 HETATM 48 C C40 TZ5 . . . C 2 27.714 19.286 15.826 1 35.8 ? C40 TZ5 1543 A 1 HETATM 49 C C41 TZ5 . . . C 2 27.274 18.05 16.252 1 33.97 ? C41 TZ5 1543 A 1 HETATM 50 C C42 TZ5 . . . C 2 26.17 17.45 15.569 1 32.99 ? C42 TZ5 1543 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #