data_2XUQ # _model_server_result.job_id eBXgcYNHisPxTMTgLtJNdA _model_server_result.datetime_utc '2024-10-14 18:31:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xuq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1542}' # _entry.id 2XUQ # _exptl.entry_id 2XUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 661.86 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,8-DIAMINO-6-PHENYL-5-[6-[1-[2-[(1,2,3,4-TETRAHYDRO-9-ACRIDINYL)AMINO]ETHYL]-1H-1,2,3-TRIAZOL-4-YL]HEXYL]-PHENANTHRIDINIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XUQ _cell.length_a 78.6 _cell.length_b 109.7 _cell.length_c 227.939 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C42 H45 N8 1' _chem_comp.formula_weight 661.86 _chem_comp.id TZ4 _chem_comp.mon_nstd_flag . _chem_comp.name 3,8-DIAMINO-6-PHENYL-5-[6-[1-[2-[(1,2,3,4-TETRAHYDRO-9-ACRIDINYL)AMINO]ETHYL]-1H-1,2,3-TRIAZOL-4-YL]HEXYL]-PHENANTHRIDINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C19 TZ4 sing 402 n n N3 HN31 TZ4 sing 403 n n N3 HN32 TZ4 sing 404 n n C19 C18 TZ4 doub 405 n y C19 C15 TZ4 sing 406 n y C18 C17 TZ4 sing 407 n y C18 H18 TZ4 sing 408 n n C17 C16 TZ4 doub 409 n y C17 H17 TZ4 sing 410 n n C16 C14 TZ4 sing 411 n y C16 C4 TZ4 sing 412 n y C14 C15 TZ4 doub 413 n y C14 C7 TZ4 sing 414 n y C15 H15 TZ4 sing 415 n n C7 C8 TZ4 sing 416 n y C7 N2 TZ4 doub 417 n y C8 C9 TZ4 doub 418 n y C8 C13 TZ4 sing 419 n y C9 C10 TZ4 sing 420 n y C9 H9 TZ4 sing 421 n n C10 C11 TZ4 doub 422 n y C10 H10 TZ4 sing 423 n n C11 C12 TZ4 sing 424 n y C11 H11 TZ4 sing 425 n n C12 C13 TZ4 doub 426 n y C12 H12 TZ4 sing 427 n n C13 H13 TZ4 sing 428 n n C4 C3 TZ4 doub 429 n y C4 C6 TZ4 sing 430 n y C3 C2 TZ4 sing 431 n y C3 H3 TZ4 sing 432 n n C2 C1 TZ4 doub 433 n y C2 H2 TZ4 sing 434 n n C1 N1 TZ4 sing 435 n n C1 C5 TZ4 sing 436 n y N1 HN11 TZ4 sing 437 n n N1 HN12 TZ4 sing 438 n n C6 C5 TZ4 doub 439 n y C6 N2 TZ4 sing 440 n y C5 H5 TZ4 sing 441 n n N2 C20 TZ4 sing 442 n n C20 C21 TZ4 sing 443 n n C20 H201 TZ4 sing 444 n n C20 H202 TZ4 sing 445 n n C21 C22 TZ4 sing 446 n n C21 H211 TZ4 sing 447 n n C21 H212 TZ4 sing 448 n n C22 C23 TZ4 sing 449 n n C22 H221 TZ4 sing 450 n n C22 H222 TZ4 sing 451 n n C23 C24 TZ4 sing 452 n n C23 H231 TZ4 sing 453 n n C23 H232 TZ4 sing 454 n n C24 C25 TZ4 sing 455 n n C24 H241 TZ4 sing 456 n n C24 H242 TZ4 sing 457 n n C25 C26 TZ4 sing 458 n n C25 H251 TZ4 sing 459 n n C25 H252 TZ4 sing 460 n n C26 N4 TZ4 sing 461 n y C26 C27 TZ4 doub 462 n y N4 N5 TZ4 doub 463 n y N5 N6 TZ4 sing 464 n y N6 C27 TZ4 sing 465 n y N6 C28 TZ4 sing 466 n n C27 H27 TZ4 sing 467 n n C28 C29 TZ4 sing 468 n n C28 H281 TZ4 sing 469 n n C28 H282 TZ4 sing 470 n n C29 N7 TZ4 sing 471 n n C29 H291 TZ4 sing 472 n n C29 H292 TZ4 sing 473 n n N7 C30 TZ4 sing 474 n n N7 HN7 TZ4 sing 475 n n C30 C31 TZ4 doub 476 n y C30 C39 TZ4 sing 477 n y C31 C32 TZ4 sing 478 n y C31 C33 TZ4 sing 479 n y C32 C36 TZ4 doub 480 n y C32 H32 TZ4 sing 481 n n C33 C34 TZ4 sing 482 n y C33 N8 TZ4 doub 483 n y C34 C35 TZ4 doub 484 n y C34 H34 TZ4 sing 485 n n C35 C36 TZ4 sing 486 n y C35 H35 TZ4 sing 487 n n C36 H36 TZ4 sing 488 n n N8 C37 TZ4 sing 489 n y C37 C38 TZ4 sing 490 n n C37 C39 TZ4 doub 491 n y C38 C42 TZ4 sing 492 n n C38 H381 TZ4 sing 493 n n C38 H382 TZ4 sing 494 n n C39 C40 TZ4 sing 495 n n C40 C41 TZ4 sing 496 n n C40 H401 TZ4 sing 497 n n C40 H402 TZ4 sing 498 n n C41 C42 TZ4 sing 499 n n C41 H411 TZ4 sing 500 n n C41 H412 TZ4 sing 501 n n C42 H421 TZ4 sing 502 n n C42 H422 TZ4 sing 503 n n # _atom_sites.entry_id 2XUQ _atom_sites.fract_transf_matrix[1][1] 0.012723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P6G A 1 1542 1542 P6G P6G . D 3 TZ4 A 1 1543 1543 TZ4 TZ4 . E 3 TZ4 B 1 1542 1542 TZ4 TZ4 . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . F 4 HOH A 24 2024 2024 HOH HOH . F 4 HOH A 25 2025 2025 HOH HOH . F 4 HOH A 26 2026 2026 HOH HOH . F 4 HOH A 27 2027 2027 HOH HOH . F 4 HOH A 28 2028 2028 HOH HOH . F 4 HOH A 29 2029 2029 HOH HOH . F 4 HOH A 30 2030 2030 HOH HOH . F 4 HOH A 31 2031 2031 HOH HOH . F 4 HOH A 32 2032 2032 HOH HOH . F 4 HOH A 33 2033 2033 HOH HOH . F 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH B 1 2001 2001 HOH HOH . G 4 HOH B 2 2002 2002 HOH HOH . G 4 HOH B 3 2003 2003 HOH HOH . G 4 HOH B 4 2004 2004 HOH HOH . G 4 HOH B 5 2005 2005 HOH HOH . G 4 HOH B 6 2006 2006 HOH HOH . G 4 HOH B 7 2007 2007 HOH HOH . G 4 HOH B 8 2008 2008 HOH HOH . G 4 HOH B 9 2009 2009 HOH HOH . G 4 HOH B 10 2010 2010 HOH HOH . G 4 HOH B 11 2011 2011 HOH HOH . G 4 HOH B 12 2012 2012 HOH HOH . G 4 HOH B 13 2013 2013 HOH HOH . G 4 HOH B 14 2014 2014 HOH HOH . G 4 HOH B 15 2015 2015 HOH HOH . G 4 HOH B 16 2016 2016 HOH HOH . G 4 HOH B 17 2017 2017 HOH HOH . G 4 HOH B 18 2018 2018 HOH HOH . G 4 HOH B 19 2019 2019 HOH HOH . G 4 HOH B 20 2020 2020 HOH HOH . G 4 HOH B 21 2021 2021 HOH HOH . G 4 HOH B 22 2022 2022 HOH HOH . G 4 HOH B 23 2023 2023 HOH HOH . G 4 HOH B 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 TZ4 . . . E 3 14.91 -17.515 -39.144 1 102.8 ? N3 TZ4 1542 B 1 HETATM 2 C C19 TZ4 . . . E 3 14.956 -16.197 -39.582 1 103.29 ? C19 TZ4 1542 B 1 HETATM 3 C C18 TZ4 . . . E 3 15.432 -15.876 -40.895 1 103.07 ? C18 TZ4 1542 B 1 HETATM 4 C C17 TZ4 . . . E 3 15.468 -14.553 -41.31 1 102.66 ? C17 TZ4 1542 B 1 HETATM 5 C C16 TZ4 . . . E 3 15.045 -13.434 -40.491 1 101.76 ? C16 TZ4 1542 B 1 HETATM 6 C C14 TZ4 . . . E 3 14.566 -13.763 -39.165 1 101.41 ? C14 TZ4 1542 B 1 HETATM 7 C C15 TZ4 . . . E 3 14.543 -15.154 -38.753 1 102.66 ? C15 TZ4 1542 B 1 HETATM 8 C C7 TZ4 . . . E 3 13.937 -12.759 -38.362 1 100.13 ? C7 TZ4 1542 B 1 HETATM 9 C C8 TZ4 . . . E 3 13.446 -13.13 -36.967 1 99.78 ? C8 TZ4 1542 B 1 HETATM 10 C C9 TZ4 . . . E 3 12.123 -13.593 -36.786 1 99.58 ? C9 TZ4 1542 B 1 HETATM 11 C C10 TZ4 . . . E 3 11.67 -13.946 -35.507 1 99.55 ? C10 TZ4 1542 B 1 HETATM 12 C C11 TZ4 . . . E 3 12.537 -13.836 -34.404 1 99.74 ? C11 TZ4 1542 B 1 HETATM 13 C C12 TZ4 . . . E 3 13.855 -13.375 -34.572 1 99.24 ? C12 TZ4 1542 B 1 HETATM 14 C C13 TZ4 . . . E 3 14.307 -13.025 -35.849 1 99.36 ? C13 TZ4 1542 B 1 HETATM 15 C C4 TZ4 . . . E 3 14.903 -12.078 -41.028 1 100.93 ? C4 TZ4 1542 B 1 HETATM 16 C C3 TZ4 . . . E 3 15.858 -11.609 -42.009 1 100.27 ? C3 TZ4 1542 B 1 HETATM 17 C C2 TZ4 . . . E 3 16.263 -10.296 -42.146 1 99.67 ? C2 TZ4 1542 B 1 HETATM 18 C C1 TZ4 . . . E 3 15.697 -9.309 -41.302 1 99.76 ? C1 TZ4 1542 B 1 HETATM 19 N N1 TZ4 . . . E 3 16.072 -7.986 -41.408 1 99.21 ? N1 TZ4 1542 B 1 HETATM 20 C C6 TZ4 . . . E 3 14.292 -11.073 -40.18 1 100.21 ? C6 TZ4 1542 B 1 HETATM 21 C C5 TZ4 . . . E 3 14.743 -9.716 -40.366 1 100.21 ? C5 TZ4 1542 B 1 HETATM 22 N N2 TZ4 . . . E 3 13.825 -11.492 -38.892 1 99.22 ? N2 TZ4 1542 B 1 HETATM 23 C C20 TZ4 . . . E 3 13.151 -10.452 -38.043 1 95.92 ? C20 TZ4 1542 B 1 HETATM 24 C C21 TZ4 . . . E 3 13.977 -9.351 -37.367 1 92.19 ? C21 TZ4 1542 B 1 HETATM 25 C C22 TZ4 . . . E 3 13.215 -8.03 -37.537 1 87.96 ? C22 TZ4 1542 B 1 HETATM 26 C C23 TZ4 . . . E 3 12.381 -7.722 -36.297 1 84.57 ? C23 TZ4 1542 B 1 HETATM 27 C C24 TZ4 . . . E 3 11.464 -6.512 -36.429 1 81.16 ? C24 TZ4 1542 B 1 HETATM 28 C C25 TZ4 . . . E 3 9.989 -6.903 -36.479 1 79.04 ? C25 TZ4 1542 B 1 HETATM 29 C C26 TZ4 . . . E 3 9.154 -5.685 -36.24 1 78.25 ? C26 TZ4 1542 B 1 HETATM 30 N N4 TZ4 . . . E 3 9.149 -4.654 -37.104 1 77.55 ? N4 TZ4 1542 B 1 HETATM 31 N N5 TZ4 . . . E 3 8.314 -3.795 -36.557 1 77.16 ? N5 TZ4 1542 B 1 HETATM 32 N N6 TZ4 . . . E 3 7.785 -4.253 -35.402 1 76.39 ? N6 TZ4 1542 B 1 HETATM 33 C C27 TZ4 . . . E 3 8.316 -5.475 -35.15 1 77.13 ? C27 TZ4 1542 B 1 HETATM 34 C C28 TZ4 . . . E 3 6.803 -3.611 -34.456 1 73.75 ? C28 TZ4 1542 B 1 HETATM 35 C C29 TZ4 . . . E 3 5.287 -4.038 -34.415 1 69.77 ? C29 TZ4 1542 B 1 HETATM 36 N N7 TZ4 . . . E 3 4.446 -3.644 -35.586 1 64.53 ? N7 TZ4 1542 B 1 HETATM 37 C C30 TZ4 . . . E 3 4.97 -3.929 -36.83 1 61.36 ? C30 TZ4 1542 B 1 HETATM 38 C C31 TZ4 . . . E 3 5.242 -2.831 -37.697 1 59.41 ? C31 TZ4 1542 B 1 HETATM 39 C C32 TZ4 . . . E 3 4.953 -1.456 -37.4 1 57.32 ? C32 TZ4 1542 B 1 HETATM 40 C C33 TZ4 . . . E 3 5.831 -3.087 -38.976 1 60.33 ? C33 TZ4 1542 B 1 HETATM 41 C C34 TZ4 . . . E 3 6.105 -2.007 -39.898 1 57.78 ? C34 TZ4 1542 B 1 HETATM 42 C C35 TZ4 . . . E 3 5.821 -0.723 -39.566 1 54.87 ? C35 TZ4 1542 B 1 HETATM 43 C C36 TZ4 . . . E 3 5.233 -0.458 -38.296 1 55.24 ? C36 TZ4 1542 B 1 HETATM 44 N N8 TZ4 . . . E 3 6.16 -4.338 -39.379 1 61.7 ? N8 TZ4 1542 B 1 HETATM 45 C C37 TZ4 . . . E 3 5.957 -5.374 -38.545 1 62.16 ? C37 TZ4 1542 B 1 HETATM 46 C C38 TZ4 . . . E 3 6.597 -6.606 -38.914 1 63.61 ? C38 TZ4 1542 B 1 HETATM 47 C C39 TZ4 . . . E 3 5.313 -5.238 -37.268 1 62.46 ? C39 TZ4 1542 B 1 HETATM 48 C C40 TZ4 . . . E 3 5.22 -6.411 -36.416 1 62.5 ? C40 TZ4 1542 B 1 HETATM 49 C C41 TZ4 . . . E 3 5.819 -7.579 -36.801 1 64.36 ? C41 TZ4 1542 B 1 HETATM 50 C C42 TZ4 . . . E 3 6.571 -7.661 -38.029 1 65.09 ? C42 TZ4 1542 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 554 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #