data_2XUQ # _model_server_result.job_id fRJxogiJPCROsZdjyF3GLQ _model_server_result.datetime_utc '2024-11-27 18:15:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xuq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1543}' # _entry.id 2XUQ # _exptl.entry_id 2XUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 661.86 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,8-DIAMINO-6-PHENYL-5-[6-[1-[2-[(1,2,3,4-TETRAHYDRO-9-ACRIDINYL)AMINO]ETHYL]-1H-1,2,3-TRIAZOL-4-YL]HEXYL]-PHENANTHRIDINIUM _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XUQ _cell.length_a 78.6 _cell.length_b 109.7 _cell.length_c 227.939 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? # _chem_comp.formula 'C42 H45 N8 1' _chem_comp.formula_weight 661.86 _chem_comp.id TZ4 _chem_comp.mon_nstd_flag . _chem_comp.name 3,8-DIAMINO-6-PHENYL-5-[6-[1-[2-[(1,2,3,4-TETRAHYDRO-9-ACRIDINYL)AMINO]ETHYL]-1H-1,2,3-TRIAZOL-4-YL]HEXYL]-PHENANTHRIDINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C19 TZ4 sing 402 n n N3 HN31 TZ4 sing 403 n n N3 HN32 TZ4 sing 404 n n C19 C18 TZ4 doub 405 n y C19 C15 TZ4 sing 406 n y C18 C17 TZ4 sing 407 n y C18 H18 TZ4 sing 408 n n C17 C16 TZ4 doub 409 n y C17 H17 TZ4 sing 410 n n C16 C14 TZ4 sing 411 n y C16 C4 TZ4 sing 412 n y C14 C15 TZ4 doub 413 n y C14 C7 TZ4 sing 414 n y C15 H15 TZ4 sing 415 n n C7 C8 TZ4 sing 416 n y C7 N2 TZ4 doub 417 n y C8 C9 TZ4 doub 418 n y C8 C13 TZ4 sing 419 n y C9 C10 TZ4 sing 420 n y C9 H9 TZ4 sing 421 n n C10 C11 TZ4 doub 422 n y C10 H10 TZ4 sing 423 n n C11 C12 TZ4 sing 424 n y C11 H11 TZ4 sing 425 n n C12 C13 TZ4 doub 426 n y C12 H12 TZ4 sing 427 n n C13 H13 TZ4 sing 428 n n C4 C3 TZ4 doub 429 n y C4 C6 TZ4 sing 430 n y C3 C2 TZ4 sing 431 n y C3 H3 TZ4 sing 432 n n C2 C1 TZ4 doub 433 n y C2 H2 TZ4 sing 434 n n C1 N1 TZ4 sing 435 n n C1 C5 TZ4 sing 436 n y N1 HN11 TZ4 sing 437 n n N1 HN12 TZ4 sing 438 n n C6 C5 TZ4 doub 439 n y C6 N2 TZ4 sing 440 n y C5 H5 TZ4 sing 441 n n N2 C20 TZ4 sing 442 n n C20 C21 TZ4 sing 443 n n C20 H201 TZ4 sing 444 n n C20 H202 TZ4 sing 445 n n C21 C22 TZ4 sing 446 n n C21 H211 TZ4 sing 447 n n C21 H212 TZ4 sing 448 n n C22 C23 TZ4 sing 449 n n C22 H221 TZ4 sing 450 n n C22 H222 TZ4 sing 451 n n C23 C24 TZ4 sing 452 n n C23 H231 TZ4 sing 453 n n C23 H232 TZ4 sing 454 n n C24 C25 TZ4 sing 455 n n C24 H241 TZ4 sing 456 n n C24 H242 TZ4 sing 457 n n C25 C26 TZ4 sing 458 n n C25 H251 TZ4 sing 459 n n C25 H252 TZ4 sing 460 n n C26 N4 TZ4 sing 461 n y C26 C27 TZ4 doub 462 n y N4 N5 TZ4 doub 463 n y N5 N6 TZ4 sing 464 n y N6 C27 TZ4 sing 465 n y N6 C28 TZ4 sing 466 n n C27 H27 TZ4 sing 467 n n C28 C29 TZ4 sing 468 n n C28 H281 TZ4 sing 469 n n C28 H282 TZ4 sing 470 n n C29 N7 TZ4 sing 471 n n C29 H291 TZ4 sing 472 n n C29 H292 TZ4 sing 473 n n N7 C30 TZ4 sing 474 n n N7 HN7 TZ4 sing 475 n n C30 C31 TZ4 doub 476 n y C30 C39 TZ4 sing 477 n y C31 C32 TZ4 sing 478 n y C31 C33 TZ4 sing 479 n y C32 C36 TZ4 doub 480 n y C32 H32 TZ4 sing 481 n n C33 C34 TZ4 sing 482 n y C33 N8 TZ4 doub 483 n y C34 C35 TZ4 doub 484 n y C34 H34 TZ4 sing 485 n n C35 C36 TZ4 sing 486 n y C35 H35 TZ4 sing 487 n n C36 H36 TZ4 sing 488 n n N8 C37 TZ4 sing 489 n y C37 C38 TZ4 sing 490 n n C37 C39 TZ4 doub 491 n y C38 C42 TZ4 sing 492 n n C38 H381 TZ4 sing 493 n n C38 H382 TZ4 sing 494 n n C39 C40 TZ4 sing 495 n n C40 C41 TZ4 sing 496 n n C40 H401 TZ4 sing 497 n n C40 H402 TZ4 sing 498 n n C41 C42 TZ4 sing 499 n n C41 H411 TZ4 sing 500 n n C41 H412 TZ4 sing 501 n n C42 H421 TZ4 sing 502 n n C42 H422 TZ4 sing 503 n n # _atom_sites.entry_id 2XUQ _atom_sites.fract_transf_matrix[1][1] 0.012723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 P6G A 1 1542 1542 P6G P6G . D 3 TZ4 A 1 1543 1543 TZ4 TZ4 . E 3 TZ4 B 1 1542 1542 TZ4 TZ4 . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . F 4 HOH A 24 2024 2024 HOH HOH . F 4 HOH A 25 2025 2025 HOH HOH . F 4 HOH A 26 2026 2026 HOH HOH . F 4 HOH A 27 2027 2027 HOH HOH . F 4 HOH A 28 2028 2028 HOH HOH . F 4 HOH A 29 2029 2029 HOH HOH . F 4 HOH A 30 2030 2030 HOH HOH . F 4 HOH A 31 2031 2031 HOH HOH . F 4 HOH A 32 2032 2032 HOH HOH . F 4 HOH A 33 2033 2033 HOH HOH . F 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH B 1 2001 2001 HOH HOH . G 4 HOH B 2 2002 2002 HOH HOH . G 4 HOH B 3 2003 2003 HOH HOH . G 4 HOH B 4 2004 2004 HOH HOH . G 4 HOH B 5 2005 2005 HOH HOH . G 4 HOH B 6 2006 2006 HOH HOH . G 4 HOH B 7 2007 2007 HOH HOH . G 4 HOH B 8 2008 2008 HOH HOH . G 4 HOH B 9 2009 2009 HOH HOH . G 4 HOH B 10 2010 2010 HOH HOH . G 4 HOH B 11 2011 2011 HOH HOH . G 4 HOH B 12 2012 2012 HOH HOH . G 4 HOH B 13 2013 2013 HOH HOH . G 4 HOH B 14 2014 2014 HOH HOH . G 4 HOH B 15 2015 2015 HOH HOH . G 4 HOH B 16 2016 2016 HOH HOH . G 4 HOH B 17 2017 2017 HOH HOH . G 4 HOH B 18 2018 2018 HOH HOH . G 4 HOH B 19 2019 2019 HOH HOH . G 4 HOH B 20 2020 2020 HOH HOH . G 4 HOH B 21 2021 2021 HOH HOH . G 4 HOH B 22 2022 2022 HOH HOH . G 4 HOH B 23 2023 2023 HOH HOH . G 4 HOH B 24 2024 2024 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 TZ4 . . . D 3 39.925 29.269 7.719 1 80.8 ? N3 TZ4 1543 A 1 HETATM 2 C C19 TZ4 . . . D 3 39.845 28.029 8.331 1 82.74 ? C19 TZ4 1543 A 1 HETATM 3 C C18 TZ4 . . . D 3 40.84 27.535 9.239 1 82.92 ? C18 TZ4 1543 A 1 HETATM 4 C C17 TZ4 . . . D 3 40.692 26.281 9.822 1 82.24 ? C17 TZ4 1543 A 1 HETATM 5 C C16 TZ4 . . . D 3 39.571 25.396 9.567 1 82.46 ? C16 TZ4 1543 A 1 HETATM 6 C C14 TZ4 . . . D 3 38.567 25.909 8.669 1 82.56 ? C14 TZ4 1543 A 1 HETATM 7 C C15 TZ4 . . . D 3 38.761 27.212 8.063 1 82.86 ? C15 TZ4 1543 A 1 HETATM 8 C C7 TZ4 . . . D 3 37.271 25.291 8.6 1 81.94 ? C7 TZ4 1543 A 1 HETATM 9 C C8 TZ4 . . . D 3 36.279 25.92 7.65 1 83.3 ? C8 TZ4 1543 A 1 HETATM 10 C C9 TZ4 . . . D 3 35.484 26.988 8.129 1 83.21 ? C9 TZ4 1543 A 1 HETATM 11 C C10 TZ4 . . . D 3 34.586 27.626 7.277 1 82.86 ? C10 TZ4 1543 A 1 HETATM 12 C C11 TZ4 . . . D 3 34.488 27.187 5.953 1 83.45 ? C11 TZ4 1543 A 1 HETATM 13 C C12 TZ4 . . . D 3 35.28 26.129 5.464 1 83.69 ? C12 TZ4 1543 A 1 HETATM 14 C C13 TZ4 . . . D 3 36.186 25.49 6.308 1 83.76 ? C13 TZ4 1543 A 1 HETATM 15 C C4 TZ4 . . . D 3 39.258 24.214 10.38 1 82 ? C4 TZ4 1543 A 1 HETATM 16 C C3 TZ4 . . . D 3 40.306 23.428 10.98 1 80.9 ? C3 TZ4 1543 A 1 HETATM 17 C C2 TZ4 . . . D 3 40.163 22.112 11.346 1 79.88 ? C2 TZ4 1543 A 1 HETATM 18 C C1 TZ4 . . . D 3 38.914 21.475 11.169 1 79.76 ? C1 TZ4 1543 A 1 HETATM 19 N N1 TZ4 . . . D 3 38.757 20.154 11.533 1 79.83 ? N1 TZ4 1543 A 1 HETATM 20 C C6 TZ4 . . . D 3 37.958 23.581 10.238 1 81.38 ? C6 TZ4 1543 A 1 HETATM 21 C C5 TZ4 . . . D 3 37.859 22.197 10.617 1 80.42 ? C5 TZ4 1543 A 1 HETATM 22 N N2 TZ4 . . . D 3 37.008 24.192 9.364 1 79.78 ? N2 TZ4 1543 A 1 HETATM 23 C C20 TZ4 . . . D 3 35.651 23.578 9.263 1 75.32 ? C20 TZ4 1543 A 1 HETATM 24 C C21 TZ4 . . . D 3 35.481 22.437 8.269 1 71.56 ? C21 TZ4 1543 A 1 HETATM 25 C C22 TZ4 . . . D 3 34.004 22.127 8.092 1 68.46 ? C22 TZ4 1543 A 1 HETATM 26 C C23 TZ4 . . . D 3 33.48 21.139 9.123 1 65.19 ? C23 TZ4 1543 A 1 HETATM 27 C C24 TZ4 . . . D 3 32.446 21.744 10.069 1 63.55 ? C24 TZ4 1543 A 1 HETATM 28 C C25 TZ4 . . . D 3 31.063 21.968 9.472 1 61.72 ? C25 TZ4 1543 A 1 HETATM 29 C C26 TZ4 . . . D 3 29.954 21.211 10.157 1 64.53 ? C26 TZ4 1543 A 1 HETATM 30 N N4 TZ4 . . . D 3 30.097 20.242 11.1 1 64.31 ? N4 TZ4 1543 A 1 HETATM 31 N N5 TZ4 . . . D 3 28.863 19.876 11.382 1 63.96 ? N5 TZ4 1543 A 1 HETATM 32 N N6 TZ4 . . . D 3 27.949 20.597 10.677 1 64.7 ? N6 TZ4 1543 A 1 HETATM 33 C C27 TZ4 . . . D 3 28.613 21.445 9.87 1 64.88 ? C27 TZ4 1543 A 1 HETATM 34 C C28 TZ4 . . . D 3 26.435 20.557 10.601 1 63.82 ? C28 TZ4 1543 A 1 HETATM 35 C C29 TZ4 . . . D 3 25.47 21.593 11.294 1 59.66 ? C29 TZ4 1543 A 1 HETATM 36 N N7 TZ4 . . . D 3 25.19 21.243 12.709 1 54.42 ? N7 TZ4 1543 A 1 HETATM 37 C C30 TZ4 . . . D 3 26.326 21.125 13.488 1 51.07 ? C30 TZ4 1543 A 1 HETATM 38 C C31 TZ4 . . . D 3 26.512 19.97 14.301 1 49.62 ? C31 TZ4 1543 A 1 HETATM 39 C C32 TZ4 . . . D 3 25.701 18.779 14.225 1 49.25 ? C32 TZ4 1543 A 1 HETATM 40 C C33 TZ4 . . . D 3 27.717 19.873 15.086 1 50.8 ? C33 TZ4 1543 A 1 HETATM 41 C C34 TZ4 . . . D 3 28.069 18.657 15.793 1 48.28 ? C34 TZ4 1543 A 1 HETATM 42 C C35 TZ4 . . . D 3 27.264 17.562 15.675 1 48.13 ? C35 TZ4 1543 A 1 HETATM 43 C C36 TZ4 . . . D 3 26.066 17.627 14.886 1 47.82 ? C36 TZ4 1543 A 1 HETATM 44 N N8 TZ4 . . . D 3 28.686 20.816 15.024 1 51.88 ? N8 TZ4 1543 A 1 HETATM 45 C C37 TZ4 . . . D 3 28.537 21.874 14.212 1 52.31 ? C37 TZ4 1543 A 1 HETATM 46 C C38 TZ4 . . . D 3 29.611 22.83 14.208 1 54.91 ? C38 TZ4 1543 A 1 HETATM 47 C C39 TZ4 . . . D 3 27.34 22.107 13.464 1 51.81 ? C39 TZ4 1543 A 1 HETATM 48 C C40 TZ4 . . . D 3 27.167 23.392 12.805 1 51.71 ? C40 TZ4 1543 A 1 HETATM 49 C C41 TZ4 . . . D 3 28.183 24.304 12.841 1 54.34 ? C41 TZ4 1543 A 1 HETATM 50 C C42 TZ4 . . . D 3 29.471 23.946 13.402 1 56.28 ? C42 TZ4 1543 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 50 #