data_2XVI # _model_server_result.job_id t5Zio1dewCiozsFgowXKKw _model_server_result.datetime_utc '2024-10-18 04:26:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xvi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1448}' # _entry.id 2XVI # _exptl.entry_id 2XVI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.19 _cell.angle_gamma 90 _cell.entry_id 2XVI _cell.length_a 159.573 _cell.length_b 70.01 _cell.length_c 140.686 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XVI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,O,P 1 1 C,L,M,N,Q 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 H N N ? 2 L N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 2XVI _atom_sites.fract_transf_matrix[1][1] 0.006267 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000021 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007108 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD A 1 1448 1448 FAD FAD . E 3 NO3 A 1 1449 1449 NO3 NO3 . F 4 MES A 1 1450 1450 MES MES . G 5 OXY A 1 1451 1451 OXY OXY . H 2 FAD B 1 1448 1448 FAD FAD . I 3 NO3 B 1 1449 1449 NO3 NO3 . J 4 MES B 1 1450 1450 MES MES . K 5 OXY B 1 1451 1451 OXY OXY . L 2 FAD C 1 1448 1448 FAD FAD . M 3 NO3 C 1 1449 1449 NO3 NO3 . N 5 OXY C 1 1450 1450 OXY OXY . O 6 HOH A 1 2001 2001 HOH HOH . O 6 HOH A 2 2002 2002 HOH HOH . O 6 HOH A 3 2003 2003 HOH HOH . O 6 HOH A 4 2004 2004 HOH HOH . O 6 HOH A 5 2005 2005 HOH HOH . O 6 HOH A 6 2006 2006 HOH HOH . O 6 HOH A 7 2007 2007 HOH HOH . O 6 HOH A 8 2008 2008 HOH HOH . O 6 HOH A 9 2009 2009 HOH HOH . O 6 HOH A 10 2010 2010 HOH HOH . O 6 HOH A 11 2011 2011 HOH HOH . O 6 HOH A 12 2012 2012 HOH HOH . O 6 HOH A 13 2013 2013 HOH HOH . O 6 HOH A 14 2014 2014 HOH HOH . O 6 HOH A 15 2015 2015 HOH HOH . O 6 HOH A 16 2016 2016 HOH HOH . O 6 HOH A 17 2017 2017 HOH HOH . O 6 HOH A 18 2018 2018 HOH HOH . O 6 HOH A 19 2019 2019 HOH HOH . O 6 HOH A 20 2020 2020 HOH HOH . O 6 HOH A 21 2021 2021 HOH HOH . O 6 HOH A 22 2022 2022 HOH HOH . O 6 HOH A 23 2023 2023 HOH HOH . O 6 HOH A 24 2024 2024 HOH HOH . O 6 HOH A 25 2025 2025 HOH HOH . O 6 HOH A 26 2026 2026 HOH HOH . O 6 HOH A 27 2027 2027 HOH HOH . O 6 HOH A 28 2028 2028 HOH HOH . O 6 HOH A 29 2029 2029 HOH HOH . O 6 HOH A 30 2030 2030 HOH HOH . O 6 HOH A 31 2031 2031 HOH HOH . O 6 HOH A 32 2032 2032 HOH HOH . O 6 HOH A 33 2033 2033 HOH HOH . O 6 HOH A 34 2034 2034 HOH HOH . O 6 HOH A 35 2035 2035 HOH HOH . O 6 HOH A 36 2036 2036 HOH HOH . O 6 HOH A 37 2037 2037 HOH HOH . O 6 HOH A 38 2038 2038 HOH HOH . O 6 HOH A 39 2039 2039 HOH HOH . O 6 HOH A 40 2040 2040 HOH HOH . O 6 HOH A 41 2041 2041 HOH HOH . O 6 HOH A 42 2042 2042 HOH HOH . O 6 HOH A 43 2043 2043 HOH HOH . O 6 HOH A 44 2044 2044 HOH HOH . O 6 HOH A 45 2045 2045 HOH HOH . O 6 HOH A 46 2046 2046 HOH HOH . O 6 HOH A 47 2047 2047 HOH HOH . O 6 HOH A 48 2048 2048 HOH HOH . O 6 HOH A 49 2049 2049 HOH HOH . P 6 HOH B 1 2001 2001 HOH HOH . P 6 HOH B 2 2002 2002 HOH HOH . P 6 HOH B 3 2003 2003 HOH HOH . P 6 HOH B 4 2004 2004 HOH HOH . P 6 HOH B 5 2005 2005 HOH HOH . P 6 HOH B 6 2006 2006 HOH HOH . P 6 HOH B 7 2007 2007 HOH HOH . P 6 HOH B 8 2008 2008 HOH HOH . P 6 HOH B 9 2009 2009 HOH HOH . P 6 HOH B 10 2010 2010 HOH HOH . P 6 HOH B 11 2011 2011 HOH HOH . P 6 HOH B 12 2012 2012 HOH HOH . P 6 HOH B 13 2013 2013 HOH HOH . P 6 HOH B 14 2014 2014 HOH HOH . P 6 HOH B 15 2015 2015 HOH HOH . P 6 HOH B 16 2016 2016 HOH HOH . P 6 HOH B 17 2017 2017 HOH HOH . P 6 HOH B 18 2018 2018 HOH HOH . P 6 HOH B 19 2019 2019 HOH HOH . P 6 HOH B 20 2020 2020 HOH HOH . P 6 HOH B 21 2021 2021 HOH HOH . P 6 HOH B 22 2022 2022 HOH HOH . P 6 HOH B 23 2023 2023 HOH HOH . P 6 HOH B 24 2024 2024 HOH HOH . P 6 HOH B 25 2025 2025 HOH HOH . P 6 HOH B 26 2026 2026 HOH HOH . P 6 HOH B 27 2027 2027 HOH HOH . P 6 HOH B 28 2028 2028 HOH HOH . P 6 HOH B 29 2029 2029 HOH HOH . P 6 HOH B 30 2030 2030 HOH HOH . P 6 HOH B 31 2031 2031 HOH HOH . P 6 HOH B 32 2032 2032 HOH HOH . P 6 HOH B 33 2033 2033 HOH HOH . P 6 HOH B 34 2034 2034 HOH HOH . P 6 HOH B 35 2035 2035 HOH HOH . P 6 HOH B 36 2036 2036 HOH HOH . P 6 HOH B 37 2037 2037 HOH HOH . P 6 HOH B 38 2038 2038 HOH HOH . P 6 HOH B 39 2039 2039 HOH HOH . P 6 HOH B 40 2040 2040 HOH HOH . P 6 HOH B 41 2041 2041 HOH HOH . P 6 HOH B 42 2042 2042 HOH HOH . P 6 HOH B 43 2043 2043 HOH HOH . P 6 HOH B 44 2044 2044 HOH HOH . Q 6 HOH C 1 2001 2001 HOH HOH . Q 6 HOH C 2 2002 2002 HOH HOH . Q 6 HOH C 3 2003 2003 HOH HOH . Q 6 HOH C 4 2004 2004 HOH HOH . Q 6 HOH C 5 2005 2005 HOH HOH . Q 6 HOH C 6 2006 2006 HOH HOH . Q 6 HOH C 7 2007 2007 HOH HOH . Q 6 HOH C 8 2008 2008 HOH HOH . Q 6 HOH C 9 2009 2009 HOH HOH . Q 6 HOH C 10 2010 2010 HOH HOH . Q 6 HOH C 11 2011 2011 HOH HOH . Q 6 HOH C 12 2012 2012 HOH HOH . Q 6 HOH C 13 2013 2013 HOH HOH . Q 6 HOH C 14 2014 2014 HOH HOH . Q 6 HOH C 15 2015 2015 HOH HOH . Q 6 HOH C 16 2016 2016 HOH HOH . Q 6 HOH C 17 2017 2017 HOH HOH . Q 6 HOH C 18 2018 2018 HOH HOH . Q 6 HOH C 19 2019 2019 HOH HOH . Q 6 HOH C 20 2020 2020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . L 2 -15.739 -29.596 2.688 1 51.74 ? PA FAD 1448 C 1 HETATM 2 O O1A FAD . . . L 2 -14.586 -28.993 1.923 1 52.37 ? O1A FAD 1448 C 1 HETATM 3 O O2A FAD . . . L 2 -16.443 -28.531 3.477 1 51.08 ? O2A FAD 1448 C 1 HETATM 4 O O5B FAD . . . L 2 -15.231 -30.78 3.651 1 52.29 ? O5B FAD 1448 C 1 HETATM 5 C C5B FAD . . . L 2 -14.115 -31.592 3.383 1 50.05 ? C5B FAD 1448 C 1 HETATM 6 C C4B FAD . . . L 2 -13.499 -31.975 4.727 1 49.81 ? C4B FAD 1448 C 1 HETATM 7 O O4B FAD . . . L 2 -12.606 -33.065 4.582 1 49.05 ? O4B FAD 1448 C 1 HETATM 8 C C3B FAD . . . L 2 -12.702 -30.831 5.338 1 49.29 ? C3B FAD 1448 C 1 HETATM 9 O O3B FAD . . . L 2 -13.018 -30.711 6.706 1 48.51 ? O3B FAD 1448 C 1 HETATM 10 C C2B FAD . . . L 2 -11.255 -31.242 5.191 1 48.4 ? C2B FAD 1448 C 1 HETATM 11 O O2B FAD . . . L 2 -10.512 -30.747 6.282 1 48.04 ? O2B FAD 1448 C 1 HETATM 12 C C1B FAD . . . L 2 -11.354 -32.757 5.159 1 47.86 ? C1B FAD 1448 C 1 HETATM 13 N N9A FAD . . . L 2 -10.279 -33.414 4.403 1 48.42 ? N9A FAD 1448 C 1 HETATM 14 C C8A FAD . . . L 2 -9.906 -33.196 3.102 1 48.06 ? C8A FAD 1448 C 1 HETATM 15 N N7A FAD . . . L 2 -8.88 -34.028 2.821 1 47.76 ? N7A FAD 1448 C 1 HETATM 16 C C5A FAD . . . L 2 -8.589 -34.773 3.91 1 47.42 ? C5A FAD 1448 C 1 HETATM 17 C C6A FAD . . . L 2 -7.634 -35.764 4.166 1 47.02 ? C6A FAD 1448 C 1 HETATM 18 N N6A FAD . . . L 2 -6.689 -36.075 3.267 1 44.61 ? N6A FAD 1448 C 1 HETATM 19 N N1A FAD . . . L 2 -7.609 -36.356 5.419 1 46.58 ? N1A FAD 1448 C 1 HETATM 20 C C2A FAD . . . L 2 -8.494 -35.968 6.405 1 46.65 ? C2A FAD 1448 C 1 HETATM 21 N N3A FAD . . . L 2 -9.423 -34.982 6.145 1 47.65 ? N3A FAD 1448 C 1 HETATM 22 C C4A FAD . . . L 2 -9.472 -34.398 4.915 1 48.21 ? C4A FAD 1448 C 1 HETATM 23 N N1 FAD . . . L 2 -22.257 -23.527 -0.261 1 51.7 ? N1 FAD 1448 C 1 HETATM 24 C C2 FAD . . . L 2 -23.455 -22.947 0.099 1 52.33 ? C2 FAD 1448 C 1 HETATM 25 O O2 FAD . . . L 2 -24.475 -23.632 0.161 1 52.7 ? O2 FAD 1448 C 1 HETATM 26 N N3 FAD . . . L 2 -23.512 -21.598 0.391 1 52.42 ? N3 FAD 1448 C 1 HETATM 27 C C4 FAD . . . L 2 -22.376 -20.827 0.318 1 52.05 ? C4 FAD 1448 C 1 HETATM 28 O O4 FAD . . . L 2 -22.439 -19.628 0.576 1 53.82 ? O4 FAD 1448 C 1 HETATM 29 C C4X FAD . . . L 2 -21.165 -21.406 -0.041 1 51.65 ? C4X FAD 1448 C 1 HETATM 30 N N5 FAD . . . L 2 -20.021 -20.636 -0.113 1 50.82 ? N5 FAD 1448 C 1 HETATM 31 C C5X FAD . . . L 2 -18.818 -21.212 -0.476 1 50.47 ? C5X FAD 1448 C 1 HETATM 32 C C6 FAD . . . L 2 -17.672 -20.417 -0.541 1 49.27 ? C6 FAD 1448 C 1 HETATM 33 C C7 FAD . . . L 2 -16.444 -20.971 -0.898 1 48.66 ? C7 FAD 1448 C 1 HETATM 34 C C7M FAD . . . L 2 -15.236 -20.073 -0.955 1 47.36 ? C7M FAD 1448 C 1 HETATM 35 C C8 FAD . . . L 2 -16.368 -22.337 -1.197 1 48.51 ? C8 FAD 1448 C 1 HETATM 36 C C8M FAD . . . L 2 -15.069 -22.98 -1.589 1 48.16 ? C8M FAD 1448 C 1 HETATM 37 C C9 FAD . . . L 2 -17.514 -23.128 -1.134 1 48.93 ? C9 FAD 1448 C 1 HETATM 38 C C9A FAD . . . L 2 -18.751 -22.578 -0.773 1 49.87 ? C9A FAD 1448 C 1 HETATM 39 N N10 FAD . . . L 2 -19.906 -23.353 -0.692 1 50.05 ? N10 FAD 1448 C 1 HETATM 40 C C10 FAD . . . L 2 -21.106 -22.765 -0.332 1 51.19 ? C10 FAD 1448 C 1 HETATM 41 C C1' FAD . . . L 2 -19.95 -24.769 -1.197 1 50.04 ? C1' FAD 1448 C 1 HETATM 42 C C2' FAD . . . L 2 -19.242 -25.722 -0.239 1 49.63 ? C2' FAD 1448 C 1 HETATM 43 O O2' FAD . . . L 2 -18.555 -26.651 -1.038 1 49.28 ? O2' FAD 1448 C 1 HETATM 44 C C3' FAD . . . L 2 -20.24 -26.415 0.692 1 49.84 ? C3' FAD 1448 C 1 HETATM 45 O O3' FAD . . . L 2 -20.864 -25.419 1.473 1 49.38 ? O3' FAD 1448 C 1 HETATM 46 C C4' FAD . . . L 2 -19.663 -27.487 1.641 1 49.61 ? C4' FAD 1448 C 1 HETATM 47 O O4' FAD . . . L 2 -18.748 -26.946 2.561 1 48.62 ? O4' FAD 1448 C 1 HETATM 48 C C5' FAD . . . L 2 -18.99 -28.671 0.959 1 50.07 ? C5' FAD 1448 C 1 HETATM 49 O O5' FAD . . . L 2 -19.221 -29.784 1.779 1 51.38 ? O5' FAD 1448 C 1 HETATM 50 P P FAD . . . L 2 -18.153 -30.955 2.008 1 52.37 ? P FAD 1448 C 1 HETATM 51 O O1P FAD . . . L 2 -18.202 -31.369 3.46 1 53.79 ? O1P FAD 1448 C 1 HETATM 52 O O2P FAD . . . L 2 -18.463 -32.142 1.129 1 52.61 ? O2P FAD 1448 C 1 HETATM 53 O O3P FAD . . . L 2 -16.709 -30.341 1.635 1 51.88 ? O3P FAD 1448 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 53 #