data_2XVQ # _model_server_result.job_id 6z2_Va4LG4DGcV-wguObRg _model_server_result.datetime_utc '2025-01-10 18:04:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 2XVQ # _exptl.entry_id 2XVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.379 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DANSYL-L-SARCOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.15 _cell.angle_beta 90.21 _cell.angle_gamma 65.01 _cell.entry_id 2XVQ _cell.length_a 55.485 _cell.length_b 55.355 _cell.length_c 120.738 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf34 B SG CYS 558 B CYS 558 1_555 B SG CYS 567 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C15 H18 N2 O4 S' _chem_comp.formula_weight 322.379 _chem_comp.id 9DS _chem_comp.mon_nstd_flag . _chem_comp.name DANSYL-L-SARCOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C OXT 9DS sing 1 n n C O 9DS doub 2 n n C CA 9DS sing 3 n n C6 N 9DS sing 4 n n N S8 9DS sing 5 n n N CA 9DS sing 6 n n S8 O9 9DS doub 7 n n S8 O10 9DS doub 8 n n S8 C11 9DS sing 9 n n C11 C12 9DS sing 10 n y C11 C16 9DS doub 11 n y C12 C13 9DS doub 12 n y C13 C14 9DS sing 13 n y C14 C15 9DS doub 14 n y C15 C16 9DS sing 15 n y C15 C20 9DS sing 16 n y C16 C17 9DS sing 17 n y C17 C18 9DS doub 18 n y C18 C19 9DS sing 19 n y C19 C20 9DS doub 20 n y C20 N21 9DS sing 21 n n N21 C22 9DS sing 22 n n N21 C23 9DS sing 23 n n CA HA 9DS sing 24 n n CA HA2 9DS sing 25 n n C6 H61C 9DS sing 26 n n C6 H62C 9DS sing 27 n n C6 H63C 9DS sing 28 n n C12 H12 9DS sing 29 n n C13 H13 9DS sing 30 n n C14 H14 9DS sing 31 n n C17 H17 9DS sing 32 n n C18 H18 9DS sing 33 n n C19 H19 9DS sing 34 n n C22 H221 9DS sing 35 n n C22 H222 9DS sing 36 n n C22 H223 9DS sing 37 n n C23 H231 9DS sing 38 n n C23 H232 9DS sing 39 n n C23 H233 9DS sing 40 n n OXT HXT 9DS sing 41 n n # _atom_sites.entry_id 2XVQ _atom_sites.fract_transf_matrix[1][1] 0.018023 _atom_sites.fract_transf_matrix[1][2] -0.0084 _atom_sites.fract_transf_matrix[1][3] 0.001529 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019931 _atom_sites.fract_transf_matrix[2][3] -0.003469 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008407 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9DS A 1 2001 2001 9DS 9DS . D 2 9DS B 1 2001 2001 9DS 9DS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 9DS . . . D 2 55.367 32.725 76.554 1 68.86 ? N 9DS 2001 B 1 HETATM 2 C CA 9DS . . . D 2 54.603 32.866 77.766 1 75.08 ? CA 9DS 2001 B 1 HETATM 3 C C 9DS . . . D 2 54.41 31.492 78.345 1 81.05 ? C 9DS 2001 B 1 HETATM 4 O O 9DS . . . D 2 53.277 31.03 78.485 1 84.42 ? O 9DS 2001 B 1 HETATM 5 O OXT 9DS . . . D 2 55.529 30.87 78.622 1 84.98 ? OXT 9DS 2001 B 1 HETATM 6 C C6 9DS . . . D 2 56.852 32.903 76.607 1 71.59 ? C6 9DS 2001 B 1 HETATM 7 S S8 9DS . . . D 2 54.603 32.791 75.122 1 63.88 ? S8 9DS 2001 B 1 HETATM 8 O O9 9DS . . . D 2 54.495 31.459 74.654 1 63.48 ? O9 9DS 2001 B 1 HETATM 9 O O10 9DS . . . D 2 53.405 33.535 75.266 1 66.04 ? O10 9DS 2001 B 1 HETATM 10 C C11 9DS . . . D 2 55.611 33.729 73.965 1 62.39 ? C11 9DS 2001 B 1 HETATM 11 C C12 9DS . . . D 2 56.507 32.981 73.19 1 62.21 ? C12 9DS 2001 B 1 HETATM 12 C C13 9DS . . . D 2 57.361 33.614 72.255 1 61.49 ? C13 9DS 2001 B 1 HETATM 13 C C14 9DS . . . D 2 57.321 34.975 72.048 1 61.58 ? C14 9DS 2001 B 1 HETATM 14 C C15 9DS . . . D 2 56.429 35.805 72.817 1 61.48 ? C15 9DS 2001 B 1 HETATM 15 C C16 9DS . . . D 2 55.489 35.18 73.794 1 61.61 ? C16 9DS 2001 B 1 HETATM 16 C C17 9DS . . . D 2 54.61 36.038 74.539 1 61.26 ? C17 9DS 2001 B 1 HETATM 17 C C18 9DS . . . D 2 54.577 37.406 74.313 1 61.62 ? C18 9DS 2001 B 1 HETATM 18 C C19 9DS . . . D 2 55.471 38.019 73.352 1 61.89 ? C19 9DS 2001 B 1 HETATM 19 C C20 9DS . . . D 2 56.367 37.244 72.596 1 60.51 ? C20 9DS 2001 B 1 HETATM 20 N N21 9DS . . . D 2 57.288 37.831 71.618 1 59.82 ? N21 9DS 2001 B 1 HETATM 21 C C23 9DS . . . D 2 58.457 38.469 72.222 1 61.56 ? C23 9DS 2001 B 1 HETATM 22 C C22 9DS . . . D 2 56.674 38.87 70.778 1 60.58 ? C22 9DS 2001 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #