data_2XVV # _model_server_result.job_id d73UHo_hwIdJKU1oOnpu0Q _model_server_result.datetime_utc '2025-01-10 14:11:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2001}' # _entry.id 2XVV # _exptl.entry_id 2XVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 365.404 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DANSYL-L-ASPARAGINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.18 _cell.angle_gamma 90 _cell.entry_id 2XVV _cell.length_a 187.84 _cell.length_b 38.89 _cell.length_c 95.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C16 H19 N3 O5 S' _chem_comp.formula_weight 365.404 _chem_comp.id 9DN _chem_comp.mon_nstd_flag n _chem_comp.name DANSYL-L-ASPARAGINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 O2 9DN doub 1 n n S1 O3 9DN doub 2 n n S1 C1 9DN sing 3 n n S1 N 9DN sing 4 n n OXT C 9DN sing 5 n n N1 C10 9DN sing 6 n n N1 C11 9DN sing 7 n n N1 C12 9DN sing 8 n n C1 C2 9DN sing 9 n y C1 C6 9DN doub 10 n y C2 C3 9DN doub 11 n y C3 C4 9DN sing 12 n y C4 C5 9DN doub 13 n y C5 C6 9DN sing 14 n y C5 C10 9DN sing 15 n y C6 C7 9DN sing 16 n y C7 C8 9DN doub 17 n y C8 C9 9DN sing 18 n y C9 C10 9DN doub 19 n y N CA 9DN sing 20 n n CA C 9DN sing 21 n n CA CB 9DN sing 22 n n C O 9DN doub 23 n n CB CG 9DN sing 24 n n CG OD1 9DN doub 25 n n CG ND2 9DN sing 26 n n N H 9DN sing 27 n n OXT HXT 9DN sing 28 n n C11 H111 9DN sing 29 n n C11 H112 9DN sing 30 n n C11 H113 9DN sing 31 n n C12 H121 9DN sing 32 n n C12 H122 9DN sing 33 n n C12 H123 9DN sing 34 n n C2 H2 9DN sing 35 n n C3 H3 9DN sing 36 n n C4 H4 9DN sing 37 n n C7 H7 9DN sing 38 n n C8 H8 9DN sing 39 n n C9 H9 9DN sing 40 n n CA HA 9DN sing 41 n n CB HB1C 9DN sing 42 n n CB HB2C 9DN sing 43 n n ND2 HD21 9DN sing 44 n n ND2 HD22 9DN sing 45 n n # _atom_sites.entry_id 2XVV _atom_sites.fract_transf_matrix[1][1] 0.005324 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001545 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1001 1001 MYR MYR . C 2 MYR A 1 1002 1002 MYR MYR . D 2 MYR A 1 1003 1003 MYR MYR . E 2 MYR A 1 1004 1004 MYR MYR . F 2 MYR A 1 1005 1005 MYR MYR . G 2 MYR A 1 1006 1006 MYR MYR . H 3 9DN A 1 2001 2001 9DN 9DN . I 3 9DN A 1 2002 2002 9DN 9DN . J 4 HOH A 1 3001 3001 HOH HOH . J 4 HOH A 2 3002 3002 HOH HOH . J 4 HOH A 3 3003 3003 HOH HOH . J 4 HOH A 4 3004 3004 HOH HOH . J 4 HOH A 5 3005 3005 HOH HOH . J 4 HOH A 6 3006 3006 HOH HOH . J 4 HOH A 7 3007 3007 HOH HOH . J 4 HOH A 8 3008 3008 HOH HOH . J 4 HOH A 9 3009 3009 HOH HOH . J 4 HOH A 10 3010 3010 HOH HOH . J 4 HOH A 11 3011 3011 HOH HOH . J 4 HOH A 12 3012 3012 HOH HOH . J 4 HOH A 13 3013 3013 HOH HOH . J 4 HOH A 14 3014 3014 HOH HOH . J 4 HOH A 15 3015 3015 HOH HOH . J 4 HOH A 16 3016 3016 HOH HOH . J 4 HOH A 17 3017 3017 HOH HOH . J 4 HOH A 18 3018 3018 HOH HOH . J 4 HOH A 19 3019 3019 HOH HOH . J 4 HOH A 20 3020 3020 HOH HOH . J 4 HOH A 21 3021 3021 HOH HOH . J 4 HOH A 22 3022 3022 HOH HOH . J 4 HOH A 23 3023 3023 HOH HOH . J 4 HOH A 24 3024 3024 HOH HOH . J 4 HOH A 25 3025 3025 HOH HOH . J 4 HOH A 26 3026 3026 HOH HOH . J 4 HOH A 27 3027 3027 HOH HOH . J 4 HOH A 28 3028 3028 HOH HOH . J 4 HOH A 29 3029 3029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 9DN . . . H 3 30.334 15.169 10.827 1 59.74 ? N 9DN 2001 A 1 HETATM 2 C CA 9DN . . . H 3 29.678 14.313 11.799 1 60.79 ? CA 9DN 2001 A 1 HETATM 3 C C 9DN . . . H 3 28.148 14.277 11.781 1 62.78 ? C 9DN 2001 A 1 HETATM 4 O O 9DN . . . H 3 27.498 15.393 11.689 1 64.17 ? O 9DN 2001 A 1 HETATM 5 C CB 9DN . . . H 3 30.204 14.71 13.187 1 62.38 ? CB 9DN 2001 A 1 HETATM 6 C CG 9DN . . . H 3 31.185 13.683 13.659 1 63.72 ? CG 9DN 2001 A 1 HETATM 7 O OD1 9DN . . . H 3 32.396 13.929 13.671 1 63.83 ? OD1 9DN 2001 A 1 HETATM 8 N ND2 9DN . . . H 3 30.689 12.513 14.051 1 66.99 ? ND2 9DN 2001 A 1 HETATM 9 O OXT 9DN . . . H 3 27.534 13.224 11.86 1 64.47 ? OXT 9DN 2001 A 1 HETATM 10 S S1 9DN . . . H 3 30.616 14.673 9.29 1 56.21 ? S1 9DN 2001 A 1 HETATM 11 O O2 9DN . . . H 3 30.71 13.243 9.279 1 58.93 ? O2 9DN 2001 A 1 HETATM 12 O O3 9DN . . . H 3 29.566 15.28 8.501 1 58.38 ? O3 9DN 2001 A 1 HETATM 13 N N1 9DN . . . H 3 37.206 16.135 9.113 1 51.68 ? N1 9DN 2001 A 1 HETATM 14 C C1 9DN . . . H 3 32.194 15.43 8.8 1 54.85 ? C1 9DN 2001 A 1 HETATM 15 C C2 9DN . . . H 3 32.175 16.387 7.805 1 52.83 ? C2 9DN 2001 A 1 HETATM 16 C C3 9DN . . . H 3 33.367 17.029 7.369 1 52.33 ? C3 9DN 2001 A 1 HETATM 17 C C4 9DN . . . H 3 34.573 16.706 7.949 1 53.37 ? C4 9DN 2001 A 1 HETATM 18 C C5 9DN . . . H 3 34.687 15.724 8.991 1 53.42 ? C5 9DN 2001 A 1 HETATM 19 C C6 9DN . . . H 3 33.454 15.041 9.456 1 53.36 ? C6 9DN 2001 A 1 HETATM 20 C C7 9DN . . . H 3 33.581 14.074 10.48 1 54.9 ? C7 9DN 2001 A 1 HETATM 21 C C8 9DN . . . H 3 34.813 13.764 11.052 1 53.4 ? C8 9DN 2001 A 1 HETATM 22 C C9 9DN . . . H 3 36.025 14.426 10.619 1 52.82 ? C9 9DN 2001 A 1 HETATM 23 C C10 9DN . . . H 3 36.005 15.425 9.583 1 52.22 ? C10 9DN 2001 A 1 HETATM 24 C C11 9DN . . . H 3 37.423 17.389 9.866 1 51.26 ? C11 9DN 2001 A 1 HETATM 25 C C12 9DN . . . H 3 38.479 15.354 9.253 1 51.36 ? C12 9DN 2001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 25 #