data_2XVW # _model_server_result.job_id MSpY7OSJiDuFwE5mxZYB_g _model_server_result.datetime_utc '2024-11-06 00:08:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 2XVW # _exptl.entry_id 2XVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.64 _cell.angle_gamma 90 _cell.entry_id 2XVW _cell.length_a 187.08 _cell.length_b 38.76 _cell.length_c 95.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 291 n n C1 O2 MYR sing 292 n n C1 C2 MYR sing 293 n n O2 HO2 MYR sing 294 n n C2 C3 MYR sing 295 n n C2 H21 MYR sing 296 n n C2 H22 MYR sing 297 n n C3 C4 MYR sing 298 n n C3 H31 MYR sing 299 n n C3 H32 MYR sing 300 n n C4 C5 MYR sing 301 n n C4 H41 MYR sing 302 n n C4 H42 MYR sing 303 n n C5 C6 MYR sing 304 n n C5 H51 MYR sing 305 n n C5 H52 MYR sing 306 n n C6 C7 MYR sing 307 n n C6 H61 MYR sing 308 n n C6 H62 MYR sing 309 n n C7 C8 MYR sing 310 n n C7 H71 MYR sing 311 n n C7 H72 MYR sing 312 n n C8 C9 MYR sing 313 n n C8 H81 MYR sing 314 n n C8 H82 MYR sing 315 n n C9 C10 MYR sing 316 n n C9 H91 MYR sing 317 n n C9 H92 MYR sing 318 n n C10 C11 MYR sing 319 n n C10 H101 MYR sing 320 n n C10 H102 MYR sing 321 n n C11 C12 MYR sing 322 n n C11 H111 MYR sing 323 n n C11 H112 MYR sing 324 n n C12 C13 MYR sing 325 n n C12 H121 MYR sing 326 n n C12 H122 MYR sing 327 n n C13 C14 MYR sing 328 n n C13 H131 MYR sing 329 n n C13 H132 MYR sing 330 n n C14 H141 MYR sing 331 n n C14 H142 MYR sing 332 n n C14 H143 MYR sing 333 n n # _atom_sites.entry_id 2XVW _atom_sites.fract_transf_matrix[1][1] 0.005345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001496 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1001 1001 MYR MYR . C 2 MYR A 1 1002 1002 MYR MYR . D 2 MYR A 1 1003 1003 MYR MYR . E 2 MYR A 1 1004 1004 MYR MYR . F 2 MYR A 1 1005 1005 MYR MYR . G 2 MYR A 1 1006 1006 MYR MYR . H 3 9NR A 1 2001 2001 9NR 9NR . I 3 9NR A 1 2002 2002 9NR 9NR . J 4 HOH A 1 2003 2003 HOH HOH . J 4 HOH A 2 2004 2004 HOH HOH . J 4 HOH A 3 2005 2005 HOH HOH . J 4 HOH A 4 2006 2006 HOH HOH . J 4 HOH A 5 2007 2007 HOH HOH . J 4 HOH A 6 2008 2008 HOH HOH . J 4 HOH A 7 2009 2009 HOH HOH . J 4 HOH A 8 2010 2010 HOH HOH . J 4 HOH A 9 2011 2011 HOH HOH . J 4 HOH A 10 2012 2012 HOH HOH . J 4 HOH A 11 2013 2013 HOH HOH . J 4 HOH A 12 2014 2014 HOH HOH . J 4 HOH A 13 2015 2015 HOH HOH . J 4 HOH A 14 2016 2016 HOH HOH . J 4 HOH A 15 2017 2017 HOH HOH . J 4 HOH A 16 2018 2018 HOH HOH . J 4 HOH A 17 2019 2019 HOH HOH . J 4 HOH A 18 2020 2020 HOH HOH . J 4 HOH A 19 2021 2021 HOH HOH . J 4 HOH A 20 2022 2022 HOH HOH . J 4 HOH A 21 2023 2023 HOH HOH . J 4 HOH A 22 2024 2024 HOH HOH . J 4 HOH A 23 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . F 2 1.321 12.391 37.946 1 73.11 ? C1 MYR 1005 A 1 HETATM 2 O O1 MYR . . . F 2 0.77 12.245 39.058 1 74.67 ? O1 MYR 1005 A 1 HETATM 3 O O2 MYR . . . F 2 1.645 13.512 37.504 1 74.88 ? O2 MYR 1005 A 1 HETATM 4 C C2 MYR . . . F 2 1.62 11.157 37.095 1 70.64 ? C2 MYR 1005 A 1 HETATM 5 C C3 MYR . . . F 2 0.435 10.19 37.103 1 67.59 ? C3 MYR 1005 A 1 HETATM 6 C C4 MYR . . . F 2 1.013 8.9 37.654 1 65.74 ? C4 MYR 1005 A 1 HETATM 7 C C5 MYR . . . F 2 -0.005 8.177 38.504 1 63.36 ? C5 MYR 1005 A 1 HETATM 8 C C6 MYR . . . F 2 0.343 6.718 38.714 1 61.92 ? C6 MYR 1005 A 1 HETATM 9 C C7 MYR . . . F 2 -0.924 5.877 38.823 1 62.17 ? C7 MYR 1005 A 1 HETATM 10 C C8 MYR . . . F 2 -0.815 4.816 39.909 1 61.65 ? C8 MYR 1005 A 1 HETATM 11 C C9 MYR . . . F 2 -2.154 4.585 40.587 1 60.93 ? C9 MYR 1005 A 1 HETATM 12 C C10 MYR . . . F 2 -2.418 3.106 40.774 1 60.41 ? C10 MYR 1005 A 1 HETATM 13 C C11 MYR . . . F 2 -3.789 2.85 41.38 1 60.54 ? C11 MYR 1005 A 1 HETATM 14 C C12 MYR . . . F 2 -4.634 1.971 40.468 1 61.86 ? C12 MYR 1005 A 1 HETATM 15 C C13 MYR . . . F 2 -4.553 0.5 40.86 1 60.58 ? C13 MYR 1005 A 1 HETATM 16 C C14 MYR . . . F 2 -5.488 -0.332 40.008 1 60.16 ? C14 MYR 1005 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #