data_2XW0 # _model_server_result.job_id qvx6wZS_AdWfbjLekdPWyQ _model_server_result.datetime_utc '2024-11-05 04:04:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2002}' # _entry.id 2XW0 # _exptl.entry_id 2XW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.475 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DANSYL-L-PHENYLALANINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.12 _cell.angle_beta 91.04 _cell.angle_gamma 64.78 _cell.entry_id 2XW0 _cell.length_a 55.172 _cell.length_b 55.429 _cell.length_c 119.937 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf34 B SG CYS 558 B CYS 558 1_555 B SG CYS 567 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C21 H22 N2 O4 S' _chem_comp.formula_weight 398.475 _chem_comp.id 9NF _chem_comp.mon_nstd_flag n _chem_comp.name DANSYL-L-PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 9NF sing 1 n n N S1 9NF sing 2 n n CA C 9NF sing 3 n n OXT C 9NF sing 4 n n O C 9NF doub 5 n n CA CB 9NF sing 6 n n CB CG 9NF sing 7 n n CG CD1 9NF sing 8 n y CG CD2 9NF doub 9 n y CD1 CE1 9NF doub 10 n y CD2 CE2 9NF sing 11 n y CE1 CZ 9NF sing 12 n y CE2 CZ 9NF doub 13 n y S1 O2 9NF doub 14 n n S1 O3 9NF doub 15 n n S1 C1 9NF sing 16 n n N1 C10 9NF sing 17 n n N1 C11 9NF sing 18 n n N1 C12 9NF sing 19 n n C1 C2 9NF sing 20 n y C1 C6 9NF doub 21 n y C2 C3 9NF doub 22 n y C3 C4 9NF sing 23 n y C4 C5 9NF doub 24 n y C5 C6 9NF sing 25 n y C5 C10 9NF sing 26 n y C6 C7 9NF sing 27 n y C7 C8 9NF doub 28 n y C8 C9 9NF sing 29 n y C9 C10 9NF doub 30 n y N H 9NF sing 31 n n CA HA 9NF sing 32 n n CB HB1C 9NF sing 33 n n CB HB2C 9NF sing 34 n n CD1 HD1 9NF sing 35 n n CD2 HD2 9NF sing 36 n n CE1 HE1 9NF sing 37 n n CE2 HE2 9NF sing 38 n n CZ HZ 9NF sing 39 n n C11 H111 9NF sing 40 n n C11 H112 9NF sing 41 n n C11 H113 9NF sing 42 n n C12 H121 9NF sing 43 n n C12 H122 9NF sing 44 n n C12 H123 9NF sing 45 n n C2 H2 9NF sing 46 n n C3 H3 9NF sing 47 n n C4 H4 9NF sing 48 n n C7 H7 9NF sing 49 n n C8 H8 9NF sing 50 n n C9 H9 9NF sing 51 n n OXT HXT 9NF sing 52 n n # _atom_sites.entry_id 2XW0 _atom_sites.fract_transf_matrix[1][1] 0.018125 _atom_sites.fract_transf_matrix[1][2] -0.008537 _atom_sites.fract_transf_matrix[1][3] 0.001889 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019942 _atom_sites.fract_transf_matrix[2][3] -0.003633 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9NF A 1 2001 2001 9NF 9NF . D 2 9NF A 1 2002 2002 9NF 9NF . E 2 9NF B 1 2001 2001 9NF 9NF . F 2 9NF B 1 2002 2002 9NF 9NF . G 3 HOH A 1 2003 2003 HOH HOH . G 3 HOH A 2 2004 2004 HOH HOH . G 3 HOH A 3 2005 2005 HOH HOH . G 3 HOH A 4 2006 2006 HOH HOH . G 3 HOH A 5 2007 2007 HOH HOH . G 3 HOH A 6 2008 2008 HOH HOH . G 3 HOH A 7 2009 2009 HOH HOH . G 3 HOH A 8 2010 2010 HOH HOH . G 3 HOH A 9 2011 2011 HOH HOH . G 3 HOH A 10 2012 2012 HOH HOH . G 3 HOH A 11 2013 2013 HOH HOH . G 3 HOH A 12 2014 2014 HOH HOH . H 3 HOH B 1 2003 2003 HOH HOH . H 3 HOH B 2 2004 2004 HOH HOH . H 3 HOH B 3 2005 2005 HOH HOH . H 3 HOH B 4 2006 2006 HOH HOH . H 3 HOH B 5 2007 2007 HOH HOH . H 3 HOH B 6 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 9NF . . . D 2 5.431 -10.774 4.501 1 71.37 ? N 9NF 2002 A 1 HETATM 2 C CA 9NF . . . D 2 4.381 -10.312 5.416 1 71.47 ? CA 9NF 2002 A 1 HETATM 3 C C 9NF . . . D 2 3.862 -8.9 5.13 1 72.51 ? C 9NF 2002 A 1 HETATM 4 C CB 9NF . . . D 2 4.839 -10.264 6.882 1 71.62 ? CB 9NF 2002 A 1 HETATM 5 C CG 9NF . . . D 2 5.618 -11.437 7.413 1 69.48 ? CG 9NF 2002 A 1 HETATM 6 C CD1 9NF . . . D 2 5.062 -12.302 8.396 1 69.96 ? CD1 9NF 2002 A 1 HETATM 7 C CD2 9NF . . . D 2 6.939 -11.693 6.948 1 68.8 ? CD2 9NF 2002 A 1 HETATM 8 C CE1 9NF . . . D 2 5.794 -13.399 8.906 1 68.83 ? CE1 9NF 2002 A 1 HETATM 9 C CE2 9NF . . . D 2 7.683 -12.796 7.459 1 69.54 ? CE2 9NF 2002 A 1 HETATM 10 C CZ 9NF . . . D 2 7.105 -13.649 8.442 1 69.16 ? CZ 9NF 2002 A 1 HETATM 11 S S1 9NF . . . D 2 5.214 -11.998 3.393 1 71.41 ? S1 9NF 2002 A 1 HETATM 12 O O2 9NF . . . D 2 6.372 -11.981 2.531 1 71.59 ? O2 9NF 2002 A 1 HETATM 13 O O3 9NF . . . D 2 5.046 -13.192 4.22 1 70.07 ? O3 9NF 2002 A 1 HETATM 14 N N1 9NF . . . D 2 0.606 -9.454 -1.125 1 75.3 ? N1 9NF 2002 A 1 HETATM 15 C C1 9NF . . . D 2 3.671 -11.662 2.394 1 72.58 ? C1 9NF 2002 A 1 HETATM 16 C C2 9NF . . . D 2 2.552 -12.456 2.703 1 73.74 ? C2 9NF 2002 A 1 HETATM 17 C C3 9NF . . . D 2 1.28 -12.309 2.005 1 75.21 ? C3 9NF 2002 A 1 HETATM 18 C C4 9NF . . . D 2 1.129 -11.359 0.989 1 75.86 ? C4 9NF 2002 A 1 HETATM 19 C C5 9NF . . . D 2 2.207 -10.483 0.587 1 74.63 ? C5 9NF 2002 A 1 HETATM 20 C C6 9NF . . . D 2 3.562 -10.603 1.286 1 73.1 ? C6 9NF 2002 A 1 HETATM 21 C C7 9NF . . . D 2 4.601 -9.708 0.848 1 73.22 ? C7 9NF 2002 A 1 HETATM 22 C C8 9NF . . . D 2 4.376 -8.749 -0.194 1 75.2 ? C8 9NF 2002 A 1 HETATM 23 C C9 9NF . . . D 2 3.064 -8.634 -0.867 1 75.4 ? C9 9NF 2002 A 1 HETATM 24 C C10 9NF . . . D 2 1.953 -9.5 -0.496 1 75.27 ? C10 9NF 2002 A 1 HETATM 25 C C11 9NF . . . D 2 -0.252 -8.366 -0.614 1 77.32 ? C11 9NF 2002 A 1 HETATM 26 C C12 9NF . . . D 2 0.635 -9.253 -2.602 1 76.59 ? C12 9NF 2002 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #