data_2XWN
#
_model_server_result.job_id            QnAxWrjgK3jWnPA58_A3Ig 
_model_server_result.datetime_utc      '2024-11-16 00:52:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xwn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    2XWN 
#
_exptl.entry_id    2XWN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              483.156 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2XWN 
_cell.length_a            44.06 
_cell.length_b            82.25 
_cell.length_c            133.24 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XWN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C MG MG . A MG 300 1_555 D O1A CTP . A CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc2 C MG MG . A MG 300 1_555 D O1B CTP . A CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc3 C MG MG . A MG 300 1_555 D O1G CTP . A CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? 
metalc ? metalc4 E MG MG . B MG 300 1_555 F O1B CTP . B CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc5 E MG MG . B MG 300 1_555 F O1G CTP . B CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? 
metalc ? metalc6 E MG MG . B MG 300 1_555 F O1A CTP . B CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? 
#
_chem_comp.formula           'C9 H16 N3 O14 P3' 
_chem_comp.formula_weight    483.156 
_chem_comp.id                CTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 CTP sing 70 n n 
N1 C6 CTP sing 71 n n 
N1 C1' CTP sing 72 n n 
C2 N3 CTP sing 73 n n 
C2 O2 CTP doub 74 n n 
N3 C4 CTP doub 75 n n 
C4 C5 CTP sing 76 n n 
C4 N4 CTP sing 77 n n 
C5 C6 CTP doub 78 n n 
C5 H5 CTP sing 79 n n 
C6 H6 CTP sing 80 n n 
N4 HN41 CTP sing 81 n n 
N4 HN42 CTP sing 82 n n 
C1' C2' CTP sing 83 n n 
C1' O4' CTP sing 84 n n 
C1' H1' CTP sing 85 n n 
C2' O2' CTP sing 86 n n 
C2' C3' CTP sing 87 n n 
C2' H2' CTP sing 88 n n 
O2' HO2' CTP sing 89 n n 
C3' C4' CTP sing 90 n n 
C3' O3' CTP sing 91 n n 
C3' H3' CTP sing 92 n n 
C4' O4' CTP sing 93 n n 
C4' C5' CTP sing 94 n n 
C4' H4' CTP sing 95 n n 
O3' HO3' CTP sing 96 n n 
C5' O5' CTP sing 97 n n 
C5' "H5'1" CTP sing 98 n n 
C5' "H5'2" CTP sing 99 n n 
O5' PA CTP sing 100 n n 
PA O1A CTP doub 101 n n 
PA O2A CTP sing 102 n n 
PA O3A CTP sing 103 n n 
O2A HOA2 CTP sing 104 n n 
O3A PB CTP sing 105 n n 
PB O1B CTP doub 106 n n 
PB O2B CTP sing 107 n n 
PB O3B CTP sing 108 n n 
O2B HOB2 CTP sing 109 n n 
O3B PG CTP sing 110 n n 
PG O1G CTP doub 111 n n 
PG O2G CTP sing 112 n n 
PG O3G CTP sing 113 n n 
O2G HOG2 CTP sing 114 n n 
O3G HOG3 CTP sing 115 n n 
#
_atom_sites.entry_id                     2XWN 
_atom_sites.fract_transf_matrix[1][1]    0.022696 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012158 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 300 300 MG MG . 
D 3 CTP A 1 301 301 CTP CTP . 
E 2 MG B 1 300 300 MG MG . 
F 3 CTP B 1 301 301 CTP CTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CTP . . . D 3 24.727 0.559 10.296 1 18.19 ? N1 CTP 301 A 1 
HETATM 2 C C2 CTP . . . D 3 25.177 0.449 8.966 1 18.22 ? C2 CTP 301 A 1 
HETATM 3 N N3 CTP . . . D 3 26.499 0.492 8.688 1 17.91 ? N3 CTP 301 A 1 
HETATM 4 C C4 CTP . . . D 3 27.395 0.638 9.688 1 18.4 ? C4 CTP 301 A 1 
HETATM 5 C C5 CTP . . . D 3 26.959 0.744 11.006 1 18.69 ? C5 CTP 301 A 1 
HETATM 6 C C6 CTP . . . D 3 25.599 0.701 11.295 1 18.04 ? C6 CTP 301 A 1 
HETATM 7 O O2 CTP . . . D 3 24.34 0.31 8.043 1 18.44 ? O2 CTP 301 A 1 
HETATM 8 N N4 CTP . . . D 3 28.722 0.681 9.414 1 18.31 ? N4 CTP 301 A 1 
HETATM 9 C C1' CTP . . . D 3 23.289 0.487 10.546 1 18.87 ? C1' CTP 301 A 1 
HETATM 10 C C2' CTP . . . D 3 22.98 -0.722 11.407 1 19.03 ? C2' CTP 301 A 1 
HETATM 11 O O2' CTP . . . D 3 22.938 -1.935 10.66 1 18.54 ? O2' CTP 301 A 1 
HETATM 12 C C3' CTP . . . D 3 21.665 -0.351 12.063 1 19.32 ? C3' CTP 301 A 1 
HETATM 13 C C4' CTP . . . D 3 21.695 1.172 12.102 1 19.58 ? C4' CTP 301 A 1 
HETATM 14 O O4' CTP . . . D 3 22.801 1.593 11.302 1 19.62 ? O4' CTP 301 A 1 
HETATM 15 O O3' CTP . . . D 3 20.542 -0.849 11.319 1 19.47 ? O3' CTP 301 A 1 
HETATM 16 C C5' CTP . . . D 3 21.937 1.683 13.506 1 20.93 ? C5' CTP 301 A 1 
HETATM 17 O O5' CTP . . . D 3 23.216 1.221 13.95 1 22.58 ? O5' CTP 301 A 1 
HETATM 18 P PA CTP . . . D 3 23.355 0.323 15.282 1 23.19 ? PA CTP 301 A 1 
HETATM 19 O O1A CTP . . . D 3 24.572 0.799 16.047 1 23.2 ? O1A CTP 301 A 1 
HETATM 20 O O2A CTP . . . D 3 22.004 0.263 15.951 1 24.45 ? O2A CTP 301 A 1 
HETATM 21 O O3A CTP . . . D 3 23.635 -1.134 14.678 1 22.07 ? O3A CTP 301 A 1 
HETATM 22 P PB CTP . . . D 3 25.111 -1.771 14.696 1 21.99 ? PB CTP 301 A 1 
HETATM 23 O O1B CTP . . . D 3 26.155 -0.699 14.526 1 21.69 ? O1B CTP 301 A 1 
HETATM 24 O O2B CTP . . . D 3 25.083 -2.971 13.769 1 22.3 ? O2B CTP 301 A 1 
HETATM 25 O O3B CTP . . . D 3 25.11 -2.268 16.214 1 22.04 ? O3B CTP 301 A 1 
HETATM 26 P PG CTP . . . D 3 26.386 -2.133 17.166 1 21.82 ? PG CTP 301 A 1 
HETATM 27 O O1G CTP . . . D 3 26.683 -0.649 17.199 1 23.09 ? O1G CTP 301 A 1 
HETATM 28 O O2G CTP . . . D 3 27.459 -2.948 16.504 1 21.45 ? O2G CTP 301 A 1 
HETATM 29 O O3G CTP . . . D 3 25.82 -2.724 18.436 1 22.4 ? O3G CTP 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           29 
#