data_2XWN # _model_server_result.job_id cFVaM6hHdpGsfSuR29ewbA _model_server_result.datetime_utc '2024-11-16 00:25:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xwn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 2XWN # _exptl.entry_id 2XWN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XWN _cell.length_a 44.06 _cell.length_b 82.25 _cell.length_c 133.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XWN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 300 1_555 D O1A CTP . A CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 C MG MG . A MG 300 1_555 D O1B CTP . A CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc3 C MG MG . A MG 300 1_555 D O1G CTP . A CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc4 E MG MG . B MG 300 1_555 F O1B CTP . B CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc5 E MG MG . B MG 300 1_555 F O1G CTP . B CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc6 E MG MG . B MG 300 1_555 F O1A CTP . B CTP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? # _chem_comp.formula 'C9 H16 N3 O14 P3' _chem_comp.formula_weight 483.156 _chem_comp.id CTP _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CTP sing 70 n n N1 C6 CTP sing 71 n n N1 C1' CTP sing 72 n n C2 N3 CTP sing 73 n n C2 O2 CTP doub 74 n n N3 C4 CTP doub 75 n n C4 C5 CTP sing 76 n n C4 N4 CTP sing 77 n n C5 C6 CTP doub 78 n n C5 H5 CTP sing 79 n n C6 H6 CTP sing 80 n n N4 HN41 CTP sing 81 n n N4 HN42 CTP sing 82 n n C1' C2' CTP sing 83 n n C1' O4' CTP sing 84 n n C1' H1' CTP sing 85 n n C2' O2' CTP sing 86 n n C2' C3' CTP sing 87 n n C2' H2' CTP sing 88 n n O2' HO2' CTP sing 89 n n C3' C4' CTP sing 90 n n C3' O3' CTP sing 91 n n C3' H3' CTP sing 92 n n C4' O4' CTP sing 93 n n C4' C5' CTP sing 94 n n C4' H4' CTP sing 95 n n O3' HO3' CTP sing 96 n n C5' O5' CTP sing 97 n n C5' "H5'1" CTP sing 98 n n C5' "H5'2" CTP sing 99 n n O5' PA CTP sing 100 n n PA O1A CTP doub 101 n n PA O2A CTP sing 102 n n PA O3A CTP sing 103 n n O2A HOA2 CTP sing 104 n n O3A PB CTP sing 105 n n PB O1B CTP doub 106 n n PB O2B CTP sing 107 n n PB O3B CTP sing 108 n n O2B HOB2 CTP sing 109 n n O3B PG CTP sing 110 n n PG O1G CTP doub 111 n n PG O2G CTP sing 112 n n PG O3G CTP sing 113 n n O2G HOG2 CTP sing 114 n n O3G HOG3 CTP sing 115 n n # _atom_sites.entry_id 2XWN _atom_sites.fract_transf_matrix[1][1] 0.022696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 300 300 MG MG . D 3 CTP A 1 301 301 CTP CTP . E 2 MG B 1 300 300 MG MG . F 3 CTP B 1 301 301 CTP CTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CTP . . . F 3 3.867 9.929 41.632 1 41.32 ? N1 CTP 301 B 1 HETATM 2 C C2 CTP . . . F 3 3.421 10.292 42.933 1 40.52 ? C2 CTP 301 B 1 HETATM 3 N N3 CTP . . . F 3 2.542 11.31 43.087 1 40.15 ? N3 CTP 301 B 1 HETATM 4 C C4 CTP . . . F 3 2.077 11.979 42 1 41.07 ? C4 CTP 301 B 1 HETATM 5 C C5 CTP . . . F 3 2.502 11.634 40.711 1 40.77 ? C5 CTP 301 B 1 HETATM 6 C C6 CTP . . . F 3 3.41 10.589 40.547 1 40.46 ? C6 CTP 301 B 1 HETATM 7 O O2 CTP . . . F 3 3.829 9.68 43.945 1 39.12 ? O2 CTP 301 B 1 HETATM 8 N N4 CTP . . . F 3 1.195 12.992 42.17 1 38.43 ? N4 CTP 301 B 1 HETATM 9 C C1' CTP . . . F 3 4.798 8.804 41.491 1 41.37 ? C1' CTP 301 B 1 HETATM 10 C C2' CTP . . . F 3 4.176 7.75 40.586 1 42.24 ? C2' CTP 301 B 1 HETATM 11 O O2' CTP . . . F 3 3.161 6.966 41.227 1 41.69 ? O2' CTP 301 B 1 HETATM 12 C C3' CTP . . . F 3 5.383 6.963 40.1 1 44.07 ? C3' CTP 301 B 1 HETATM 13 C C4' CTP . . . F 3 6.511 7.995 40.115 1 43.21 ? C4' CTP 301 B 1 HETATM 14 O O4' CTP . . . F 3 6.055 9.122 40.879 1 42.8 ? O4' CTP 301 B 1 HETATM 15 O O3' CTP . . . F 3 5.69 5.855 40.963 1 42.71 ? O3' CTP 301 B 1 HETATM 16 C C5' CTP . . . F 3 6.881 8.437 38.701 1 44.03 ? C5' CTP 301 B 1 HETATM 17 O O5' CTP . . . F 3 5.774 9.108 38.087 1 45.26 ? O5' CTP 301 B 1 HETATM 18 P PA CTP . . . F 3 5.07 8.553 36.743 1 45.27 ? PA CTP 301 B 1 HETATM 19 O O1A CTP . . . F 3 4.741 9.744 35.873 1 45.12 ? O1A CTP 301 B 1 HETATM 20 O O2A CTP . . . F 3 5.919 7.432 36.194 1 45.52 ? O2A CTP 301 B 1 HETATM 21 O O3A CTP . . . F 3 3.693 7.901 37.279 1 45.37 ? O3A CTP 301 B 1 HETATM 22 P PB CTP . . . F 3 2.24 8.586 37.092 1 45.63 ? PB CTP 301 B 1 HETATM 23 O O1B CTP . . . F 3 2.327 10.071 37.372 1 44.33 ? O1B CTP 301 B 1 HETATM 24 O O2B CTP . . . F 3 1.254 7.741 37.856 1 46.7 ? O2B CTP 301 B 1 HETATM 25 O O3B CTP . . . F 3 1.997 8.308 35.523 1 47.65 ? O3B CTP 301 B 1 HETATM 26 P PG CTP . . . F 3 1.343 9.36 34.489 1 46 ? PG CTP 301 B 1 HETATM 27 O O1G CTP . . . F 3 2.285 10.545 34.479 1 40.54 ? O1G CTP 301 B 1 HETATM 28 O O2G CTP . . . F 3 -0.028 9.632 35.07 1 44.33 ? O2G CTP 301 B 1 HETATM 29 O O3G CTP . . . F 3 1.327 8.544 33.214 1 43.85 ? O3G CTP 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #