data_2XX5 # _model_server_result.job_id LDu2567izeGAkI_syW0_UQ _model_server_result.datetime_utc '2025-01-12 11:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1215}' # _entry.id 2XX5 # _exptl.entry_id 2XX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 470.945 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5E,10R)-N-BENZYL-13-CHLORO-14,16-DIHYDROXY-1,11-DIOXO-1,2,3,4,7,8,9,10,11,12-DECAHYDRO-2-BENZAZACYCLOTETRADECINE-10-CARBOXAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XX5 _cell.length_a 74.16 _cell.length_b 74.16 _cell.length_c 110.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 74.16 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H27 Cl N2 O5' _chem_comp.formula_weight 470.945 _chem_comp.id 13N _chem_comp.mon_nstd_flag . _chem_comp.name (5E,10R)-N-BENZYL-13-CHLORO-14,16-DIHYDROXY-1,11-DIOXO-1,2,3,4,7,8,9,10,11,12-DECAHYDRO-2-BENZAZACYCLOTETRADECINE-10-CARBOXAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAL CAJ 13N sing 1 n y CAL CBC 13N doub 2 n y CAJ CAI 13N doub 3 n y CAI CAK 13N sing 4 n y CAK CAM 13N doub 5 n y CAM CBC 13N sing 6 n y CBC CAT 13N sing 7 n n CAT NAW 13N sing 8 n n NAW CAZ 13N sing 9 n n CAZ OAC 13N doub 10 n n CAZ CBG 13N sing 11 n n CBG CAS 13N sing 12 n n CBG CAX 13N sing 13 n n CAS CAQ 13N sing 14 n n CAQ CAO 13N sing 15 n n CAO CAG 13N sing 16 n n CAG CAH 13N doub 17 n n CAH CAP 13N sing 18 n n CAP CAR 13N sing 19 n n CAR NAV 13N sing 20 n n NAV CAY 13N sing 21 n n CAY OAB 13N doub 22 n n CAY CBF 13N sing 23 n n CBF CBB 13N sing 24 n y CBF CBE 13N doub 25 n y CBB OAE 13N sing 26 n n CBB CAN 13N doub 27 n y CAN CBA 13N sing 28 n y CBA OAD 13N sing 29 n n CBA CBD 13N doub 30 n y CBD CL1 13N sing 31 n n CBD CBE 13N sing 32 e y CBE CAU 13N sing 33 n n CAU CAX 13N sing 34 n n CAX OAA 13N doub 35 n n CAL HAL 13N sing 36 n n CAJ HAJ 13N sing 37 n n CAI HAI 13N sing 38 n n CAK HAK 13N sing 39 n n CAM HAM 13N sing 40 n n CAT HAT1 13N sing 41 n n CAT HAT2 13N sing 42 n n NAW HAW 13N sing 43 n n CBG HBG 13N sing 44 n n CAS HAS1 13N sing 45 n n CAS HAS2 13N sing 46 n n CAQ HAQ1 13N sing 47 n n CAQ HAQ2 13N sing 48 n n CAO HAO1 13N sing 49 n n CAO HAO2 13N sing 50 n n CAG HAG 13N sing 51 n n CAH HAH 13N sing 52 n n CAP HAP1 13N sing 53 n n CAP HAP2 13N sing 54 n n CAR HAR1 13N sing 55 n n CAR HAR2 13N sing 56 n n NAV HAV 13N sing 57 n n OAE HAE 13N sing 58 n n CAN HAN 13N sing 59 n n OAD HAD 13N sing 60 n n CAU HAU1 13N sing 61 n n CAU HAU2 13N sing 62 n n # _atom_sites.entry_id 2XX5 _atom_sites.fract_transf_matrix[1][1] 0.013484 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 13N A 1 1215 1215 13N 13N . C 3 GOL A 1 1216 1216 GOL GOL . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . D 4 HOH A 105 2105 2105 HOH HOH . D 4 HOH A 106 2106 2106 HOH HOH . D 4 HOH A 107 2107 2107 HOH HOH . D 4 HOH A 108 2108 2108 HOH HOH . D 4 HOH A 109 2109 2109 HOH HOH . D 4 HOH A 110 2110 2110 HOH HOH . D 4 HOH A 111 2111 2111 HOH HOH . D 4 HOH A 112 2112 2112 HOH HOH . D 4 HOH A 113 2113 2113 HOH HOH . D 4 HOH A 114 2114 2114 HOH HOH . D 4 HOH A 115 2115 2115 HOH HOH . D 4 HOH A 116 2116 2116 HOH HOH . D 4 HOH A 117 2117 2117 HOH HOH . D 4 HOH A 118 2118 2118 HOH HOH . D 4 HOH A 119 2119 2119 HOH HOH . D 4 HOH A 120 2120 2120 HOH HOH . D 4 HOH A 121 2121 2121 HOH HOH . D 4 HOH A 122 2122 2122 HOH HOH . D 4 HOH A 123 2123 2123 HOH HOH . D 4 HOH A 124 2124 2124 HOH HOH . D 4 HOH A 125 2125 2125 HOH HOH . D 4 HOH A 126 2126 2126 HOH HOH . D 4 HOH A 127 2127 2127 HOH HOH . D 4 HOH A 128 2128 2128 HOH HOH . D 4 HOH A 129 2129 2129 HOH HOH . D 4 HOH A 130 2130 2130 HOH HOH . D 4 HOH A 131 2131 2131 HOH HOH . D 4 HOH A 132 2132 2132 HOH HOH . D 4 HOH A 133 2133 2133 HOH HOH . D 4 HOH A 134 2134 2134 HOH HOH . D 4 HOH A 135 2135 2135 HOH HOH . D 4 HOH A 136 2136 2136 HOH HOH . D 4 HOH A 137 2137 2137 HOH HOH . D 4 HOH A 138 2138 2138 HOH HOH . D 4 HOH A 139 2139 2139 HOH HOH . D 4 HOH A 140 2140 2140 HOH HOH . D 4 HOH A 141 2141 2141 HOH HOH . D 4 HOH A 142 2142 2142 HOH HOH . D 4 HOH A 143 2143 2143 HOH HOH . D 4 HOH A 144 2144 2144 HOH HOH . D 4 HOH A 145 2145 2145 HOH HOH . D 4 HOH A 146 2146 2146 HOH HOH . D 4 HOH A 147 2147 2147 HOH HOH . D 4 HOH A 148 2148 2148 HOH HOH . D 4 HOH A 149 2149 2149 HOH HOH . D 4 HOH A 150 2150 2150 HOH HOH . D 4 HOH A 151 2151 2151 HOH HOH . D 4 HOH A 152 2152 2152 HOH HOH . D 4 HOH A 153 2153 2153 HOH HOH . D 4 HOH A 154 2154 2154 HOH HOH . D 4 HOH A 155 2155 2155 HOH HOH . D 4 HOH A 156 2156 2156 HOH HOH . D 4 HOH A 157 2157 2157 HOH HOH . D 4 HOH A 158 2158 2158 HOH HOH . D 4 HOH A 159 2159 2159 HOH HOH . D 4 HOH A 160 2160 2160 HOH HOH . D 4 HOH A 161 2161 2161 HOH HOH . D 4 HOH A 162 2162 2162 HOH HOH . D 4 HOH A 163 2163 2163 HOH HOH . D 4 HOH A 164 2164 2164 HOH HOH . D 4 HOH A 165 2165 2165 HOH HOH . D 4 HOH A 166 2166 2166 HOH HOH . D 4 HOH A 167 2167 2167 HOH HOH . D 4 HOH A 168 2168 2168 HOH HOH . D 4 HOH A 169 2169 2169 HOH HOH . D 4 HOH A 170 2170 2170 HOH HOH . D 4 HOH A 171 2171 2171 HOH HOH . D 4 HOH A 172 2172 2172 HOH HOH . D 4 HOH A 173 2173 2173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAL 13N . . . B 2 16.605 -2.254 0.82 1 45.95 ? CAL 13N 1215 A 1 HETATM 2 C CAJ 13N . . . B 2 17.605 -2.259 -0.112 1 41.65 ? CAJ 13N 1215 A 1 HETATM 3 C CAI 13N . . . B 2 17.812 -1.166 -0.869 1 36.13 ? CAI 13N 1215 A 1 HETATM 4 C CAK 13N . . . B 2 16.996 -0.078 -0.697 1 47.18 ? CAK 13N 1215 A 1 HETATM 5 C CAM 13N . . . B 2 16.007 -0.057 0.225 1 37.34 ? CAM 13N 1215 A 1 HETATM 6 C CBC 13N . . . B 2 15.807 -1.158 0.997 1 45.76 ? CBC 13N 1215 A 1 HETATM 7 C CAT 13N . . . B 2 14.704 -1.193 2.03 1 53.45 ? CAT 13N 1215 A 1 HETATM 8 N NAW 13N . . . B 2 15.002 -0.286 3.112 1 53.26 ? NAW 13N 1215 A 1 HETATM 9 C CAZ 13N . . . B 2 14.379 0.851 3.277 1 52.77 ? CAZ 13N 1215 A 1 HETATM 10 O OAC 13N . . . B 2 13.57 1.328 2.509 1 58.6 ? OAC 13N 1215 A 1 HETATM 11 C CBG 13N . . . B 2 14.835 1.575 4.484 1 42.4 ? CBG 13N 1215 A 1 HETATM 12 C CAS 13N . . . B 2 13.658 2.22 5.159 1 46.57 ? CAS 13N 1215 A 1 HETATM 13 C CAQ 13N . . . B 2 13.03 1.224 6.09 1 47.08 ? CAQ 13N 1215 A 1 HETATM 14 C CAO 13N . . . B 2 13.756 1.139 7.388 1 43.56 ? CAO 13N 1215 A 1 HETATM 15 C CAG 13N . . . B 2 15.088 0.837 7.249 1 48.95 ? CAG 13N 1215 A 1 HETATM 16 C CAH 13N . . . B 2 15.876 1.092 8.341 1 40.21 ? CAH 13N 1215 A 1 HETATM 17 C CAP 13N . . . B 2 17.22 0.851 8.349 1 44.88 ? CAP 13N 1215 A 1 HETATM 18 C CAR 13N . . . B 2 18.024 2.077 8.05 1 33.88 ? CAR 13N 1215 A 1 HETATM 19 N NAV 13N . . . B 2 17.918 2.496 6.681 1 33.82 ? NAV 13N 1215 A 1 HETATM 20 C CAY 13N . . . B 2 19.097 2.6 5.858 1 32.07 ? CAY 13N 1215 A 1 HETATM 21 O OAB 13N . . . B 2 20.1 1.996 6.109 1 30.97 ? OAB 13N 1215 A 1 HETATM 22 C CBF 13N . . . B 2 19.054 3.509 4.67 1 27.92 ? CBF 13N 1215 A 1 HETATM 23 C CBB 13N . . . B 2 19.934 4.566 4.685 1 26.49 ? CBB 13N 1215 A 1 HETATM 24 O OAE 13N . . . B 2 20.707 4.719 5.728 1 22.83 ? OAE 13N 1215 A 1 HETATM 25 C CAN 13N . . . B 2 19.968 5.434 3.642 1 26.9 ? CAN 13N 1215 A 1 HETATM 26 C CBA 13N . . . B 2 19.135 5.235 2.592 1 26.96 ? CBA 13N 1215 A 1 HETATM 27 O OAD 13N . . . B 2 19.17 6.063 1.584 1 25.24 ? OAD 13N 1215 A 1 HETATM 28 C CBD 13N . . . B 2 18.27 4.16 2.574 1 28.32 ? CBD 13N 1215 A 1 HETATM 29 CL CL1 13N . . . B 2 17.265 3.973 1.231 1 33.68 ? CL1 13N 1215 A 1 HETATM 30 C CBE 13N . . . B 2 18.216 3.279 3.621 1 27.02 ? CBE 13N 1215 A 1 HETATM 31 C CAU 13N . . . B 2 17.254 2.112 3.626 1 34.01 ? CAU 13N 1215 A 1 HETATM 32 C CAX 13N . . . B 2 15.843 2.582 4.004 1 39.87 ? CAX 13N 1215 A 1 HETATM 33 O OAA 13N . . . B 2 15.503 3.724 3.883 1 42.15 ? OAA 13N 1215 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #