data_2XXY
#
_model_server_result.job_id            DUVE99sZKND-yrRv1V_f_Q 
_model_server_result.datetime_utc      '2024-11-06 12:36:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":900}' 
#
_entry.id    2XXY 
#
_exptl.entry_id    2XXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              213.23 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2XXY 
_cell.length_a            85.665 
_cell.length_b            99.442 
_cell.length_c            124.627 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C10 H15 N O4' 
_chem_comp.formula_weight    213.23 
_chem_comp.id                KAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     KAINATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CD KAI sing 171 n n 
N CA KAI sing 172 n n 
N HN1 KAI sing 173 n n 
CD CG KAI sing 174 n n 
CD HD1 KAI sing 175 n n 
CD HD2 KAI sing 176 n n 
CD1 CG2 KAI doub 177 n n 
CD1 HD11 KAI sing 178 n n 
CD1 HD12 KAI sing 179 n n 
CD2 CG2 KAI sing 180 n n 
CD2 HD21 KAI sing 181 n n 
CD2 HD22 KAI sing 182 n n 
CD2 HD23 KAI sing 183 n n 
CA CB KAI sing 184 n n 
CA C KAI sing 185 n n 
CA HA KAI sing 186 n n 
CB CB1 KAI sing 187 n n 
CB CG KAI sing 188 n n 
CB HB KAI sing 189 n n 
CB1 CG1 KAI sing 190 n n 
CB1 HB11 KAI sing 191 n n 
CB1 HB12 KAI sing 192 n n 
CG CG2 KAI sing 193 n n 
CG HG KAI sing 194 n n 
CG1 OD1 KAI sing 195 n n 
CG1 OD2 KAI doub 196 n n 
C O KAI doub 197 n n 
C OXT KAI sing 198 n n 
OD1 HOD1 KAI sing 199 n n 
OXT HXT KAI sing 200 n n 
#
_atom_sites.entry_id                     2XXY 
_atom_sites.fract_transf_matrix[1][1]    0.011673 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010056 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008024 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 KAI A 1 900 900 KAI KAI . 
F 2 KAI B 1 900 900 KAI KAI . 
G 2 KAI C 1 900 900 KAI KAI . 
H 2 KAI D 1 900 900 KAI KAI . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N KAI . . . F 2 -14.493 -8.149 4.917 1 40.73 ? N KAI 900 B 1 
HETATM 2 C CD KAI . . . F 2 -13.729 -8.768 6.022 1 41.62 ? CD KAI 900 B 1 
HETATM 3 C CD1 KAI . . . F 2 -13.036 -10.635 7.971 1 44.61 ? CD1 KAI 900 B 1 
HETATM 4 C CD2 KAI . . . F 2 -14.81 -9.835 9.538 1 45.74 ? CD2 KAI 900 B 1 
HETATM 5 C CA KAI . . . F 2 -15.869 -7.955 5.371 1 39.86 ? CA KAI 900 B 1 
HETATM 6 C CB KAI . . . F 2 -16.061 -8.831 6.596 1 42.42 ? CB KAI 900 B 1 
HETATM 7 C CB1 KAI . . . F 2 -16.407 -10.265 6.248 1 45.97 ? CB1 KAI 900 B 1 
HETATM 8 C CG KAI . . . F 2 -14.678 -8.861 7.215 1 42.17 ? CG KAI 900 B 1 
HETATM 9 C CG1 KAI . . . F 2 -17.836 -10.482 5.839 1 43.92 ? CG1 KAI 900 B 1 
HETATM 10 C CG2 KAI . . . F 2 -14.455 -10.1 8.083 1 45 ? CG2 KAI 900 B 1 
HETATM 11 C C KAI . . . F 2 -16.011 -6.506 5.725 1 41.47 ? C KAI 900 B 1 
HETATM 12 O O KAI . . . F 2 -15.31 -5.642 5.176 1 39.87 ? O KAI 900 B 1 
HETATM 13 O OD1 KAI . . . F 2 -18.061 -11.456 5.089 1 42.59 ? OD1 KAI 900 B 1 
HETATM 14 O OD2 KAI . . . F 2 -18.725 -9.729 6.283 1 46.05 ? OD2 KAI 900 B 1 
HETATM 15 O OXT KAI . . . F 2 -16.831 -6.163 6.584 1 44.06 ? OXT KAI 900 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           15 
#