data_2XY3
#
_model_server_result.job_id            2FdIpFTdeeYcodwb0bYgDA 
_model_server_result.datetime_utc      '2024-11-17 12:33:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1130}' 
#
_entry.id    2XY3 
#
_exptl.entry_id    2XY3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2XY3 
_cell.length_a            98.474 
_cell.length_b            98.4 
_cell.length_c            97.993 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,P,Q,R 1 1 
D,E,F,K,L,M,N,O,S,T,U 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 M N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I O1A DUP . C DUP 1129 1_555 J MG MG . C MG 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc2 I O1B DUP . C DUP 1129 1_555 J MG MG . C MG 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc3 I O2G DUP . C DUP 1129 1_555 J MG MG . C MG 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc4 L O1A DUP . E DUP 1130 1_555 M MG MG . E MG 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc5 L O1B DUP . E DUP 1130 1_555 M MG MG . E MG 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc6 L O2G DUP . E DUP 1130 1_555 M MG MG . E MG 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc7 N O1B DUP . F DUP 1129 1_555 O MG MG . F MG 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc8 N O2G DUP . F DUP 1129 1_555 O MG MG . F MG 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc9 N O1A DUP . F DUP 1129 1_555 O MG MG . F MG 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2XY3 
_atom_sites.fract_transf_matrix[1][1]    0.010155 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010205 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 DUP A 1 1130 1130 DUP DUP . 
H 2 DUP B 1 1129 1129 DUP DUP . 
I 2 DUP C 1 1129 1129 DUP DUP . 
J 3 MG C 1 1130 1130 MG MG . 
K 2 DUP D 1 1130 1130 DUP DUP . 
L 2 DUP E 1 1130 1130 DUP DUP . 
M 3 MG E 1 1131 1131 MG MG . 
N 2 DUP F 1 1129 1129 DUP DUP . 
O 3 MG F 1 1130 1130 MG MG . 
P 4 HOH A 1 2001 2001 HOH HOH . 
P 4 HOH A 2 2002 2002 HOH HOH . 
P 4 HOH A 3 2003 2003 HOH HOH . 
P 4 HOH A 4 2004 2004 HOH HOH . 
P 4 HOH A 5 2005 2005 HOH HOH . 
P 4 HOH A 6 2006 2006 HOH HOH . 
P 4 HOH A 7 2007 2007 HOH HOH . 
P 4 HOH A 8 2008 2008 HOH HOH . 
P 4 HOH A 9 2009 2009 HOH HOH . 
P 4 HOH A 10 2010 2010 HOH HOH . 
P 4 HOH A 11 2011 2011 HOH HOH . 
P 4 HOH A 12 2012 2012 HOH HOH . 
P 4 HOH A 13 2013 2013 HOH HOH . 
P 4 HOH A 14 2014 2014 HOH HOH . 
P 4 HOH A 15 2015 2015 HOH HOH . 
P 4 HOH A 16 2016 2016 HOH HOH . 
P 4 HOH A 17 2017 2017 HOH HOH . 
P 4 HOH A 18 2018 2018 HOH HOH . 
P 4 HOH A 19 2019 2019 HOH HOH . 
P 4 HOH A 20 2020 2020 HOH HOH . 
P 4 HOH A 21 2021 2021 HOH HOH . 
P 4 HOH A 22 2022 2022 HOH HOH . 
Q 4 HOH B 1 2001 2001 HOH HOH . 
Q 4 HOH B 2 2002 2002 HOH HOH . 
Q 4 HOH B 3 2003 2003 HOH HOH . 
Q 4 HOH B 4 2004 2004 HOH HOH . 
Q 4 HOH B 5 2005 2005 HOH HOH . 
Q 4 HOH B 6 2006 2006 HOH HOH . 
Q 4 HOH B 7 2007 2007 HOH HOH . 
Q 4 HOH B 8 2008 2008 HOH HOH . 
Q 4 HOH B 9 2009 2009 HOH HOH . 
Q 4 HOH B 10 2010 2010 HOH HOH . 
Q 4 HOH B 11 2011 2011 HOH HOH . 
Q 4 HOH B 12 2012 2012 HOH HOH . 
R 4 HOH C 1 2001 2001 HOH HOH . 
R 4 HOH C 2 2002 2002 HOH HOH . 
R 4 HOH C 3 2003 2003 HOH HOH . 
R 4 HOH C 4 2004 2004 HOH HOH . 
R 4 HOH C 5 2005 2005 HOH HOH . 
R 4 HOH C 6 2006 2006 HOH HOH . 
R 4 HOH C 7 2007 2007 HOH HOH . 
R 4 HOH C 8 2008 2008 HOH HOH . 
R 4 HOH C 9 2009 2009 HOH HOH . 
R 4 HOH C 10 2010 2010 HOH HOH . 
R 4 HOH C 11 2011 2011 HOH HOH . 
R 4 HOH C 12 2012 2012 HOH HOH . 
R 4 HOH C 13 2013 2013 HOH HOH . 
R 4 HOH C 14 2014 2014 HOH HOH . 
R 4 HOH C 15 2015 2015 HOH HOH . 
R 4 HOH C 16 2016 2016 HOH HOH . 
R 4 HOH C 17 2017 2017 HOH HOH . 
R 4 HOH C 18 2018 2018 HOH HOH . 
R 4 HOH C 19 2019 2019 HOH HOH . 
R 4 HOH C 20 2020 2020 HOH HOH . 
S 4 HOH D 1 2001 2001 HOH HOH . 
S 4 HOH D 2 2002 2002 HOH HOH . 
S 4 HOH D 3 2003 2003 HOH HOH . 
S 4 HOH D 4 2004 2004 HOH HOH . 
S 4 HOH D 5 2005 2005 HOH HOH . 
S 4 HOH D 6 2006 2006 HOH HOH . 
S 4 HOH D 7 2007 2007 HOH HOH . 
S 4 HOH D 8 2008 2008 HOH HOH . 
S 4 HOH D 9 2009 2009 HOH HOH . 
S 4 HOH D 10 2010 2010 HOH HOH . 
S 4 HOH D 11 2011 2011 HOH HOH . 
S 4 HOH D 12 2012 2012 HOH HOH . 
S 4 HOH D 13 2013 2013 HOH HOH . 
S 4 HOH D 14 2014 2014 HOH HOH . 
S 4 HOH D 15 2015 2015 HOH HOH . 
S 4 HOH D 16 2016 2016 HOH HOH . 
S 4 HOH D 17 2017 2017 HOH HOH . 
S 4 HOH D 18 2018 2018 HOH HOH . 
S 4 HOH D 19 2019 2019 HOH HOH . 
S 4 HOH D 20 2020 2020 HOH HOH . 
S 4 HOH D 21 2021 2021 HOH HOH . 
S 4 HOH D 22 2022 2022 HOH HOH . 
T 4 HOH E 1 2001 2001 HOH HOH . 
T 4 HOH E 2 2002 2002 HOH HOH . 
T 4 HOH E 3 2003 2003 HOH HOH . 
T 4 HOH E 4 2004 2004 HOH HOH . 
T 4 HOH E 5 2005 2005 HOH HOH . 
T 4 HOH E 6 2006 2006 HOH HOH . 
T 4 HOH E 7 2007 2007 HOH HOH . 
T 4 HOH E 8 2008 2008 HOH HOH . 
T 4 HOH E 9 2009 2009 HOH HOH . 
T 4 HOH E 10 2010 2010 HOH HOH . 
T 4 HOH E 11 2011 2011 HOH HOH . 
T 4 HOH E 12 2012 2012 HOH HOH . 
T 4 HOH E 13 2013 2013 HOH HOH . 
T 4 HOH E 14 2014 2014 HOH HOH . 
T 4 HOH E 15 2015 2015 HOH HOH . 
T 4 HOH E 16 2016 2016 HOH HOH . 
T 4 HOH E 17 2017 2017 HOH HOH . 
T 4 HOH E 18 2018 2018 HOH HOH . 
T 4 HOH E 19 2019 2019 HOH HOH . 
T 4 HOH E 20 2020 2020 HOH HOH . 
U 4 HOH F 1 2001 2001 HOH HOH . 
U 4 HOH F 2 2002 2002 HOH HOH . 
U 4 HOH F 3 2003 2003 HOH HOH . 
U 4 HOH F 4 2004 2004 HOH HOH . 
U 4 HOH F 5 2005 2005 HOH HOH . 
U 4 HOH F 6 2006 2006 HOH HOH . 
U 4 HOH F 7 2007 2007 HOH HOH . 
U 4 HOH F 8 2008 2008 HOH HOH . 
U 4 HOH F 9 2009 2009 HOH HOH . 
U 4 HOH F 10 2010 2010 HOH HOH . 
U 4 HOH F 11 2011 2011 HOH HOH . 
U 4 HOH F 12 2012 2012 HOH HOH . 
U 4 HOH F 13 2013 2013 HOH HOH . 
U 4 HOH F 14 2014 2014 HOH HOH . 
U 4 HOH F 15 2015 2015 HOH HOH . 
U 4 HOH F 16 2016 2016 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               6.632 
_atom_site.Cartn_y               14.503 
_atom_site.Cartn_z               -49.204 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        38.71 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           1130 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#