data_2XYN # _model_server_result.job_id BD3m9Oz1RR-yQ-ycVlhvMw _model_server_result.datetime_utc '2024-12-04 09:21:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xyn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":547}' # _entry.id 2XYN # _exptl.entry_id 2XYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.586 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2XYN _cell.length_a 170.5 _cell.length_b 170.5 _cell.length_c 100.651 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,N 1 1 B,H,I,J,O 2 1 C,K,L,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D NA NA . A NA 1 1_555 A O ILE 195 A ILE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc2 D NA NA . A NA 1 1_555 A O THR 198 A THR 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc3 D NA NA . A NA 1 1_555 N O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc4 A O ARG 265 A ARG 519 1_555 G NA NA . A NA 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc5 G NA NA . A NA 549 1_555 N O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'C23 H28 N8 O S' _chem_comp.formula_weight 464.586 _chem_comp.id VX6 _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 VX6 sing 376 n n N1 C6 VX6 sing 377 n n N1 C7 VX6 sing 378 n n C2 C3 VX6 sing 379 n n C2 H21 VX6 sing 380 n n C2 H22 VX6 sing 381 n n C3 N4 VX6 sing 382 n n C3 H31 VX6 sing 383 n n C3 H32 VX6 sing 384 n n N4 C5 VX6 sing 385 n n N4 C8 VX6 sing 386 n n C5 C6 VX6 sing 387 n n C5 H51 VX6 sing 388 n n C5 H52 VX6 sing 389 n n C6 H61 VX6 sing 390 n n C6 H62 VX6 sing 391 n n C7 H71 VX6 sing 392 n n C7 H72 VX6 sing 393 n n C7 H73 VX6 sing 394 n n C8 C9 VX6 sing 395 n y C8 N13 VX6 doub 396 n y C9 C10 VX6 doub 397 n y C9 H9 VX6 sing 398 n n C10 N11 VX6 sing 399 n y C10 N14 VX6 sing 400 n n N11 C12 VX6 doub 401 n y C12 N13 VX6 sing 402 n y C12 S23 VX6 sing 403 n n N14 C15 VX6 sing 404 n n N14 H14 VX6 sing 405 n n C15 C17 VX6 doub 406 n y C15 N20 VX6 sing 407 n y C17 C18 VX6 sing 408 n y C17 H17 VX6 sing 409 n n C18 N19 VX6 doub 410 n y C18 C21 VX6 sing 411 n n N19 N20 VX6 sing 412 n y N20 H20 VX6 sing 413 n n C21 H211 VX6 sing 414 n n C21 H212 VX6 sing 415 n n C21 H213 VX6 sing 416 n n S23 C24 VX6 sing 417 n n C24 C25 VX6 sing 418 n y C24 C29 VX6 doub 419 n y C25 C26 VX6 doub 420 n y C25 H25 VX6 sing 421 n n C26 C27 VX6 sing 422 n y C26 H26 VX6 sing 423 n n C27 C28 VX6 doub 424 n y C27 N30 VX6 sing 425 n n C28 C29 VX6 sing 426 n y C28 H28 VX6 sing 427 n n C29 H29 VX6 sing 428 n n N30 C31 VX6 sing 429 n n N30 H30 VX6 sing 430 n n C31 O32 VX6 doub 431 n n C31 C33 VX6 sing 432 n n C33 C34 VX6 sing 433 n n C33 C35 VX6 sing 434 n n C33 H33 VX6 sing 435 n n C34 C35 VX6 sing 436 n n C34 H341 VX6 sing 437 n n C34 H342 VX6 sing 438 n n C35 H351 VX6 sing 439 n n C35 H352 VX6 sing 440 n n # _atom_sites.entry_id 2XYN _atom_sites.fract_transf_matrix[1][1] 0.005865 _atom_sites.fract_transf_matrix[1][2] 0.003386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NA A 1 1 1 NA NA . E 3 VX6 A 1 547 547 VX6 VX6 . F 4 CL A 1 548 548 CL CL . G 2 NA A 1 549 549 NA NA . H 3 VX6 B 1 547 547 VX6 VX6 . I 3 VX6 B 1 548 548 VX6 VX6 . J 3 VX6 B 1 549 549 VX6 VX6 . K 3 VX6 C 1 547 547 VX6 VX6 . L 3 VX6 C 1 548 548 VX6 VX6 . M 3 VX6 C 1 549 549 VX6 VX6 . N 5 HOH A 1 2001 2001 HOH HOH . N 5 HOH A 2 2002 2002 HOH HOH . N 5 HOH A 3 2003 2003 HOH HOH . N 5 HOH A 4 2004 2004 HOH HOH . N 5 HOH A 5 2005 2005 HOH HOH . N 5 HOH A 6 2006 2006 HOH HOH . O 5 HOH B 1 2001 2001 HOH HOH . O 5 HOH B 2 2002 2002 HOH HOH . O 5 HOH B 3 2003 2003 HOH HOH . O 5 HOH B 4 2004 2004 HOH HOH . O 5 HOH B 5 2005 2005 HOH HOH . O 5 HOH B 6 2006 2006 HOH HOH . O 5 HOH B 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VX6 . . . E 3 -51.224 42.136 -4.828 1 77.54 ? N1 VX6 547 A 1 HETATM 2 C C2 VX6 . . . E 3 -51.758 42.211 -6.194 1 76.39 ? C2 VX6 547 A 1 HETATM 3 C C3 VX6 . . . E 3 -51.633 43.597 -6.823 1 75.57 ? C3 VX6 547 A 1 HETATM 4 N N4 VX6 . . . E 3 -51.976 44.677 -5.884 1 75.31 ? N4 VX6 547 A 1 HETATM 5 C C5 VX6 . . . E 3 -51.615 44.517 -4.457 1 75.98 ? C5 VX6 547 A 1 HETATM 6 C C6 VX6 . . . E 3 -51.947 43.106 -3.983 1 76.99 ? C6 VX6 547 A 1 HETATM 7 C C7 VX6 . . . E 3 -51.429 40.762 -4.295 1 76.45 ? C7 VX6 547 A 1 HETATM 8 C C8 VX6 . . . E 3 -52.456 45.927 -6.359 1 74.83 ? C8 VX6 547 A 1 HETATM 9 C C9 VX6 . . . E 3 -52.203 47.07 -5.597 1 74.57 ? C9 VX6 547 A 1 HETATM 10 C C10 VX6 . . . E 3 -52.651 48.306 -6.036 1 74.69 ? C10 VX6 547 A 1 HETATM 11 N N11 VX6 . . . E 3 -53.317 48.38 -7.179 1 73.88 ? N11 VX6 547 A 1 HETATM 12 C C12 VX6 . . . E 3 -53.552 47.293 -7.926 1 72.76 ? C12 VX6 547 A 1 HETATM 13 N N13 VX6 . . . E 3 -53.122 46.064 -7.53 1 73.9 ? N13 VX6 547 A 1 HETATM 14 N N14 VX6 . . . E 3 -52.408 49.395 -5.328 1 76.82 ? N14 VX6 547 A 1 HETATM 15 C C15 VX6 . . . E 3 -52.752 50.636 -5.691 1 78.53 ? C15 VX6 547 A 1 HETATM 16 C C17 VX6 . . . E 3 -53.474 51.073 -6.733 1 79.02 ? C17 VX6 547 A 1 HETATM 17 C C18 VX6 . . . E 3 -53.496 52.396 -6.573 1 79.51 ? C18 VX6 547 A 1 HETATM 18 N N19 VX6 . . . E 3 -52.822 52.7 -5.471 1 80.86 ? N19 VX6 547 A 1 HETATM 19 N N20 VX6 . . . E 3 -52.381 51.671 -4.948 1 79.76 ? N20 VX6 547 A 1 HETATM 20 C C21 VX6 . . . E 3 -54.168 53.452 -7.455 1 77.28 ? C21 VX6 547 A 1 HETATM 21 S S23 VX6 . . . E 3 -54.441 47.472 -9.425 1 68.39 ? S23 VX6 547 A 1 HETATM 22 C C24 VX6 . . . E 3 -54.899 49.122 -9.761 1 66.16 ? C24 VX6 547 A 1 HETATM 23 C C25 VX6 . . . E 3 -54.021 49.998 -10.363 1 66.7 ? C25 VX6 547 A 1 HETATM 24 C C26 VX6 . . . E 3 -54.383 51.31 -10.661 1 66.6 ? C26 VX6 547 A 1 HETATM 25 C C27 VX6 . . . E 3 -55.653 51.786 -10.368 1 67.61 ? C27 VX6 547 A 1 HETATM 26 C C28 VX6 . . . E 3 -56.532 50.867 -9.792 1 67.3 ? C28 VX6 547 A 1 HETATM 27 C C29 VX6 . . . E 3 -56.17 49.556 -9.5 1 66.09 ? C29 VX6 547 A 1 HETATM 28 N N30 VX6 . . . E 3 -56.064 53.067 -10.649 1 67.96 ? N30 VX6 547 A 1 HETATM 29 C C31 VX6 . . . E 3 -55.222 54.066 -10.932 1 68.57 ? C31 VX6 547 A 1 HETATM 30 O O32 VX6 . . . E 3 -54.019 53.932 -11.003 1 68.23 ? O32 VX6 547 A 1 HETATM 31 C C33 VX6 . . . E 3 -55.801 55.402 -11.348 1 71.54 ? C33 VX6 547 A 1 HETATM 32 C C34 VX6 . . . E 3 -56.827 56.093 -10.44 1 74.16 ? C34 VX6 547 A 1 HETATM 33 C C35 VX6 . . . E 3 -55.37 56.574 -10.488 1 74.23 ? C35 VX6 547 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #