data_2XYN
#
_model_server_result.job_id            fey-CXiVDMjz1-NmFnpr2g 
_model_server_result.datetime_utc      '2024-12-27 01:09:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xyn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":548}' 
#
_entry.id    2XYN 
#
_exptl.entry_id    2XYN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              464.586 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2XYN 
_cell.length_a            170.5 
_cell.length_b            170.5 
_cell.length_c            100.651 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XYN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,N 1 1 
B,H,I,J,O 2 1 
C,K,L,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D NA NA . A NA 1 1_555 A O ILE 195 A ILE 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
metalc ? metalc2 D NA NA . A NA 1 1_555 A O THR 198 A THR 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc3 D NA NA . A NA 1 1_555 N O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? 
metalc ? metalc4 A O ARG 265 A ARG 519 1_555 G NA NA . A NA 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc5 G NA NA . A NA 549 1_555 N O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
#
_chem_comp.formula           'C23 H28 N8 O S' 
_chem_comp.formula_weight    464.586 
_chem_comp.id                VX6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN-1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2-YLSULFANYL]-PHENYL}-AMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 VX6 sing 376 n n 
N1 C6 VX6 sing 377 n n 
N1 C7 VX6 sing 378 n n 
C2 C3 VX6 sing 379 n n 
C2 H21 VX6 sing 380 n n 
C2 H22 VX6 sing 381 n n 
C3 N4 VX6 sing 382 n n 
C3 H31 VX6 sing 383 n n 
C3 H32 VX6 sing 384 n n 
N4 C5 VX6 sing 385 n n 
N4 C8 VX6 sing 386 n n 
C5 C6 VX6 sing 387 n n 
C5 H51 VX6 sing 388 n n 
C5 H52 VX6 sing 389 n n 
C6 H61 VX6 sing 390 n n 
C6 H62 VX6 sing 391 n n 
C7 H71 VX6 sing 392 n n 
C7 H72 VX6 sing 393 n n 
C7 H73 VX6 sing 394 n n 
C8 C9 VX6 sing 395 n y 
C8 N13 VX6 doub 396 n y 
C9 C10 VX6 doub 397 n y 
C9 H9 VX6 sing 398 n n 
C10 N11 VX6 sing 399 n y 
C10 N14 VX6 sing 400 n n 
N11 C12 VX6 doub 401 n y 
C12 N13 VX6 sing 402 n y 
C12 S23 VX6 sing 403 n n 
N14 C15 VX6 sing 404 n n 
N14 H14 VX6 sing 405 n n 
C15 C17 VX6 doub 406 n y 
C15 N20 VX6 sing 407 n y 
C17 C18 VX6 sing 408 n y 
C17 H17 VX6 sing 409 n n 
C18 N19 VX6 doub 410 n y 
C18 C21 VX6 sing 411 n n 
N19 N20 VX6 sing 412 n y 
N20 H20 VX6 sing 413 n n 
C21 H211 VX6 sing 414 n n 
C21 H212 VX6 sing 415 n n 
C21 H213 VX6 sing 416 n n 
S23 C24 VX6 sing 417 n n 
C24 C25 VX6 sing 418 n y 
C24 C29 VX6 doub 419 n y 
C25 C26 VX6 doub 420 n y 
C25 H25 VX6 sing 421 n n 
C26 C27 VX6 sing 422 n y 
C26 H26 VX6 sing 423 n n 
C27 C28 VX6 doub 424 n y 
C27 N30 VX6 sing 425 n n 
C28 C29 VX6 sing 426 n y 
C28 H28 VX6 sing 427 n n 
C29 H29 VX6 sing 428 n n 
N30 C31 VX6 sing 429 n n 
N30 H30 VX6 sing 430 n n 
C31 O32 VX6 doub 431 n n 
C31 C33 VX6 sing 432 n n 
C33 C34 VX6 sing 433 n n 
C33 C35 VX6 sing 434 n n 
C33 H33 VX6 sing 435 n n 
C34 C35 VX6 sing 436 n n 
C34 H341 VX6 sing 437 n n 
C34 H342 VX6 sing 438 n n 
C35 H351 VX6 sing 439 n n 
C35 H352 VX6 sing 440 n n 
#
_atom_sites.entry_id                     2XYN 
_atom_sites.fract_transf_matrix[1][1]    0.005865 
_atom_sites.fract_transf_matrix[1][2]    0.003386 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NA A 1 1 1 NA NA . 
E 3 VX6 A 1 547 547 VX6 VX6 . 
F 4 CL A 1 548 548 CL CL . 
G 2 NA A 1 549 549 NA NA . 
H 3 VX6 B 1 547 547 VX6 VX6 . 
I 3 VX6 B 1 548 548 VX6 VX6 . 
J 3 VX6 B 1 549 549 VX6 VX6 . 
K 3 VX6 C 1 547 547 VX6 VX6 . 
L 3 VX6 C 1 548 548 VX6 VX6 . 
M 3 VX6 C 1 549 549 VX6 VX6 . 
N 5 HOH A 1 2001 2001 HOH HOH . 
N 5 HOH A 2 2002 2002 HOH HOH . 
N 5 HOH A 3 2003 2003 HOH HOH . 
N 5 HOH A 4 2004 2004 HOH HOH . 
N 5 HOH A 5 2005 2005 HOH HOH . 
N 5 HOH A 6 2006 2006 HOH HOH . 
O 5 HOH B 1 2001 2001 HOH HOH . 
O 5 HOH B 2 2002 2002 HOH HOH . 
O 5 HOH B 3 2003 2003 HOH HOH . 
O 5 HOH B 4 2004 2004 HOH HOH . 
O 5 HOH B 5 2005 2005 HOH HOH . 
O 5 HOH B 6 2006 2006 HOH HOH . 
O 5 HOH B 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 VX6 . . . L 3 -49.603 34.052 -37.351 1 255.88 ? N1 VX6 548 C 1 
HETATM 2 C C2 VX6 . . . L 3 -50.581 35.136 -37.176 1 253.7 ? C2 VX6 548 C 1 
HETATM 3 C C3 VX6 . . . L 3 -51.542 35.102 -38.372 1 250.12 ? C3 VX6 548 C 1 
HETATM 4 N N4 VX6 . . . L 3 -50.866 34.876 -39.692 1 253.33 ? N4 VX6 548 C 1 
HETATM 5 C C5 VX6 . . . L 3 -49.42 34.509 -39.805 1 259.3 ? C5 VX6 548 C 1 
HETATM 6 C C6 VX6 . . . L 3 -48.685 34.461 -38.442 1 261.78 ? C6 VX6 548 C 1 
HETATM 7 C C7 VX6 . . . L 3 -48.908 33.771 -36.076 1 256.14 ? C7 VX6 548 C 1 
HETATM 8 C C8 VX6 . . . L 3 -51.675 35.036 -40.836 1 250.73 ? C8 VX6 548 C 1 
HETATM 9 C C9 VX6 . . . L 3 -51.229 34.957 -42.151 1 253.55 ? C9 VX6 548 C 1 
HETATM 10 C C10 VX6 . . . L 3 -52.166 35.145 -43.184 1 252.32 ? C10 VX6 548 C 1 
HETATM 11 N N11 VX6 . . . L 3 -53.461 35.402 -42.888 1 248.37 ? N11 VX6 548 C 1 
HETATM 12 C C12 VX6 . . . L 3 -53.852 35.47 -41.608 1 246.49 ? C12 VX6 548 C 1 
HETATM 13 N N13 VX6 . . . L 3 -52.966 35.295 -40.625 1 246.31 ? N13 VX6 548 C 1 
HETATM 14 N N14 VX6 . . . L 3 -51.741 35.07 -44.456 1 255.46 ? N14 VX6 548 C 1 
HETATM 15 C C15 VX6 . . . L 3 -52.528 35.095 -45.557 1 254.75 ? C15 VX6 548 C 1 
HETATM 16 C C17 VX6 . . . L 3 -53.787 35.533 -45.689 1 251.09 ? C17 VX6 548 C 1 
HETATM 17 C C18 VX6 . . . L 3 -54.049 35.335 -46.988 1 252.94 ? C18 VX6 548 C 1 
HETATM 18 N N19 VX6 . . . L 3 -52.98 34.817 -47.585 1 256.46 ? N19 VX6 548 C 1 
HETATM 19 N N20 VX6 . . . L 3 -52.082 34.672 -46.75 1 257.82 ? N20 VX6 548 C 1 
HETATM 20 C C21 VX6 . . . L 3 -55.359 35.645 -47.737 1 251.35 ? C21 VX6 548 C 1 
HETATM 21 S S23 VX6 . . . L 3 -55.491 35.789 -41.08 1 245.27 ? S23 VX6 548 C 1 
HETATM 22 C C24 VX6 . . . L 3 -56.468 36.002 -42.489 1 248.83 ? C24 VX6 548 C 1 
HETATM 23 C C25 VX6 . . . L 3 -56.305 35.186 -43.591 1 250.63 ? C25 VX6 548 C 1 
HETATM 24 C C26 VX6 . . . L 3 -57.12 35.386 -44.697 1 253.4 ? C26 VX6 548 C 1 
HETATM 25 C C27 VX6 . . . L 3 -58.114 36.368 -44.71 1 255.37 ? C27 VX6 548 C 1 
HETATM 26 C C28 VX6 . . . L 3 -58.269 37.189 -43.589 1 253.79 ? C28 VX6 548 C 1 
HETATM 27 C C29 VX6 . . . L 3 -57.451 36.993 -42.478 1 251.43 ? C29 VX6 548 C 1 
HETATM 28 N N30 VX6 . . . L 3 -58.874 36.57 -45.802 1 258.81 ? N30 VX6 548 C 1 
HETATM 29 C C31 VX6 . . . L 3 -59.291 35.592 -46.626 1 258.5 ? C31 VX6 548 C 1 
HETATM 30 O O32 VX6 . . . L 3 -59.08 34.385 -46.473 1 255.45 ? O32 VX6 548 C 1 
HETATM 31 C C33 VX6 . . . L 3 -60.065 36.092 -47.857 1 262.18 ? C33 VX6 548 C 1 
HETATM 32 C C34 VX6 . . . L 3 -59.144 36.421 -49.052 1 269.8 ? C34 VX6 548 C 1 
HETATM 33 C C35 VX6 . . . L 3 -60.043 35.181 -49.098 1 263.1 ? C35 VX6 548 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           33 
#