data_2XYW # _model_server_result.job_id GwjW_tvgS6SdXvBVaiYUKQ _model_server_result.datetime_utc '2024-12-13 13:21:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1442}' # _entry.id 2XYW # _exptl.entry_id 2XYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.31 _cell.angle_gamma 90 _cell.entry_id 2XYW _cell.length_a 39.368 _cell.length_b 93.218 _cell.length_c 97.473 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 127 n n C1 C2 BOG sing 128 n n C1 O5 BOG sing 129 n n C1 H1 BOG sing 130 n n O1 C1' BOG sing 131 n n C2 O2 BOG sing 132 n n C2 C3 BOG sing 133 n n C2 H2 BOG sing 134 n n O2 HO2 BOG sing 135 n n C3 O3 BOG sing 136 n n C3 C4 BOG sing 137 n n C3 H3 BOG sing 138 n n O3 HO3 BOG sing 139 n n C4 O4 BOG sing 140 n n C4 C5 BOG sing 141 n n C4 H4 BOG sing 142 n n O4 HO4 BOG sing 143 n n C5 O5 BOG sing 144 n n C5 C6 BOG sing 145 n n C5 H5 BOG sing 146 n n C6 O6 BOG sing 147 n n C6 H61 BOG sing 148 n n C6 H62 BOG sing 149 n n O6 HO6 BOG sing 150 n n C1' C2' BOG sing 151 n n C1' "H1'1" BOG sing 152 n n C1' "H1'2" BOG sing 153 n n C2' C3' BOG sing 154 n n C2' "H2'1" BOG sing 155 n n C2' "H2'2" BOG sing 156 n n C3' C4' BOG sing 157 n n C3' "H3'1" BOG sing 158 n n C3' "H3'2" BOG sing 159 n n C4' C5' BOG sing 160 n n C4' "H4'1" BOG sing 161 n n C4' "H4'2" BOG sing 162 n n C5' C6' BOG sing 163 n n C5' "H5'1" BOG sing 164 n n C5' "H5'2" BOG sing 165 n n C6' C7' BOG sing 166 n n C6' "H6'1" BOG sing 167 n n C6' "H6'2" BOG sing 168 n n C7' C8' BOG sing 169 n n C7' "H7'1" BOG sing 170 n n C7' "H7'2" BOG sing 171 n n C8' "H8'1" BOG sing 172 n n C8' "H8'2" BOG sing 173 n n C8' "H8'3" BOG sing 174 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 2XYW _atom_sites.fract_transf_matrix[1][1] 0.025401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003258 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 08S A 1 1441 1441 08S 08S . D 3 BOG A 1 1442 1442 BOG BOG . E 2 08S B 1 1441 1441 08S 08S . F 3 BOG B 1 1442 1442 BOG BOG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . D 3 9.214 -19.793 30.094 1 85.26 ? C1 BOG 1442 A 1 HETATM 2 O O1 BOG . . . D 3 10.586 -19.484 30.585 1 80.01 ? O1 BOG 1442 A 1 HETATM 3 C C2 BOG . . . D 3 9.236 -21.114 29.21 1 88.62 ? C2 BOG 1442 A 1 HETATM 4 O O2 BOG . . . D 3 10.247 -21.087 28.14 1 90.17 ? O2 BOG 1442 A 1 HETATM 5 C C3 BOG . . . D 3 7.791 -21.676 28.807 1 88.63 ? C3 BOG 1442 A 1 HETATM 6 O O3 BOG . . . D 3 7.829 -22.951 28.121 1 87.68 ? O3 BOG 1442 A 1 HETATM 7 C C4 BOG . . . D 3 6.641 -21.63 29.903 1 89.08 ? C4 BOG 1442 A 1 HETATM 8 O O4 BOG . . . D 3 5.236 -21.823 29.429 1 89.49 ? O4 BOG 1442 A 1 HETATM 9 C C5 BOG . . . D 3 6.825 -20.458 30.961 1 88.08 ? C5 BOG 1442 A 1 HETATM 10 O O5 BOG . . . D 3 8.291 -20.111 31.255 1 86.75 ? O5 BOG 1442 A 1 HETATM 11 C C6 BOG . . . D 3 5.836 -20.675 32.163 1 87.95 ? C6 BOG 1442 A 1 HETATM 12 O O6 BOG . . . D 3 6.395 -20.786 33.498 1 88.01 ? O6 BOG 1442 A 1 HETATM 13 C C1' BOG . . . D 3 11.312 -18.549 29.736 1 72.43 ? C1' BOG 1442 A 1 HETATM 14 C C2' BOG . . . D 3 12.708 -18.063 30.19 1 64.52 ? C2' BOG 1442 A 1 HETATM 15 C C3' BOG . . . D 3 13.921 -18.56 29.39 1 57.24 ? C3' BOG 1442 A 1 HETATM 16 C C4' BOG . . . D 3 14.69 -17.528 28.515 1 49.22 ? C4' BOG 1442 A 1 HETATM 17 C C5' BOG . . . D 3 15.991 -18.047 27.976 1 43.65 ? C5' BOG 1442 A 1 HETATM 18 C C6' BOG . . . D 3 17.1 -17.047 28.158 1 42.69 ? C6' BOG 1442 A 1 HETATM 19 C C7' BOG . . . D 3 18.267 -17.603 29.022 1 41.92 ? C7' BOG 1442 A 1 HETATM 20 C C8' BOG . . . D 3 19.618 -18.088 28.423 1 40.28 ? C8' BOG 1442 A 1 # _model_server_stats.io_time_ms 119 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #