data_2XYW
#
_model_server_result.job_id            sOHchIkWSz2exUMteGdK9Q 
_model_server_result.datetime_utc      '2024-12-07 08:36:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2xyw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1442}' 
#
_entry.id    2XYW 
#
_exptl.entry_id    2XYW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.31 
_cell.angle_gamma         90 
_cell.entry_id            2XYW 
_cell.length_a            39.368 
_cell.length_b            93.218 
_cell.length_c            97.473 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2XYW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 127 n n 
C1 C2 BOG sing 128 n n 
C1 O5 BOG sing 129 n n 
C1 H1 BOG sing 130 n n 
O1 C1' BOG sing 131 n n 
C2 O2 BOG sing 132 n n 
C2 C3 BOG sing 133 n n 
C2 H2 BOG sing 134 n n 
O2 HO2 BOG sing 135 n n 
C3 O3 BOG sing 136 n n 
C3 C4 BOG sing 137 n n 
C3 H3 BOG sing 138 n n 
O3 HO3 BOG sing 139 n n 
C4 O4 BOG sing 140 n n 
C4 C5 BOG sing 141 n n 
C4 H4 BOG sing 142 n n 
O4 HO4 BOG sing 143 n n 
C5 O5 BOG sing 144 n n 
C5 C6 BOG sing 145 n n 
C5 H5 BOG sing 146 n n 
C6 O6 BOG sing 147 n n 
C6 H61 BOG sing 148 n n 
C6 H62 BOG sing 149 n n 
O6 HO6 BOG sing 150 n n 
C1' C2' BOG sing 151 n n 
C1' "H1'1" BOG sing 152 n n 
C1' "H1'2" BOG sing 153 n n 
C2' C3' BOG sing 154 n n 
C2' "H2'1" BOG sing 155 n n 
C2' "H2'2" BOG sing 156 n n 
C3' C4' BOG sing 157 n n 
C3' "H3'1" BOG sing 158 n n 
C3' "H3'2" BOG sing 159 n n 
C4' C5' BOG sing 160 n n 
C4' "H4'1" BOG sing 161 n n 
C4' "H4'2" BOG sing 162 n n 
C5' C6' BOG sing 163 n n 
C5' "H5'1" BOG sing 164 n n 
C5' "H5'2" BOG sing 165 n n 
C6' C7' BOG sing 166 n n 
C6' "H6'1" BOG sing 167 n n 
C6' "H6'2" BOG sing 168 n n 
C7' C8' BOG sing 169 n n 
C7' "H7'1" BOG sing 170 n n 
C7' "H7'2" BOG sing 171 n n 
C8' "H8'1" BOG sing 172 n n 
C8' "H8'2" BOG sing 173 n n 
C8' "H8'3" BOG sing 174 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     2XYW 
_atom_sites.fract_transf_matrix[1][1]    0.025401 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003258 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010728 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010343 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 08S A 1 1441 1441 08S 08S . 
D 3 BOG A 1 1442 1442 BOG BOG . 
E 2 08S B 1 1441 1441 08S 08S . 
F 3 BOG B 1 1442 1442 BOG BOG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . F 3 -11.06 19.705 -16.624 1 100.87 ? C1 BOG 1442 B 1 
HETATM 2 O O1 BOG . . . F 3 -12.492 19.463 -16.797 1 95.86 ? O1 BOG 1442 B 1 
HETATM 3 C C2 BOG . . . F 3 -10.679 21.09 -17.262 1 103.55 ? C2 BOG 1442 B 1 
HETATM 4 O O2 BOG . . . F 3 -11.139 21.312 -18.616 1 104.27 ? O2 BOG 1442 B 1 
HETATM 5 C C3 BOG . . . F 3 -9.167 21.435 -17.075 1 105.07 ? C3 BOG 1442 B 1 
HETATM 6 O O3 BOG . . . F 3 -8.948 22.76 -17.611 1 104.1 ? O3 BOG 1442 B 1 
HETATM 7 C C4 BOG . . . F 3 -8.571 21.188 -15.612 1 106.74 ? C4 BOG 1442 B 1 
HETATM 8 O O4 BOG . . . F 3 -7.096 21.056 -15.528 1 107.42 ? O4 BOG 1442 B 1 
HETATM 9 C C5 BOG . . . F 3 -9.354 20.119 -14.709 1 106.03 ? C5 BOG 1442 B 1 
HETATM 10 O O5 BOG . . . F 3 -10.786 19.895 -15.165 1 103.71 ? O5 BOG 1442 B 1 
HETATM 11 C C6 BOG . . . F 3 -9.249 20.523 -13.186 1 106.44 ? C6 BOG 1442 B 1 
HETATM 12 O O6 BOG . . . F 3 -8.501 19.691 -12.271 1 106.46 ? O6 BOG 1442 B 1 
HETATM 13 C C1' BOG . . . F 3 -12.783 18.059 -16.996 1 89.57 ? C1' BOG 1442 B 1 
HETATM 14 C C2' BOG . . . F 3 -14.278 17.651 -16.948 1 82.32 ? C2' BOG 1442 B 1 
HETATM 15 C C3' BOG . . . F 3 -15.276 18.351 -17.892 1 74.01 ? C3' BOG 1442 B 1 
HETATM 16 C C4' BOG . . . F 3 -15.684 17.509 -19.14 1 65.2 ? C4' BOG 1442 B 1 
HETATM 17 C C5' BOG . . . F 3 -16.88 18.068 -19.868 1 56.28 ? C5' BOG 1442 B 1 
HETATM 18 C C6' BOG . . . F 3 -17.628 17.053 -20.635 1 50.23 ? C6' BOG 1442 B 1 
HETATM 19 C C7' BOG . . . F 3 -18.98 17.688 -20.868 1 48.43 ? C7' BOG 1442 B 1 
HETATM 20 C C8' BOG . . . F 3 -20.164 17.435 -19.922 1 46.94 ? C8' BOG 1442 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           585 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           20 
#