data_2XZ6 # _model_server_result.job_id JSUxV1rMY5Wyjx38jHd3ZA _model_server_result.datetime_utc '2024-11-23 02:46:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1206}' # _entry.id 2XZ6 # _exptl.entry_id 2XZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.236 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(TRIMETHYLAMMONIUM)ETHYL THIOL' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XZ6 _cell.length_a 144.824 _cell.length_b 144.824 _cell.length_c 274.588 _cell.Z_PDB 80 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA pentameric 5 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression F,G,H,I,J,P,Q,R,S,T 1 1 A,B,C,D,E,K,L,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 188 A CYS 188 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 188 B CYS 188 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 C SG CYS 188 C CYS 188 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 D SG CYS 188 D CYS 188 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 188 E CYS 188 1_555 E SG CYS 189 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf11 F SG CYS 125 F CYS 125 1_555 F SG CYS 138 F CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf12 F SG CYS 188 F CYS 188 1_555 F SG CYS 189 F CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf13 G SG CYS 125 G CYS 125 1_555 G SG CYS 138 G CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf14 G SG CYS 188 G CYS 188 1_555 G SG CYS 189 G CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf15 H SG CYS 125 H CYS 125 1_555 H SG CYS 138 H CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf16 H SG CYS 188 H CYS 188 1_555 H SG CYS 189 H CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf17 I SG CYS 125 I CYS 125 1_555 I SG CYS 138 I CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf18 I SG CYS 188 I CYS 188 1_555 I SG CYS 189 I CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf19 J SG CYS 125 J CYS 125 1_555 J SG CYS 138 J CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf20 J SG CYS 188 J CYS 188 1_555 J SG CYS 189 J CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A SG CYS 53 A CYS 53 1_555 K SD ETM . A ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? covale ? covale2 B SG CYS 53 B CYS 53 1_555 L SD ETM . B ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? covale ? covale3 C SG CYS 53 C CYS 53 1_555 M SD ETM . C ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? covale ? covale4 D SG CYS 53 D CYS 53 1_555 N SD ETM . D ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale5 E SG CYS 53 E CYS 53 1_555 O SD ETM . E ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? covale ? covale6 F SG CYS 53 F CYS 53 1_555 P SD ETM . F ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? covale ? covale7 G SG CYS 53 G CYS 53 1_555 Q SD ETM . G ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale8 H SG CYS 53 H CYS 53 1_555 R SD ETM . H ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? covale ? covale9 I SG CYS 53 I CYS 53 1_555 S SD ETM . I ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale10 J SG CYS 53 J CYS 53 1_555 T SD ETM . J ETM 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'C5 H14 N S 1' _chem_comp.formula_weight 120.236 _chem_comp.id ETM _chem_comp.mon_nstd_flag . _chem_comp.name '2-(TRIMETHYLAMMONIUM)ETHYL THIOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SD C1 ETM sing 83 n n SD HSD ETM sing 84 n n C1 C2 ETM sing 85 n n C1 H11 ETM sing 86 n n C1 H12 ETM sing 87 n n C2 N1 ETM sing 88 n n C2 H21 ETM sing 89 n n C2 H22 ETM sing 90 n n N1 C3 ETM sing 91 n n N1 C4 ETM sing 92 n n N1 C5 ETM sing 93 n n C3 H31 ETM sing 94 n n C3 H32 ETM sing 95 n n C3 H33 ETM sing 96 n n C4 H41 ETM sing 97 n n C4 H42 ETM sing 98 n n C4 H43 ETM sing 99 n n C5 H51 ETM sing 100 n n C5 H52 ETM sing 101 n n C5 H53 ETM sing 102 n n # _atom_sites.entry_id 2XZ6 _atom_sites.fract_transf_matrix[1][1] 0.006905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 ETM A 1 1206 1206 ETM ETM . L 2 ETM B 1 1206 1206 ETM ETM . M 2 ETM C 1 1206 1206 ETM ETM . N 2 ETM D 1 1206 1206 ETM ETM . O 2 ETM E 1 1206 1206 ETM ETM . P 2 ETM F 1 1206 1206 ETM ETM . Q 2 ETM G 1 1206 1206 ETM ETM . R 2 ETM H 1 1206 1206 ETM ETM . S 2 ETM I 1 1206 1206 ETM ETM . T 2 ETM J 1 1206 1206 ETM ETM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S SD ETM . . . R 2 -19.493 97.75 -36.872 0.83 116.01 ? SD ETM 1206 H 1 HETATM 2 C C1 ETM . . . R 2 -20.524 96.309 -36.484 0.83 58.7 ? C1 ETM 1206 H 1 HETATM 3 C C2 ETM . . . R 2 -20.78 95.818 -35.028 0.83 120 ? C2 ETM 1206 H 1 HETATM 4 N N1 ETM . . . R 2 -21.167 94.432 -34.672 0.83 97.57 ? N1 ETM 1206 H 1 HETATM 5 C C3 ETM . . . R 2 -22.337 94.445 -33.753 0.83 20.72 ? C3 ETM 1206 H 1 HETATM 6 C C4 ETM . . . R 2 -21.062 93.635 -35.885 0.83 101.16 ? C4 ETM 1206 H 1 HETATM 7 C C5 ETM . . . R 2 -20.205 93.761 -33.803 0.83 93.86 ? C5 ETM 1206 H 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #