data_2XZO # _model_server_result.job_id 8-KohGHpH4DAwwTImw_3IQ _model_server_result.datetime_utc '2024-11-21 21:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2xzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 2XZO # _exptl.entry_id 2XZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2XZO _cell.length_a 77.066 _cell.length_b 101.896 _cell.length_c 112.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 208 A THR 499 1_555 H MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A O MET 516 A MET 807 1_555 I MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc3 F O2B ADP . A ADP 1004 1_555 H MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc4 H MG MG . A MG 1006 1_555 J O HOH . A HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc5 H MG MG . A MG 1006 1_555 J O HOH . A HOH 1119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 H MG MG . A MG 1006 1_555 J O HOH . A HOH 1195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 2XZO _atom_sites.fract_transf_matrix[1][1] 0.012976 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009814 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 1PE A 1 1001 1 1PE 1PE . D 3 1PE A 1 1002 2 1PE 1PE . E 3 1PE A 1 1003 6 1PE 1PE . F 4 ADP A 1 1004 480 ADP ADP . G 5 ALF A 1 1005 481 ALF ALF . H 6 MG A 1 1006 482 MG MG . I 6 MG A 1 1007 483 MG MG . J 7 HOH A 1 1101 2110 HOH HOH . J 7 HOH A 2 1102 2002 HOH HOH . J 7 HOH A 3 1103 2080 HOH HOH . J 7 HOH A 4 1104 2085 HOH HOH . J 7 HOH A 5 1105 2072 HOH HOH . J 7 HOH A 6 1106 2077 HOH HOH . J 7 HOH A 7 1107 2084 HOH HOH . J 7 HOH A 8 1108 2061 HOH HOH . J 7 HOH A 9 1109 2043 HOH HOH . J 7 HOH A 10 1110 2094 HOH HOH . J 7 HOH A 11 1111 2115 HOH HOH . J 7 HOH A 12 1112 2062 HOH HOH . J 7 HOH A 13 1113 2109 HOH HOH . J 7 HOH A 14 1114 2106 HOH HOH . J 7 HOH A 15 1115 2118 HOH HOH . J 7 HOH A 16 1116 2090 HOH HOH . J 7 HOH A 17 1117 2083 HOH HOH . J 7 HOH A 18 1118 2113 HOH HOH . J 7 HOH A 19 1119 2001 HOH HOH . J 7 HOH A 20 1120 2018 HOH HOH . J 7 HOH A 21 1121 2046 HOH HOH . J 7 HOH A 22 1122 2020 HOH HOH . J 7 HOH A 23 1123 2070 HOH HOH . J 7 HOH A 24 1124 2081 HOH HOH . J 7 HOH A 25 1125 2047 HOH HOH . J 7 HOH A 26 1126 2092 HOH HOH . J 7 HOH A 27 1127 2088 HOH HOH . J 7 HOH A 28 1128 2064 HOH HOH . J 7 HOH A 29 1129 2007 HOH HOH . J 7 HOH A 30 1130 2116 HOH HOH . J 7 HOH A 31 1131 2013 HOH HOH . J 7 HOH A 32 1132 2051 HOH HOH . J 7 HOH A 33 1133 2093 HOH HOH . J 7 HOH A 34 1134 2002 HOH HOH . J 7 HOH A 35 1135 2010 HOH HOH . J 7 HOH A 36 1136 2034 HOH HOH . J 7 HOH A 37 1137 2041 HOH HOH . J 7 HOH A 38 1138 2025 HOH HOH . J 7 HOH A 39 1139 2058 HOH HOH . J 7 HOH A 40 1140 2028 HOH HOH . J 7 HOH A 41 1141 2082 HOH HOH . J 7 HOH A 42 1142 2073 HOH HOH . J 7 HOH A 43 1143 2089 HOH HOH . J 7 HOH A 44 1144 2015 HOH HOH . J 7 HOH A 45 1145 2060 HOH HOH . J 7 HOH A 46 1146 2091 HOH HOH . J 7 HOH A 47 1147 2022 HOH HOH . J 7 HOH A 48 1148 2049 HOH HOH . J 7 HOH A 49 1149 2066 HOH HOH . J 7 HOH A 50 1150 2100 HOH HOH . J 7 HOH A 51 1151 2075 HOH HOH . J 7 HOH A 52 1152 2059 HOH HOH . J 7 HOH A 53 1153 2095 HOH HOH . J 7 HOH A 54 1154 2006 HOH HOH . J 7 HOH A 55 1155 2112 HOH HOH . J 7 HOH A 56 1156 2040 HOH HOH . J 7 HOH A 57 1157 2009 HOH HOH . J 7 HOH A 58 1158 2031 HOH HOH . J 7 HOH A 59 1159 2098 HOH HOH . J 7 HOH A 60 1160 2004 HOH HOH . J 7 HOH A 61 1161 2035 HOH HOH . J 7 HOH A 62 1162 2096 HOH HOH . J 7 HOH A 63 1163 2048 HOH HOH . J 7 HOH A 64 1164 2074 HOH HOH . J 7 HOH A 65 1165 2002 HOH HOH . J 7 HOH A 66 1166 2078 HOH HOH . J 7 HOH A 67 1167 2117 HOH HOH . J 7 HOH A 68 1168 2027 HOH HOH . J 7 HOH A 69 1169 2079 HOH HOH . J 7 HOH A 70 1170 2102 HOH HOH . J 7 HOH A 71 1171 2014 HOH HOH . J 7 HOH A 72 1172 2056 HOH HOH . J 7 HOH A 73 1173 2068 HOH HOH . J 7 HOH A 74 1174 2057 HOH HOH . J 7 HOH A 75 1175 2001 HOH HOH . J 7 HOH A 76 1176 2008 HOH HOH . J 7 HOH A 77 1177 2032 HOH HOH . J 7 HOH A 78 1178 2055 HOH HOH . J 7 HOH A 79 1179 2050 HOH HOH . J 7 HOH A 80 1180 2086 HOH HOH . J 7 HOH A 81 1181 2037 HOH HOH . J 7 HOH A 82 1182 2016 HOH HOH . J 7 HOH A 83 1183 2044 HOH HOH . J 7 HOH A 84 1184 2114 HOH HOH . J 7 HOH A 85 1185 2063 HOH HOH . J 7 HOH A 86 1186 2101 HOH HOH . J 7 HOH A 87 1187 2052 HOH HOH . J 7 HOH A 88 1188 2108 HOH HOH . J 7 HOH A 89 1189 2001 HOH HOH . J 7 HOH A 90 1190 2030 HOH HOH . J 7 HOH A 91 1191 2038 HOH HOH . J 7 HOH A 92 1192 2026 HOH HOH . J 7 HOH A 93 1193 2024 HOH HOH . J 7 HOH A 94 1194 2104 HOH HOH . J 7 HOH A 95 1195 2054 HOH HOH . J 7 HOH A 96 1196 2021 HOH HOH . J 7 HOH A 97 1197 2042 HOH HOH . J 7 HOH A 98 1198 2033 HOH HOH . J 7 HOH A 99 1199 2097 HOH HOH . J 7 HOH A 100 1200 2003 HOH HOH . J 7 HOH A 101 1201 2111 HOH HOH . J 7 HOH A 102 1202 2067 HOH HOH . J 7 HOH A 103 1203 2036 HOH HOH . J 7 HOH A 104 1204 2005 HOH HOH . J 7 HOH A 105 1205 2039 HOH HOH . J 7 HOH A 106 1206 2071 HOH HOH . J 7 HOH A 107 1207 2107 HOH HOH . J 7 HOH A 108 1208 2069 HOH HOH . J 7 HOH A 109 1209 2076 HOH HOH . J 7 HOH A 110 1210 2045 HOH HOH . J 7 HOH A 111 1211 2099 HOH HOH . J 7 HOH A 112 1212 2029 HOH HOH . J 7 HOH A 113 1213 2017 HOH HOH . J 7 HOH A 114 1214 2019 HOH HOH . J 7 HOH A 115 1215 2012 HOH HOH . J 7 HOH A 116 1216 2105 HOH HOH . J 7 HOH A 117 1217 2065 HOH HOH . J 7 HOH A 118 1218 2103 HOH HOH . J 7 HOH A 119 1219 2087 HOH HOH . J 7 HOH A 120 1220 2011 HOH HOH . J 7 HOH A 121 1221 2053 HOH HOH . J 7 HOH A 122 1222 2023 HOH HOH . K 7 HOH D 1 101 2002 HOH HOH . K 7 HOH D 2 102 2003 HOH HOH . K 7 HOH D 3 103 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . E 3 19.465 -15.877 -15.087 1 44.7 ? OH2 1PE 1003 A 1 HETATM 2 C C12 1PE . . . E 3 20.241 -14.912 -15.687 1 43.19 ? C12 1PE 1003 A 1 HETATM 3 C C22 1PE . . . E 3 20.152 -13.521 -15.152 1 42.77 ? C22 1PE 1003 A 1 HETATM 4 O OH3 1PE . . . E 3 21.313 -12.789 -15.103 1 49.88 ? OH3 1PE 1003 A 1 HETATM 5 C C13 1PE . . . E 3 22.123 -12.438 -17.399 1 56.17 ? C13 1PE 1003 A 1 HETATM 6 C C23 1PE . . . E 3 22.309 -13.027 -16.038 1 52.02 ? C23 1PE 1003 A 1 HETATM 7 O OH4 1PE . . . E 3 22.997 -12.795 -18.403 1 56.46 ? OH4 1PE 1003 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 7 #