data_2Y00
#
_model_server_result.job_id            5BWsSE3gaTP3ZNUQMIPjZw 
_model_server_result.datetime_utc      '2024-11-05 23:29:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y00 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":501}' 
#
_entry.id    2Y00 
#
_exptl.entry_id    2Y00 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              379.489 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEGA-10 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.2 
_cell.angle_gamma         90 
_cell.entry_id            2Y00 
_cell.length_a            90 
_cell.length_b            60.5 
_cell.length_c            101.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y00 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,T 1 1 
B,L,M,N,O,P,Q,R,S,U 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc1 A O CYS 162 A CYS 192 1_555 K NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc2 A O ASP 165 A ASP 195 1_555 K NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc3 A O CYS 168 A CYS 198 1_555 K NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc4 K NA NA . A NA 1359 1_555 T O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
#
_chem_comp.formula           'C18 H37 N O7' 
_chem_comp.formula_weight    379.489 
_chem_comp.id                2CV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEGA-10 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C12 2CV sing 1 n n 
C9 C1 2CV sing 2 n n 
C12 C15 2CV sing 3 n n 
C15 C18 2CV sing 4 n n 
C18 C21 2CV sing 5 n n 
C21 C24 2CV sing 6 n n 
C24 C27 2CV sing 7 n n 
C27 C30 2CV sing 8 n n 
C30 N33 2CV sing 9 n n 
C30 O34 2CV doub 10 n n 
N33 C35 2CV sing 11 n n 
N33 C36 2CV sing 12 n n 
C35 C60 2CV sing 13 n n 
C36 C37 2CV sing 14 n n 
C37 C40 2CV sing 15 n n 
C37 O47 2CV sing 16 n n 
C40 C41 2CV sing 17 n n 
C40 O49 2CV sing 18 n n 
C41 C42 2CV sing 19 n n 
C41 O51 2CV sing 20 n n 
C42 C43 2CV sing 21 n n 
C42 O53 2CV sing 22 n n 
C43 O44 2CV sing 23 n n 
C60 O63 2CV sing 24 n n 
C1 C0 2CV sing 25 n n 
C9 H91C 2CV sing 26 n n 
C9 H92C 2CV sing 27 n n 
C12 H121 2CV sing 28 n n 
C12 H122 2CV sing 29 n n 
C1 H11C 2CV sing 30 n n 
C1 H12C 2CV sing 31 n n 
C15 H151 2CV sing 32 n n 
C15 H152 2CV sing 33 n n 
C18 H181 2CV sing 34 n n 
C18 H182 2CV sing 35 n n 
C21 H211 2CV sing 36 n n 
C21 H212 2CV sing 37 n n 
C24 H241 2CV sing 38 n n 
C24 H242 2CV sing 39 n n 
C27 H271 2CV sing 40 n n 
C27 H272 2CV sing 41 n n 
C35 H351 2CV sing 42 n n 
C35 H352 2CV sing 43 n n 
C36 H361 2CV sing 44 n n 
C36 H362 2CV sing 45 n n 
C60 H601 2CV sing 46 n n 
C60 H602 2CV sing 47 n n 
C37 H37 2CV sing 48 n n 
C40 H40 2CV sing 49 n n 
O47 H47 2CV sing 50 n n 
C41 H41 2CV sing 51 n n 
O49 H49 2CV sing 52 n n 
C42 H42 2CV sing 53 n n 
O51 H51 2CV sing 54 n n 
C43 H431 2CV sing 55 n n 
C43 H432 2CV sing 56 n n 
O53 H53 2CV sing 57 n n 
O44 H44 2CV sing 58 n n 
O63 H63 2CV sing 59 n n 
C0 H01C 2CV sing 60 n n 
C0 H02C 2CV sing 61 n n 
C0 H03C 2CV sing 62 n n 
#
_atom_sites.entry_id                     2Y00 
_atom_sites.fract_transf_matrix[1][1]    0.011111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004088 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010457 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 A 1 401 401 Y01 Y01 . 
D 2 Y01 A 1 402 402 Y01 Y01 . 
E 3 2CV A 1 501 501 2CV 2CV . 
F 3 2CV A 1 502 502 2CV 2CV . 
G 3 2CV A 1 503 503 2CV 2CV . 
H 3 2CV A 1 504 504 2CV 2CV . 
I 3 2CV A 1 505 505 2CV 2CV . 
J 4 Y00 A 1 601 601 Y00 Y00 . 
K 5 NA A 1 1359 1359 NA NA . 
L 2 Y01 B 1 401 401 Y01 Y01 . 
M 2 Y01 B 1 402 402 Y01 Y01 . 
N 3 2CV B 1 501 501 2CV 2CV . 
O 3 2CV B 1 502 502 2CV 2CV . 
P 3 2CV B 1 503 503 2CV 2CV . 
Q 3 2CV B 1 504 504 2CV 2CV . 
R 3 2CV B 1 505 505 2CV 2CV . 
S 4 Y00 B 1 601 601 Y00 Y00 . 
T 6 HOH A 1 2001 2001 HOH HOH . 
T 6 HOH A 2 2002 2002 HOH HOH . 
T 6 HOH A 3 2003 2003 HOH HOH . 
T 6 HOH A 4 2004 2004 HOH HOH . 
T 6 HOH A 5 2005 2005 HOH HOH . 
T 6 HOH A 6 2006 2006 HOH HOH . 
T 6 HOH A 7 2007 2007 HOH HOH . 
T 6 HOH A 8 2008 2008 HOH HOH . 
T 6 HOH A 9 2009 2009 HOH HOH . 
T 6 HOH A 10 2010 2010 HOH HOH . 
T 6 HOH A 11 2011 2011 HOH HOH . 
T 6 HOH A 12 2012 2012 HOH HOH . 
T 6 HOH A 13 2013 2013 HOH HOH . 
T 6 HOH A 14 2014 2014 HOH HOH . 
T 6 HOH A 15 2015 2015 HOH HOH . 
T 6 HOH A 16 2016 2016 HOH HOH . 
T 6 HOH A 17 2017 2017 HOH HOH . 
T 6 HOH A 18 2018 2018 HOH HOH . 
T 6 HOH A 19 2019 2019 HOH HOH . 
U 6 HOH B 1 2001 2001 HOH HOH . 
U 6 HOH B 2 2002 2002 HOH HOH . 
U 6 HOH B 3 2003 2003 HOH HOH . 
U 6 HOH B 4 2004 2004 HOH HOH . 
U 6 HOH B 5 2005 2005 HOH HOH . 
U 6 HOH B 6 2006 2006 HOH HOH . 
U 6 HOH B 7 2007 2007 HOH HOH . 
U 6 HOH B 8 2008 2008 HOH HOH . 
U 6 HOH B 9 2009 2009 HOH HOH . 
U 6 HOH B 10 2010 2010 HOH HOH . 
U 6 HOH B 11 2011 2011 HOH HOH . 
U 6 HOH B 12 2012 2012 HOH HOH . 
U 6 HOH B 13 2013 2013 HOH HOH . 
U 6 HOH B 14 2014 2014 HOH HOH . 
U 6 HOH B 15 2015 2015 HOH HOH . 
U 6 HOH B 16 2016 2016 HOH HOH . 
U 6 HOH B 17 2017 2017 HOH HOH . 
U 6 HOH B 18 2018 2018 HOH HOH . 
U 6 HOH B 19 2019 2019 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C9 2CV . . . N 3 -3.552 -10.763 15.246 1 16.38 ? C9 2CV 501 B 1 
HETATM 2 C C12 2CV . . . N 3 -3.494 -9.918 13.98 1 16.5 ? C12 2CV 501 B 1 
HETATM 3 C C15 2CV . . . N 3 -4.068 -10.67 12.778 1 21.07 ? C15 2CV 501 B 1 
HETATM 4 C C18 2CV . . . N 3 -3.729 -9.879 11.506 1 27.77 ? C18 2CV 501 B 1 
HETATM 5 C C21 2CV . . . N 3 -4.262 -10.531 10.215 1 29.43 ? C21 2CV 501 B 1 
HETATM 6 C C24 2CV . . . N 3 -3.781 -9.753 8.973 1 31 ? C24 2CV 501 B 1 
HETATM 7 C C27 2CV . . . N 3 -3.784 -10.606 7.69 1 37.25 ? C27 2CV 501 B 1 
HETATM 8 C C30 2CV . . . N 3 -3.242 -9.829 6.475 1 47.77 ? C30 2CV 501 B 1 
HETATM 9 N N33 2CV . . . N 3 -2.555 -10.486 5.508 1 54 ? N33 2CV 501 B 1 
HETATM 10 O O34 2CV . . . N 3 -3.395 -8.611 6.446 1 54.17 ? O34 2CV 501 B 1 
HETATM 11 C C35 2CV . . . N 3 -2.395 -11.955 5.406 1 54.11 ? C35 2CV 501 B 1 
HETATM 12 C C36 2CV . . . N 3 -2.042 -9.755 4.322 1 58.96 ? C36 2CV 501 B 1 
HETATM 13 C C37 2CV . . . N 3 -0.843 -8.855 4.652 1 60.44 ? C37 2CV 501 B 1 
HETATM 14 C C40 2CV . . . N 3 -1.078 -7.439 4.114 1 58.95 ? C40 2CV 501 B 1 
HETATM 15 O O47 2CV . . . N 3 0.345 -9.41 4.076 1 65.1 ? O47 2CV 501 B 1 
HETATM 16 O O49 2CV . . . N 3 -0.594 -7.305 2.77 1 57.54 ? O49 2CV 501 B 1 
HETATM 17 C C60 2CV . . . N 3 -1.716 -12.644 6.58 1 55.29 ? C60 2CV 501 B 1 
HETATM 18 O O63 2CV . . . N 3 -2.39 -13.896 6.734 1 56.29 ? O63 2CV 501 B 1 
HETATM 19 C C1 2CV . . . N 3 -2.801 -10.091 16.388 1 17.09 ? C1 2CV 501 B 1 
HETATM 20 C C0 2CV . . . N 3 -2.988 -10.886 17.683 1 16.46 ? C0 2CV 501 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#