data_2Y00
#
_model_server_result.job_id            7J4yxJAyWaanB_Eb_gKtUg 
_model_server_result.datetime_utc      '2024-11-05 23:20:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y00 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    2Y00 
#
_exptl.entry_id    2Y00 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              301.38 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DOBUTAMINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.2 
_cell.angle_gamma         90 
_cell.entry_id            2Y00 
_cell.length_a            90 
_cell.length_b            60.5 
_cell.length_c            101.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y00 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,T 1 1 
B,L,M,N,O,P,Q,R,S,U 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc1 A O CYS 162 A CYS 192 1_555 K NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc2 A O ASP 165 A ASP 195 1_555 K NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? 
metalc ? metalc3 A O CYS 168 A CYS 198 1_555 K NA NA . A NA 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc4 K NA NA . A NA 1359 1_555 T O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
#
_chem_comp.formula           'C18 H23 N O3' 
_chem_comp.formula_weight    301.38 
_chem_comp.id                Y00 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DOBUTAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C16 Y00 sing 438 n n 
C16 C15 Y00 sing 439 n y 
C16 C17 Y00 doub 440 n y 
C15 C14 Y00 doub 441 n y 
C14 C13 Y00 sing 442 n y 
C17 C18 Y00 sing 443 n y 
C18 C13 Y00 doub 444 n y 
C13 C12 Y00 sing 445 n n 
C12 C11 Y00 sing 446 n n 
C11 C9 Y00 sing 447 n n 
C9 C10 Y00 sing 448 n n 
C9 N1 Y00 sing 449 n n 
N1 C8 Y00 sing 450 n n 
C8 C1 Y00 sing 451 n n 
C1 C2 Y00 sing 452 n n 
C2 C7 Y00 sing 453 n y 
C2 C3 Y00 doub 454 n y 
C7 C6 Y00 doub 455 n y 
C6 O1 Y00 sing 456 n n 
C6 C5 Y00 sing 457 n y 
C5 O2 Y00 sing 458 n n 
C5 C4 Y00 doub 459 n y 
C4 C3 Y00 sing 460 n y 
O3 H3 Y00 sing 461 n n 
C15 H15 Y00 sing 462 n n 
C17 H17 Y00 sing 463 n n 
C14 H14 Y00 sing 464 n n 
C18 H18 Y00 sing 465 n n 
C12 H121 Y00 sing 466 n n 
C12 H122 Y00 sing 467 n n 
C11 H111 Y00 sing 468 n n 
C11 H112 Y00 sing 469 n n 
C9 H9 Y00 sing 470 n n 
C10 H101 Y00 sing 471 n n 
C10 H102 Y00 sing 472 n n 
C10 H103 Y00 sing 473 n n 
N1 H1 Y00 sing 474 n n 
C8 H81C Y00 sing 475 n n 
C8 H82C Y00 sing 476 n n 
C1 H11C Y00 sing 477 n n 
C1 H12C Y00 sing 478 n n 
C7 H7 Y00 sing 479 n n 
C3 HA Y00 sing 480 n n 
O1 HB Y00 sing 481 n n 
O2 H2 Y00 sing 482 n n 
C4 H4 Y00 sing 483 n n 
#
_atom_sites.entry_id                     2Y00 
_atom_sites.fract_transf_matrix[1][1]    0.011111 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004088 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010457 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 A 1 401 401 Y01 Y01 . 
D 2 Y01 A 1 402 402 Y01 Y01 . 
E 3 2CV A 1 501 501 2CV 2CV . 
F 3 2CV A 1 502 502 2CV 2CV . 
G 3 2CV A 1 503 503 2CV 2CV . 
H 3 2CV A 1 504 504 2CV 2CV . 
I 3 2CV A 1 505 505 2CV 2CV . 
J 4 Y00 A 1 601 601 Y00 Y00 . 
K 5 NA A 1 1359 1359 NA NA . 
L 2 Y01 B 1 401 401 Y01 Y01 . 
M 2 Y01 B 1 402 402 Y01 Y01 . 
N 3 2CV B 1 501 501 2CV 2CV . 
O 3 2CV B 1 502 502 2CV 2CV . 
P 3 2CV B 1 503 503 2CV 2CV . 
Q 3 2CV B 1 504 504 2CV 2CV . 
R 3 2CV B 1 505 505 2CV 2CV . 
S 4 Y00 B 1 601 601 Y00 Y00 . 
T 6 HOH A 1 2001 2001 HOH HOH . 
T 6 HOH A 2 2002 2002 HOH HOH . 
T 6 HOH A 3 2003 2003 HOH HOH . 
T 6 HOH A 4 2004 2004 HOH HOH . 
T 6 HOH A 5 2005 2005 HOH HOH . 
T 6 HOH A 6 2006 2006 HOH HOH . 
T 6 HOH A 7 2007 2007 HOH HOH . 
T 6 HOH A 8 2008 2008 HOH HOH . 
T 6 HOH A 9 2009 2009 HOH HOH . 
T 6 HOH A 10 2010 2010 HOH HOH . 
T 6 HOH A 11 2011 2011 HOH HOH . 
T 6 HOH A 12 2012 2012 HOH HOH . 
T 6 HOH A 13 2013 2013 HOH HOH . 
T 6 HOH A 14 2014 2014 HOH HOH . 
T 6 HOH A 15 2015 2015 HOH HOH . 
T 6 HOH A 16 2016 2016 HOH HOH . 
T 6 HOH A 17 2017 2017 HOH HOH . 
T 6 HOH A 18 2018 2018 HOH HOH . 
T 6 HOH A 19 2019 2019 HOH HOH . 
U 6 HOH B 1 2001 2001 HOH HOH . 
U 6 HOH B 2 2002 2002 HOH HOH . 
U 6 HOH B 3 2003 2003 HOH HOH . 
U 6 HOH B 4 2004 2004 HOH HOH . 
U 6 HOH B 5 2005 2005 HOH HOH . 
U 6 HOH B 6 2006 2006 HOH HOH . 
U 6 HOH B 7 2007 2007 HOH HOH . 
U 6 HOH B 8 2008 2008 HOH HOH . 
U 6 HOH B 9 2009 2009 HOH HOH . 
U 6 HOH B 10 2010 2010 HOH HOH . 
U 6 HOH B 11 2011 2011 HOH HOH . 
U 6 HOH B 12 2012 2012 HOH HOH . 
U 6 HOH B 13 2013 2013 HOH HOH . 
U 6 HOH B 14 2014 2014 HOH HOH . 
U 6 HOH B 15 2015 2015 HOH HOH . 
U 6 HOH B 16 2016 2016 HOH HOH . 
U 6 HOH B 17 2017 2017 HOH HOH . 
U 6 HOH B 18 2018 2018 HOH HOH . 
U 6 HOH B 19 2019 2019 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3 Y00 . . . J 4 -33.766 -16.835 25.314 1 59.34 ? O3 Y00 601 A 1 
HETATM 2 C C16 Y00 . . . J 4 -32.466 -16.457 25.226 1 52.46 ? C16 Y00 601 A 1 
HETATM 3 C C15 Y00 . . . J 4 -31.525 -17.063 26.061 1 49.05 ? C15 Y00 601 A 1 
HETATM 4 C C14 Y00 . . . J 4 -30.186 -16.685 25.985 1 47.15 ? C14 Y00 601 A 1 
HETATM 5 C C17 Y00 . . . J 4 -32.084 -15.473 24.307 1 50.02 ? C17 Y00 601 A 1 
HETATM 6 C C18 Y00 . . . J 4 -30.737 -15.088 24.229 1 46.44 ? C18 Y00 601 A 1 
HETATM 7 C C13 Y00 . . . J 4 -29.788 -15.7 25.067 1 46.09 ? C13 Y00 601 A 1 
HETATM 8 C C12 Y00 . . . J 4 -28.33 -15.285 24.983 1 39.36 ? C12 Y00 601 A 1 
HETATM 9 C C11 Y00 . . . J 4 -27.419 -16.487 25.155 1 29.22 ? C11 Y00 601 A 1 
HETATM 10 C C9 Y00 . . . J 4 -25.98 -16.253 24.708 1 29.02 ? C9 Y00 601 A 1 
HETATM 11 C C10 Y00 . . . J 4 -25.793 -16.826 23.303 1 33.41 ? C10 Y00 601 A 1 
HETATM 12 N N1 Y00 . . . J 4 -25.536 -14.869 24.825 1 27.52 ? N1 Y00 601 A 1 
HETATM 13 C C8 Y00 . . . J 4 -24.116 -14.586 25.04 1 28.01 ? C8 Y00 601 A 1 
HETATM 14 C C1 Y00 . . . J 4 -23.887 -13.091 25.282 1 31.02 ? C1 Y00 601 A 1 
HETATM 15 C C2 Y00 . . . J 4 -22.448 -12.663 25.514 1 32.62 ? C2 Y00 601 A 1 
HETATM 16 C C7 Y00 . . . J 4 -21.786 -13.028 26.686 1 35.86 ? C7 Y00 601 A 1 
HETATM 17 C C6 Y00 . . . J 4 -20.467 -12.622 26.918 1 35.34 ? C6 Y00 601 A 1 
HETATM 18 O O1 Y00 . . . J 4 -19.803 -12.981 28.061 1 35.92 ? O1 Y00 601 A 1 
HETATM 19 C C5 Y00 . . . J 4 -19.785 -11.79 25.904 1 34.36 ? C5 Y00 601 A 1 
HETATM 20 O O2 Y00 . . . J 4 -18.493 -11.395 26.121 1 38.11 ? O2 Y00 601 A 1 
HETATM 21 C C4 Y00 . . . J 4 -20.478 -11.432 24.749 1 31.67 ? C4 Y00 601 A 1 
HETATM 22 C C3 Y00 . . . J 4 -21.796 -11.865 24.568 1 33.71 ? C3 Y00 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#