data_2Y01 # _model_server_result.job_id RPWw98XWrEq6YSsjreo4nA _model_server_result.datetime_utc '2024-11-05 23:06:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y01 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2Y01 # _exptl.entry_id 2Y01 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEGA-10 _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.9 _cell.angle_gamma 90 _cell.entry_id 2Y01 _cell.length_a 90.1 _cell.length_b 61.6 _cell.length_c 101.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y01 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,S 1 1 B,K,L,M,N,O,P,Q,R,T 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C18 H37 N O7' _chem_comp.formula_weight 379.489 _chem_comp.id 2CV _chem_comp.mon_nstd_flag . _chem_comp.name HEGA-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C12 2CV sing 1 n n C9 C1 2CV sing 2 n n C12 C15 2CV sing 3 n n C15 C18 2CV sing 4 n n C18 C21 2CV sing 5 n n C21 C24 2CV sing 6 n n C24 C27 2CV sing 7 n n C27 C30 2CV sing 8 n n C30 N33 2CV sing 9 n n C30 O34 2CV doub 10 n n N33 C35 2CV sing 11 n n N33 C36 2CV sing 12 n n C35 C60 2CV sing 13 n n C36 C37 2CV sing 14 n n C37 C40 2CV sing 15 n n C37 O47 2CV sing 16 n n C40 C41 2CV sing 17 n n C40 O49 2CV sing 18 n n C41 C42 2CV sing 19 n n C41 O51 2CV sing 20 n n C42 C43 2CV sing 21 n n C42 O53 2CV sing 22 n n C43 O44 2CV sing 23 n n C60 O63 2CV sing 24 n n C1 C0 2CV sing 25 n n C9 H91C 2CV sing 26 n n C9 H92C 2CV sing 27 n n C12 H121 2CV sing 28 n n C12 H122 2CV sing 29 n n C1 H11C 2CV sing 30 n n C1 H12C 2CV sing 31 n n C15 H151 2CV sing 32 n n C15 H152 2CV sing 33 n n C18 H181 2CV sing 34 n n C18 H182 2CV sing 35 n n C21 H211 2CV sing 36 n n C21 H212 2CV sing 37 n n C24 H241 2CV sing 38 n n C24 H242 2CV sing 39 n n C27 H271 2CV sing 40 n n C27 H272 2CV sing 41 n n C35 H351 2CV sing 42 n n C35 H352 2CV sing 43 n n C36 H361 2CV sing 44 n n C36 H362 2CV sing 45 n n C60 H601 2CV sing 46 n n C60 H602 2CV sing 47 n n C37 H37 2CV sing 48 n n C40 H40 2CV sing 49 n n O47 H47 2CV sing 50 n n C41 H41 2CV sing 51 n n O49 H49 2CV sing 52 n n C42 H42 2CV sing 53 n n O51 H51 2CV sing 54 n n C43 H431 2CV sing 55 n n C43 H432 2CV sing 56 n n O53 H53 2CV sing 57 n n O44 H44 2CV sing 58 n n O63 H63 2CV sing 59 n n C0 H01C 2CV sing 60 n n C0 H02C 2CV sing 61 n n C0 H03C 2CV sing 62 n n # _atom_sites.entry_id 2Y01 _atom_sites.fract_transf_matrix[1][1] 0.011099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0038 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 401 401 Y01 Y01 . D 2 Y01 A 1 402 402 Y01 Y01 . E 3 2CV A 1 501 501 2CV 2CV . F 3 2CV A 1 502 502 2CV 2CV . G 3 2CV A 1 503 503 2CV 2CV . H 3 2CV A 1 504 504 2CV 2CV . I 3 2CV A 1 505 505 2CV 2CV . J 4 Y00 A 1 601 601 Y00 Y00 . K 2 Y01 B 1 401 401 Y01 Y01 . L 2 Y01 B 1 402 402 Y01 Y01 . M 3 2CV B 1 501 501 2CV 2CV . N 3 2CV B 1 502 502 2CV 2CV . O 3 2CV B 1 503 503 2CV 2CV . P 3 2CV B 1 504 504 2CV 2CV . Q 3 2CV B 1 505 505 2CV 2CV . R 4 Y00 B 1 601 601 Y00 Y00 . S 5 HOH A 1 2001 2001 HOH HOH . S 5 HOH A 2 2002 2002 HOH HOH . S 5 HOH A 3 2003 2003 HOH HOH . S 5 HOH A 4 2004 2004 HOH HOH . S 5 HOH A 5 2005 2005 HOH HOH . S 5 HOH A 6 2006 2006 HOH HOH . S 5 HOH A 7 2007 2007 HOH HOH . S 5 HOH A 8 2008 2008 HOH HOH . S 5 HOH A 9 2009 2009 HOH HOH . S 5 HOH A 10 2010 2010 HOH HOH . S 5 HOH A 11 2011 2011 HOH HOH . S 5 HOH A 12 2012 2012 HOH HOH . S 5 HOH A 13 2013 2013 HOH HOH . S 5 HOH A 14 2014 2014 HOH HOH . S 5 HOH A 15 2015 2015 HOH HOH . S 5 HOH A 16 2016 2016 HOH HOH . S 5 HOH A 17 2017 2017 HOH HOH . S 5 HOH A 18 2018 2018 HOH HOH . S 5 HOH A 19 2019 2019 HOH HOH . S 5 HOH A 20 2020 2020 HOH HOH . T 5 HOH B 1 2001 2001 HOH HOH . T 5 HOH B 2 2002 2002 HOH HOH . T 5 HOH B 3 2003 2003 HOH HOH . T 5 HOH B 4 2004 2004 HOH HOH . T 5 HOH B 5 2005 2005 HOH HOH . T 5 HOH B 6 2006 2006 HOH HOH . T 5 HOH B 7 2007 2007 HOH HOH . T 5 HOH B 8 2008 2008 HOH HOH . T 5 HOH B 9 2009 2009 HOH HOH . T 5 HOH B 10 2010 2010 HOH HOH . T 5 HOH B 11 2011 2011 HOH HOH . T 5 HOH B 12 2012 2012 HOH HOH . T 5 HOH B 13 2013 2013 HOH HOH . T 5 HOH B 14 2014 2014 HOH HOH . T 5 HOH B 15 2015 2015 HOH HOH . T 5 HOH B 16 2016 2016 HOH HOH . T 5 HOH B 17 2017 2017 HOH HOH . T 5 HOH B 18 2018 2018 HOH HOH . T 5 HOH B 19 2019 2019 HOH HOH . T 5 HOH B 20 2020 2020 HOH HOH . T 5 HOH B 21 2021 2021 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 2CV . . . E 3 -10.559 -16.29 28.405 1 23.27 ? C9 2CV 501 A 1 HETATM 2 C C12 2CV . . . E 3 -10.814 -16.688 29.857 1 28.62 ? C12 2CV 501 A 1 HETATM 3 C C15 2CV . . . E 3 -9.963 -17.864 30.298 1 26.52 ? C15 2CV 501 A 1 HETATM 4 C C18 2CV . . . E 3 -10.41 -18.31 31.665 1 31.12 ? C18 2CV 501 A 1 HETATM 5 C C21 2CV . . . E 3 -9.742 -19.638 31.992 1 37.63 ? C21 2CV 501 A 1 HETATM 6 C C24 2CV . . . E 3 -9.772 -19.903 33.49 1 39.04 ? C24 2CV 501 A 1 HETATM 7 C C27 2CV . . . E 3 -10.265 -21.315 33.738 1 41.79 ? C27 2CV 501 A 1 HETATM 8 C C30 2CV . . . E 3 -10.693 -21.495 35.199 1 47.27 ? C30 2CV 501 A 1 HETATM 9 N N33 2CV . . . E 3 -11.418 -22.592 35.505 1 50.25 ? N33 2CV 501 A 1 HETATM 10 O O34 2CV . . . E 3 -10.41 -20.614 36.009 1 51.45 ? O34 2CV 501 A 1 HETATM 11 C C35 2CV . . . E 3 -11.64 -23.71 34.565 1 55.08 ? C35 2CV 501 A 1 HETATM 12 C C36 2CV . . . E 3 -11.816 -22.955 36.893 1 54.42 ? C36 2CV 501 A 1 HETATM 13 C C37 2CV . . . E 3 -12.657 -21.948 37.727 1 55.97 ? C37 2CV 501 A 1 HETATM 14 C C40 2CV . . . E 3 -13.912 -22.604 38.321 1 61 ? C40 2CV 501 A 1 HETATM 15 C C41 2CV . . . E 3 -13.647 -23.349 39.642 1 64.19 ? C41 2CV 501 A 1 HETATM 16 C C42 2CV . . . E 3 -14.548 -22.857 40.79 1 70.31 ? C42 2CV 501 A 1 HETATM 17 C C43 2CV . . . E 3 -14.422 -21.349 41.081 1 73.52 ? C43 2CV 501 A 1 HETATM 18 O O44 2CV . . . E 3 -13.081 -21.022 41.464 1 74.13 ? O44 2CV 501 A 1 HETATM 19 O O47 2CV . . . E 3 -13.06 -20.815 36.974 1 47.9 ? O47 2CV 501 A 1 HETATM 20 O O49 2CV . . . E 3 -14.473 -23.523 37.372 1 64.24 ? O49 2CV 501 A 1 HETATM 21 O O51 2CV . . . E 3 -12.277 -23.28 40.03 1 63.13 ? O51 2CV 501 A 1 HETATM 22 O O53 2CV . . . E 3 -14.25 -23.615 41.974 1 73.69 ? O53 2CV 501 A 1 HETATM 23 C C60 2CV . . . E 3 -12.447 -23.428 33.314 1 57.27 ? C60 2CV 501 A 1 HETATM 24 O O63 2CV . . . E 3 -11.842 -24.243 32.309 1 57.84 ? O63 2CV 501 A 1 HETATM 25 C C1 2CV . . . E 3 -11.52 -15.162 28.07 1 25.42 ? C1 2CV 501 A 1 HETATM 26 C C0 2CV . . . E 3 -10.974 -14.283 26.944 1 29.09 ? C0 2CV 501 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 26 #