data_2Y03 # _model_server_result.job_id FJIqItY-9nPt5l6-r7FNyA _model_server_result.datetime_utc '2024-11-22 11:30:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 2Y03 # _exptl.entry_id 2Y03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.7 _cell.angle_gamma 90 _cell.entry_id 2Y03 _cell.length_a 89.7 _cell.length_b 61.6 _cell.length_c 101.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc1 A O CYS 162 A CYS 192 1_555 H NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc2 A O ASP 165 A ASP 195 1_555 H NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc3 A O CYS 168 A CYS 198 1_555 H NA NA . A NA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 470 n n CBA CAB Y01 sing 471 n n CBA CAN Y01 sing 472 n n CAN CAJ Y01 sing 473 n n CAJ CAO Y01 sing 474 n n CAO CBB Y01 sing 475 n n CBB CAC Y01 sing 476 n n CBB CBE Y01 sing 477 n n CBE CAP Y01 sing 478 n n CBE CBI Y01 sing 479 n n CAP CAQ Y01 sing 480 n n CAQ CBG Y01 sing 481 n n CBG CBI Y01 sing 482 n n CBG CBD Y01 sing 483 n n CBI CAE Y01 sing 484 n n CBI CAU Y01 sing 485 n n CAU CAS Y01 sing 486 n n CAS CBF Y01 sing 487 n n CBF CBD Y01 sing 488 n n CBF CBH Y01 sing 489 n n CBD CAK Y01 sing 490 n n CAK CAI Y01 sing 491 n n CAI CAZ Y01 doub 492 n n CAZ CAV Y01 sing 493 n n CAZ CBH Y01 sing 494 n n CAV CBC Y01 sing 495 n n CBH CAD Y01 sing 496 n n CBH CAT Y01 sing 497 n n CAT CAR Y01 sing 498 n n CAR CBC Y01 sing 499 n n CBC OAW Y01 sing 500 n n OAW CAY Y01 sing 501 n n CAY OAG Y01 doub 502 n n CAY CAM Y01 sing 503 n n CAM CAL Y01 sing 504 n n CAL CAX Y01 sing 505 n n CAX OAH Y01 sing 506 n n CAX OAF Y01 doub 507 n n CAA HAA1 Y01 sing 508 n n CAA HAA2 Y01 sing 509 n n CAA HAA3 Y01 sing 510 n n CBA HBA Y01 sing 511 n n CAB HAB1 Y01 sing 512 n n CAB HAB2 Y01 sing 513 n n CAB HAB3 Y01 sing 514 n n CAN HAN1 Y01 sing 515 n n CAN HAN2 Y01 sing 516 n n CAJ HAJ1 Y01 sing 517 n n CAJ HAJ2 Y01 sing 518 n n CAO HAO1 Y01 sing 519 n n CAO HAO2 Y01 sing 520 n n CBB HBB Y01 sing 521 n n CAC HAC1 Y01 sing 522 n n CAC HAC2 Y01 sing 523 n n CAC HAC3 Y01 sing 524 n n CBE HBE Y01 sing 525 n n CAP HAP1 Y01 sing 526 n n CAP HAP2 Y01 sing 527 n n CAQ HAQ1 Y01 sing 528 n n CAQ HAQ2 Y01 sing 529 n n CBG HBG Y01 sing 530 n n CBD HBD Y01 sing 531 n n CAE HAE1 Y01 sing 532 n n CAE HAE2 Y01 sing 533 n n CAE HAE3 Y01 sing 534 n n CAU HAU1 Y01 sing 535 n n CAU HAU2 Y01 sing 536 n n CAS HAS1 Y01 sing 537 n n CAS HAS2 Y01 sing 538 n n CBF HBF Y01 sing 539 n n CAK HAK1 Y01 sing 540 n n CAK HAK2 Y01 sing 541 n n CAI HAI Y01 sing 542 n n CAV HAV1 Y01 sing 543 n n CAV HAV2 Y01 sing 544 n n CBC HBC Y01 sing 545 n n CAD HAD1 Y01 sing 546 n n CAD HAD2 Y01 sing 547 n n CAD HAD3 Y01 sing 548 n n CAT HAT1 Y01 sing 549 n n CAT HAT2 Y01 sing 550 n n CAR HAR1 Y01 sing 551 n n CAR HAR2 Y01 sing 552 n n CAM HAM1 Y01 sing 553 n n CAM HAM2 Y01 sing 554 n n CAL HAL1 Y01 sing 555 n n CAL HAL2 Y01 sing 556 n n OAH HAH Y01 sing 557 n n # _atom_sites.entry_id 2Y03 _atom_sites.fract_transf_matrix[1][1] 0.011148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003992 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 401 401 Y01 Y01 . D 3 2CV A 1 501 501 2CV 2CV . E 3 2CV A 1 502 502 2CV 2CV . F 3 2CV A 1 503 503 2CV 2CV . G 4 5FW A 1 601 601 5FW 5FW . H 5 NA A 1 701 701 NA NA . I 2 Y01 B 1 401 401 Y01 Y01 . J 3 2CV B 1 501 501 2CV 2CV . K 3 2CV B 1 502 502 2CV 2CV . L 3 2CV B 1 503 503 2CV 2CV . M 4 5FW B 1 601 601 5FW 5FW . N 6 HOH A 1 2002 2002 HOH HOH . N 6 HOH A 2 2003 2003 HOH HOH . N 6 HOH A 3 2004 2004 HOH HOH . N 6 HOH A 4 2005 2005 HOH HOH . N 6 HOH A 5 2006 2006 HOH HOH . N 6 HOH A 6 2007 2007 HOH HOH . O 6 HOH B 1 2001 2001 HOH HOH . O 6 HOH B 2 2002 2002 HOH HOH . O 6 HOH B 3 2003 2003 HOH HOH . O 6 HOH B 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . C 2 -8.317 -5.713 23.529 1 52.65 ? CAA Y01 401 A 1 HETATM 2 C CBA Y01 . . . C 2 -9.13 -6.009 22.276 1 47.15 ? CBA Y01 401 A 1 HETATM 3 C CAB Y01 . . . C 2 -9.031 -7.484 21.981 1 44.62 ? CAB Y01 401 A 1 HETATM 4 C CAN Y01 . . . C 2 -8.631 -5.185 21.1 1 45.48 ? CAN Y01 401 A 1 HETATM 5 C CAJ Y01 . . . C 2 -9.318 -3.82 21.065 1 44.47 ? CAJ Y01 401 A 1 HETATM 6 C CAO Y01 . . . C 2 -8.522 -2.815 20.202 1 46.51 ? CAO Y01 401 A 1 HETATM 7 C CBB Y01 . . . C 2 -9.155 -2.514 18.824 1 45.83 ? CBB Y01 401 A 1 HETATM 8 C CAC Y01 . . . C 2 -10.59 -1.991 18.934 1 48.84 ? CAC Y01 401 A 1 HETATM 9 C CBE Y01 . . . C 2 -8.385 -1.464 17.992 1 45.96 ? CBE Y01 401 A 1 HETATM 10 C CAP Y01 . . . C 2 -7.472 -0.501 18.787 1 44.27 ? CAP Y01 401 A 1 HETATM 11 C CAQ Y01 . . . C 2 -6.556 0.046 17.668 1 43.37 ? CAQ Y01 401 A 1 HETATM 12 C CBG Y01 . . . C 2 -6.941 -0.732 16.397 1 37.55 ? CBG Y01 401 A 1 HETATM 13 C CBI Y01 . . . C 2 -7.426 -2.035 16.964 1 39.29 ? CBI Y01 401 A 1 HETATM 14 C CAE Y01 . . . C 2 -6.275 -2.83 17.607 1 36.66 ? CAE Y01 401 A 1 HETATM 15 C CAU Y01 . . . C 2 -8.157 -2.8 15.855 1 41.85 ? CAU Y01 401 A 1 HETATM 16 C CAS Y01 . . . C 2 -7.236 -3.09 14.644 1 41.87 ? CAS Y01 401 A 1 HETATM 17 C CBF Y01 . . . C 2 -6.31 -1.9 14.221 1 42.1 ? CBF Y01 401 A 1 HETATM 18 C CBD Y01 . . . C 2 -5.809 -1.028 15.41 1 37.96 ? CBD Y01 401 A 1 HETATM 19 C CAK Y01 . . . C 2 -5.136 0.235 14.89 1 38.02 ? CAK Y01 401 A 1 HETATM 20 C CAI Y01 . . . C 2 -4.409 0.014 13.715 1 44.52 ? CAI Y01 401 A 1 HETATM 21 C CAZ Y01 . . . C 2 -4.34 -1.135 12.916 1 46.35 ? CAZ Y01 401 A 1 HETATM 22 C CAV Y01 . . . C 2 -3.487 -1.18 11.614 1 47.51 ? CAV Y01 401 A 1 HETATM 23 C CBH Y01 . . . C 2 -5.122 -2.368 13.362 1 44.43 ? CBH Y01 401 A 1 HETATM 24 C CAD Y01 . . . C 2 -4.104 -3.235 14.133 1 45.75 ? CAD Y01 401 A 1 HETATM 25 C CAT Y01 . . . C 2 -5.674 -3.125 12.154 1 47.65 ? CAT Y01 401 A 1 HETATM 26 C CAR Y01 . . . C 2 -4.687 -3.211 10.987 1 52.03 ? CAR Y01 401 A 1 HETATM 27 C CBC Y01 . . . C 2 -4.399 -1.782 10.495 1 53.97 ? CBC Y01 401 A 1 HETATM 28 O OAW Y01 . . . C 2 -4.095 -1.903 9.05 1 57.57 ? OAW Y01 401 A 1 HETATM 29 C CAY Y01 . . . C 2 -2.827 -1.899 8.575 1 56.66 ? CAY Y01 401 A 1 HETATM 30 O OAG Y01 . . . C 2 -1.885 -1.881 9.364 1 58.9 ? OAG Y01 401 A 1 HETATM 31 C CAM Y01 . . . C 2 -2.606 -1.959 7.056 1 56.13 ? CAM Y01 401 A 1 HETATM 32 C CAL Y01 . . . C 2 -1.104 -1.868 6.741 1 63.85 ? CAL Y01 401 A 1 HETATM 33 C CAX Y01 . . . C 2 -0.588 -2.765 5.59 1 69.01 ? CAX Y01 401 A 1 HETATM 34 O OAH Y01 . . . C 2 -0.093 -2.172 4.61 1 72.53 ? OAH Y01 401 A 1 HETATM 35 O OAF Y01 . . . C 2 -0.606 -4.011 5.737 1 72.05 ? OAF Y01 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 443 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #