data_2Y04 # _model_server_result.job_id VhbXbYhdTXp-pq2-LOthtw _model_server_result.datetime_utc '2024-11-22 21:26:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 2Y04 # _exptl.entry_id 2Y04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.489 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEGA-10 _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.9 _cell.angle_gamma 90 _cell.entry_id 2Y04 _cell.length_a 89.9 _cell.length_b 62 _cell.length_c 101.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,T 1 1 B,L,M,N,O,P,Q,R,S,U 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 84 A CYS 114 1_555 A SG CYS 169 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 162 A CYS 192 1_555 A SG CYS 168 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 B SG CYS 84 B CYS 114 1_555 B SG CYS 169 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 162 B CYS 192 1_555 B SG CYS 168 B CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C18 H37 N O7' _chem_comp.formula_weight 379.489 _chem_comp.id 2CV _chem_comp.mon_nstd_flag . _chem_comp.name HEGA-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C12 2CV sing 1 n n C9 C1 2CV sing 2 n n C12 C15 2CV sing 3 n n C15 C18 2CV sing 4 n n C18 C21 2CV sing 5 n n C21 C24 2CV sing 6 n n C24 C27 2CV sing 7 n n C27 C30 2CV sing 8 n n C30 N33 2CV sing 9 n n C30 O34 2CV doub 10 n n N33 C35 2CV sing 11 n n N33 C36 2CV sing 12 n n C35 C60 2CV sing 13 n n C36 C37 2CV sing 14 n n C37 C40 2CV sing 15 n n C37 O47 2CV sing 16 n n C40 C41 2CV sing 17 n n C40 O49 2CV sing 18 n n C41 C42 2CV sing 19 n n C41 O51 2CV sing 20 n n C42 C43 2CV sing 21 n n C42 O53 2CV sing 22 n n C43 O44 2CV sing 23 n n C60 O63 2CV sing 24 n n C1 C0 2CV sing 25 n n C9 H91C 2CV sing 26 n n C9 H92C 2CV sing 27 n n C12 H121 2CV sing 28 n n C12 H122 2CV sing 29 n n C1 H11C 2CV sing 30 n n C1 H12C 2CV sing 31 n n C15 H151 2CV sing 32 n n C15 H152 2CV sing 33 n n C18 H181 2CV sing 34 n n C18 H182 2CV sing 35 n n C21 H211 2CV sing 36 n n C21 H212 2CV sing 37 n n C24 H241 2CV sing 38 n n C24 H242 2CV sing 39 n n C27 H271 2CV sing 40 n n C27 H272 2CV sing 41 n n C35 H351 2CV sing 42 n n C35 H352 2CV sing 43 n n C36 H361 2CV sing 44 n n C36 H362 2CV sing 45 n n C60 H601 2CV sing 46 n n C60 H602 2CV sing 47 n n C37 H37 2CV sing 48 n n C40 H40 2CV sing 49 n n O47 H47 2CV sing 50 n n C41 H41 2CV sing 51 n n O49 H49 2CV sing 52 n n C42 H42 2CV sing 53 n n O51 H51 2CV sing 54 n n C43 H431 2CV sing 55 n n C43 H432 2CV sing 56 n n O53 H53 2CV sing 57 n n O44 H44 2CV sing 58 n n O63 H63 2CV sing 59 n n C0 H01C 2CV sing 60 n n C0 H02C 2CV sing 61 n n C0 H03C 2CV sing 62 n n # _atom_sites.entry_id 2Y04 _atom_sites.fract_transf_matrix[1][1] 0.011123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 401 401 Y01 Y01 . D 2 Y01 A 1 402 402 Y01 Y01 . E 3 2CV A 1 501 501 2CV 2CV . F 3 2CV A 1 502 502 2CV 2CV . G 3 2CV A 1 503 503 2CV 2CV . H 3 2CV A 1 504 504 2CV 2CV . I 3 2CV A 1 505 505 2CV 2CV . J 4 68H A 1 601 601 68H 68H . K 5 NA A 1 701 701 NA NA . L 2 Y01 B 1 401 401 Y01 Y01 . M 2 Y01 B 1 402 402 Y01 Y01 . N 3 2CV B 1 501 501 2CV 2CV . O 3 2CV B 1 502 502 2CV 2CV . P 3 2CV B 1 503 503 2CV 2CV . Q 3 2CV B 1 504 504 2CV 2CV . R 3 2CV B 1 505 505 2CV 2CV . S 4 68H B 1 601 601 68H 68H . T 6 HOH A 1 2001 2001 HOH HOH . T 6 HOH A 2 2002 2002 HOH HOH . T 6 HOH A 3 2003 2003 HOH HOH . T 6 HOH A 4 2004 2004 HOH HOH . T 6 HOH A 5 2005 2005 HOH HOH . T 6 HOH A 6 2006 2006 HOH HOH . T 6 HOH A 7 2007 2007 HOH HOH . T 6 HOH A 8 2008 2008 HOH HOH . T 6 HOH A 9 2009 2009 HOH HOH . T 6 HOH A 10 2010 2010 HOH HOH . U 6 HOH B 1 2001 2001 HOH HOH . U 6 HOH B 2 2002 2002 HOH HOH . U 6 HOH B 3 2003 2003 HOH HOH . U 6 HOH B 4 2004 2004 HOH HOH . U 6 HOH B 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 2CV . . . E 3 -11.045 -16.34 28.497 1 22.87 ? C9 2CV 501 A 1 HETATM 2 C C12 2CV . . . E 3 -11.6 -17.134 29.682 1 25.71 ? C12 2CV 501 A 1 HETATM 3 C C15 2CV . . . E 3 -10.522 -18.098 30.181 1 28.21 ? C15 2CV 501 A 1 HETATM 4 C C18 2CV . . . E 3 -10.66 -18.382 31.673 1 32.48 ? C18 2CV 501 A 1 HETATM 5 C C21 2CV . . . E 3 -10.309 -19.847 31.986 1 39.1 ? C21 2CV 501 A 1 HETATM 6 C C24 2CV . . . E 3 -10.133 -20.058 33.496 1 44.28 ? C24 2CV 501 A 1 HETATM 7 C C27 2CV . . . E 3 -10.21 -21.53 33.898 1 49.26 ? C27 2CV 501 A 1 HETATM 8 C C30 2CV . . . E 3 -11.324 -21.754 34.941 1 54.87 ? C30 2CV 501 A 1 HETATM 9 N N33 2CV . . . E 3 -11.845 -22.993 35.04 1 60.05 ? N33 2CV 501 A 1 HETATM 10 O O34 2CV . . . E 3 -11.68 -20.812 35.64 1 57.61 ? O34 2CV 501 A 1 HETATM 11 C C35 2CV . . . E 3 -11.398 -24.117 34.184 1 61.13 ? C35 2CV 501 A 1 HETATM 12 C C36 2CV . . . E 3 -12.942 -23.36 35.968 1 64.51 ? C36 2CV 501 A 1 HETATM 13 C C37 2CV . . . E 3 -12.887 -22.889 37.431 1 67.29 ? C37 2CV 501 A 1 HETATM 14 C C40 2CV . . . E 3 -14.045 -23.577 38.172 1 71.21 ? C40 2CV 501 A 1 HETATM 15 C C41 2CV . . . E 3 -13.809 -23.898 39.668 1 72.07 ? C41 2CV 501 A 1 HETATM 16 C C42 2CV . . . E 3 -14.791 -23.125 40.587 1 75.33 ? C42 2CV 501 A 1 HETATM 17 C C43 2CV . . . E 3 -14.493 -21.606 40.752 1 77.68 ? C43 2CV 501 A 1 HETATM 18 O O44 2CV . . . E 3 -13.403 -21.348 41.651 1 78.46 ? O44 2CV 501 A 1 HETATM 19 O O47 2CV . . . E 3 -13.118 -21.479 37.495 1 66.2 ? O47 2CV 501 A 1 HETATM 20 O O49 2CV . . . E 3 -14.386 -24.8 37.492 1 75.2 ? O49 2CV 501 A 1 HETATM 21 O O51 2CV . . . E 3 -12.432 -23.799 40.077 1 69.65 ? O51 2CV 501 A 1 HETATM 22 O O53 2CV . . . E 3 -14.894 -23.803 41.854 1 76.35 ? O53 2CV 501 A 1 HETATM 23 C C60 2CV . . . E 3 -12.121 -24.211 32.841 1 57.14 ? C60 2CV 501 A 1 HETATM 24 O O63 2CV . . . E 3 -11.098 -24.391 31.868 1 55.65 ? O63 2CV 501 A 1 HETATM 25 C C1 2CV . . . E 3 -12.143 -15.898 27.532 1 17.61 ? C1 2CV 501 A 1 HETATM 26 C C0 2CV . . . E 3 -11.558 -14.946 26.483 1 13.23 ? C0 2CV 501 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #