data_2Y0F # _model_server_result.job_id BLyEJ4-p977kzmKdRFQTHw _model_server_result.datetime_utc '2024-10-19 16:38:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 2Y0F # _exptl.entry_id 2Y0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.1 _cell.angle_gamma 90 _cell.entry_id 2Y0F _cell.length_a 84.5 _cell.length_b 130.97 _cell.length_c 101.26 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,G,H,K,L 1 1 A,B,E,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 297 A CYS 297 1_555 E FE4 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc2 A SG CYS 300 A CYS 300 1_555 E FE3 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc3 A SG CYS 343 A CYS 343 1_555 E FE1 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc4 A OE1 GLU 350 A GLU 350 1_555 E FE2 SF4 . A SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc5 B SG CYS 297 B CYS 297 1_555 F FE3 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc6 B SG CYS 300 B CYS 300 1_555 F FE2 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc7 B SG CYS 343 B CYS 343 1_555 F FE1 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc8 B OE1 GLU 350 B GLU 350 1_555 F FE4 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc9 B OE2 GLU 350 B GLU 350 1_555 F FE4 SF4 . B SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc10 C SG CYS 297 C CYS 297 1_555 G FE3 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc11 C SG CYS 300 C CYS 300 1_555 G FE2 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc12 C SG CYS 343 C CYS 343 1_555 G FE1 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc13 C OE1 GLU 350 C GLU 350 1_555 G FE4 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc14 C OE2 GLU 350 C GLU 350 1_555 G FE4 SF4 . C SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc15 D SG CYS 297 D CYS 297 1_555 H FE1 SF4 . D SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc16 D SG CYS 300 D CYS 300 1_555 H FE3 SF4 . D SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc17 D SG CYS 343 D CYS 343 1_555 H FE2 SF4 . D SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc18 D OE1 GLU 350 D GLU 350 1_555 H FE4 SF4 . D SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc19 D OE2 GLU 350 D GLU 350 1_555 H FE4 SF4 . D SF4 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 290 n n FE1 S3 SF4 sing 291 n n FE1 S4 SF4 sing 292 n n FE2 S1 SF4 sing 293 n n FE2 S3 SF4 sing 294 n n FE2 S4 SF4 sing 295 n n FE3 S1 SF4 sing 296 n n FE3 S2 SF4 sing 297 n n FE3 S4 SF4 sing 298 n n FE4 S1 SF4 sing 299 n n FE4 S2 SF4 sing 300 n n FE4 S3 SF4 sing 301 n n # _atom_sites.entry_id 2Y0F _atom_sites.fract_transf_matrix[1][1] 0.011834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002537 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SF4 A 1 501 501 SF4 SF4 . F 2 SF4 B 1 501 501 SF4 SF4 . G 2 SF4 C 1 501 501 SF4 SF4 . H 2 SF4 D 1 501 501 SF4 SF4 . I 3 HOH A 1 2001 2001 HOH HOH . I 3 HOH A 2 2002 2002 HOH HOH . I 3 HOH A 3 2003 2003 HOH HOH . I 3 HOH A 4 2004 2004 HOH HOH . I 3 HOH A 5 2005 2005 HOH HOH . I 3 HOH A 6 2006 2006 HOH HOH . I 3 HOH A 7 2007 2007 HOH HOH . I 3 HOH A 8 2008 2008 HOH HOH . I 3 HOH A 9 2009 2009 HOH HOH . I 3 HOH A 10 2010 2010 HOH HOH . I 3 HOH A 11 2011 2011 HOH HOH . I 3 HOH A 12 2012 2012 HOH HOH . I 3 HOH A 13 2013 2013 HOH HOH . I 3 HOH A 14 2014 2014 HOH HOH . I 3 HOH A 15 2015 2015 HOH HOH . I 3 HOH A 16 2016 2016 HOH HOH . I 3 HOH A 17 2017 2017 HOH HOH . I 3 HOH A 18 2018 2018 HOH HOH . I 3 HOH A 19 2019 2019 HOH HOH . I 3 HOH A 20 2020 2020 HOH HOH . I 3 HOH A 21 2021 2021 HOH HOH . I 3 HOH A 22 2022 2022 HOH HOH . I 3 HOH A 23 2023 2023 HOH HOH . I 3 HOH A 24 2024 2024 HOH HOH . I 3 HOH A 25 2025 2025 HOH HOH . I 3 HOH A 26 2026 2026 HOH HOH . I 3 HOH A 27 2027 2027 HOH HOH . I 3 HOH A 28 2028 2028 HOH HOH . I 3 HOH A 29 2029 2029 HOH HOH . I 3 HOH A 30 2030 2030 HOH HOH . I 3 HOH A 31 2031 2031 HOH HOH . I 3 HOH A 32 2032 2032 HOH HOH . I 3 HOH A 33 2033 2033 HOH HOH . I 3 HOH A 34 2034 2034 HOH HOH . I 3 HOH A 35 2035 2035 HOH HOH . I 3 HOH A 36 2036 2036 HOH HOH . I 3 HOH A 37 2037 2037 HOH HOH . I 3 HOH A 38 2038 2038 HOH HOH . I 3 HOH A 39 2039 2039 HOH HOH . I 3 HOH A 40 2040 2040 HOH HOH . I 3 HOH A 41 2041 2041 HOH HOH . I 3 HOH A 42 2042 2042 HOH HOH . I 3 HOH A 43 2043 2043 HOH HOH . I 3 HOH A 44 2044 2044 HOH HOH . I 3 HOH A 45 2045 2045 HOH HOH . I 3 HOH A 46 2046 2046 HOH HOH . I 3 HOH A 47 2047 2047 HOH HOH . I 3 HOH A 48 2048 2048 HOH HOH . I 3 HOH A 49 2049 2049 HOH HOH . I 3 HOH A 50 2050 2050 HOH HOH . I 3 HOH A 51 2051 2051 HOH HOH . I 3 HOH A 52 2052 2052 HOH HOH . I 3 HOH A 53 2053 2053 HOH HOH . I 3 HOH A 54 2054 2054 HOH HOH . I 3 HOH A 55 2055 2055 HOH HOH . I 3 HOH A 56 2056 2056 HOH HOH . J 3 HOH B 1 2001 2001 HOH HOH . J 3 HOH B 2 2002 2002 HOH HOH . J 3 HOH B 3 2003 2003 HOH HOH . J 3 HOH B 4 2004 2004 HOH HOH . J 3 HOH B 5 2005 2005 HOH HOH . J 3 HOH B 6 2006 2006 HOH HOH . J 3 HOH B 7 2007 2007 HOH HOH . J 3 HOH B 8 2008 2008 HOH HOH . J 3 HOH B 9 2009 2009 HOH HOH . J 3 HOH B 10 2010 2010 HOH HOH . J 3 HOH B 11 2011 2011 HOH HOH . J 3 HOH B 12 2012 2012 HOH HOH . J 3 HOH B 13 2013 2013 HOH HOH . J 3 HOH B 14 2014 2014 HOH HOH . J 3 HOH B 15 2015 2015 HOH HOH . J 3 HOH B 16 2016 2016 HOH HOH . J 3 HOH B 17 2017 2017 HOH HOH . J 3 HOH B 18 2018 2018 HOH HOH . J 3 HOH B 19 2019 2019 HOH HOH . J 3 HOH B 20 2020 2020 HOH HOH . J 3 HOH B 21 2021 2021 HOH HOH . J 3 HOH B 22 2022 2022 HOH HOH . J 3 HOH B 23 2023 2023 HOH HOH . J 3 HOH B 24 2024 2024 HOH HOH . J 3 HOH B 25 2025 2025 HOH HOH . J 3 HOH B 26 2026 2026 HOH HOH . J 3 HOH B 27 2027 2027 HOH HOH . J 3 HOH B 28 2028 2028 HOH HOH . J 3 HOH B 29 2029 2029 HOH HOH . J 3 HOH B 30 2030 2030 HOH HOH . J 3 HOH B 31 2031 2031 HOH HOH . J 3 HOH B 32 2032 2032 HOH HOH . J 3 HOH B 33 2033 2033 HOH HOH . J 3 HOH B 34 2034 2034 HOH HOH . J 3 HOH B 35 2035 2035 HOH HOH . K 3 HOH C 1 2001 2001 HOH HOH . K 3 HOH C 2 2002 2002 HOH HOH . K 3 HOH C 3 2003 2003 HOH HOH . K 3 HOH C 4 2004 2004 HOH HOH . K 3 HOH C 5 2005 2005 HOH HOH . K 3 HOH C 6 2006 2006 HOH HOH . K 3 HOH C 7 2007 2007 HOH HOH . K 3 HOH C 8 2008 2008 HOH HOH . K 3 HOH C 9 2009 2009 HOH HOH . K 3 HOH C 10 2010 2010 HOH HOH . K 3 HOH C 11 2011 2011 HOH HOH . K 3 HOH C 12 2012 2012 HOH HOH . K 3 HOH C 13 2013 2013 HOH HOH . K 3 HOH C 14 2014 2014 HOH HOH . K 3 HOH C 15 2015 2015 HOH HOH . K 3 HOH C 16 2016 2016 HOH HOH . K 3 HOH C 17 2017 2017 HOH HOH . K 3 HOH C 18 2018 2018 HOH HOH . K 3 HOH C 19 2019 2019 HOH HOH . K 3 HOH C 20 2020 2020 HOH HOH . K 3 HOH C 21 2021 2021 HOH HOH . K 3 HOH C 22 2022 2022 HOH HOH . K 3 HOH C 23 2023 2023 HOH HOH . K 3 HOH C 24 2024 2024 HOH HOH . K 3 HOH C 25 2025 2025 HOH HOH . K 3 HOH C 26 2026 2026 HOH HOH . K 3 HOH C 27 2027 2027 HOH HOH . K 3 HOH C 28 2028 2028 HOH HOH . L 3 HOH D 1 2001 2001 HOH HOH . L 3 HOH D 2 2002 2002 HOH HOH . L 3 HOH D 3 2003 2003 HOH HOH . L 3 HOH D 4 2004 2004 HOH HOH . L 3 HOH D 5 2005 2005 HOH HOH . L 3 HOH D 6 2006 2006 HOH HOH . L 3 HOH D 7 2007 2007 HOH HOH . L 3 HOH D 8 2008 2008 HOH HOH . L 3 HOH D 9 2009 2009 HOH HOH . L 3 HOH D 10 2010 2010 HOH HOH . L 3 HOH D 11 2011 2011 HOH HOH . L 3 HOH D 12 2012 2012 HOH HOH . L 3 HOH D 13 2013 2013 HOH HOH . L 3 HOH D 14 2014 2014 HOH HOH . L 3 HOH D 15 2015 2015 HOH HOH . L 3 HOH D 16 2016 2016 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . F 2 57.235 -25.136 -7.86 1 69.19 ? FE1 SF4 501 B 1 HETATM 2 FE FE2 SF4 . . . F 2 56.139 -23.256 -6.277 1 65.96 ? FE2 SF4 501 B 1 HETATM 3 FE FE3 SF4 . . . F 2 54.748 -24.387 -8.353 1 67 ? FE3 SF4 501 B 1 HETATM 4 FE FE4 SF4 . . . F 2 55.324 -25.854 -6.057 1 68.63 ? FE4 SF4 501 B 1 HETATM 5 S S1 SF4 . . . F 2 53.984 -24.027 -6.214 1 64.8 ? S1 SF4 501 B 1 HETATM 6 S S2 SF4 . . . F 2 55.481 -26.497 -8.304 1 62.44 ? S2 SF4 501 B 1 HETATM 7 S S3 SF4 . . . F 2 57.395 -25.034 -5.58 1 68.85 ? S3 SF4 501 B 1 HETATM 8 S S4 SF4 . . . F 2 56.618 -23.028 -8.517 1 65.97 ? S4 SF4 501 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #