data_2Y0M # _model_server_result.job_id tXIyuZmDp5ezSl1Iy3ZDNQ _model_server_result.datetime_utc '2024-12-21 10:00:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1450}' # _entry.id 2Y0M # _exptl.entry_id 2Y0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Y0M _cell.length_a 180.94 _cell.length_b 180.94 _cell.length_c 80.75 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 8_556 -y,-x,-z+1 0 -1 0 -1 0 0 0 0 -1 0 0 80.75 4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 80.75 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 102 A HIS 273 1_555 A N ALY 103 A ALY 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C ALY 103 A ALY 274 1_555 A N THR 104 A THR 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ALA 144 A ALA 315 1_555 A N CSO 145 A CSO 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C CSO 145 A CSO 316 1_555 A N ILE 146 A ILE 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C ILE 244 A ILE 415 1_555 A N CSO 245 A CSO 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C CSO 245 A CSO 416 1_555 A N VAL 246 A VAL 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A SG CYS 39 A CYS 210 1_555 D ZN ZN . A ZN 1451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc2 A SG CYS 42 A CYS 213 1_555 D ZN ZN . A ZN 1451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc3 A NE2 HIS 55 A HIS 226 1_555 D ZN ZN . A ZN 1451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc4 A SG CYS 59 A CYS 230 1_555 D ZN ZN . A ZN 1451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 2Y0M _atom_sites.fract_transf_matrix[1][1] 0.005527 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACO A 1 1450 1450 ACO ACO . D 4 ZN A 1 1451 1451 ZN ZN . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . C 3 -36.059 -20.115 29.944 1 45.08 ? N1A ACO 1450 A 1 HETATM 2 C C2A ACO . . . C 3 -35.672 -21.309 30.436 1 44.85 ? C2A ACO 1450 A 1 HETATM 3 N N3A ACO . . . C 3 -34.799 -22.121 29.812 1 44.99 ? N3A ACO 1450 A 1 HETATM 4 C C4A ACO . . . C 3 -34.25 -21.764 28.619 1 45.27 ? C4A ACO 1450 A 1 HETATM 5 C C5A ACO . . . C 3 -34.626 -20.473 28.017 1 44.72 ? C5A ACO 1450 A 1 HETATM 6 C C6A ACO . . . C 3 -35.594 -19.635 28.765 1 44.82 ? C6A ACO 1450 A 1 HETATM 7 N N6A ACO . . . C 3 -35.997 -18.431 28.293 1 44.19 ? N6A ACO 1450 A 1 HETATM 8 N N7A ACO . . . C 3 -33.946 -20.376 26.863 1 44.89 ? N7A ACO 1450 A 1 HETATM 9 C C8A ACO . . . C 3 -33.202 -21.503 26.729 1 45.06 ? C8A ACO 1450 A 1 HETATM 10 N N9A ACO . . . C 3 -33.388 -22.331 27.773 1 45.07 ? N9A ACO 1450 A 1 HETATM 11 C C1B ACO . . . C 3 -32.736 -23.643 27.979 1 45.2 ? C1B ACO 1450 A 1 HETATM 12 C C2B ACO . . . C 3 -33.43 -24.771 27.236 1 46.26 ? C2B ACO 1450 A 1 HETATM 13 O O2B ACO . . . C 3 -34.524 -25.332 27.97 1 46.07 ? O2B ACO 1450 A 1 HETATM 14 C C3B ACO . . . C 3 -32.297 -25.763 27.061 1 46.83 ? C3B ACO 1450 A 1 HETATM 15 O O3B ACO . . . C 3 -32.143 -26.542 28.241 1 48.16 ? O3B ACO 1450 A 1 HETATM 16 P P3B ACO . . . C 3 -32.651 -28.064 28.294 1 49.15 ? P3B ACO 1450 A 1 HETATM 17 O O7A ACO . . . C 3 -34.062 -27.998 27.759 1 49.47 ? O7A ACO 1450 A 1 HETATM 18 O O8A ACO . . . C 3 -32.546 -28.395 29.763 1 49.56 ? O8A ACO 1450 A 1 HETATM 19 O O9A ACO . . . C 3 -31.691 -28.811 27.406 1 48.34 ? O9A ACO 1450 A 1 HETATM 20 C C4B ACO . . . C 3 -31.051 -24.902 26.942 1 45.98 ? C4B ACO 1450 A 1 HETATM 21 O O4B ACO . . . C 3 -31.404 -23.616 27.46 1 45.54 ? O4B ACO 1450 A 1 HETATM 22 C C5B ACO . . . C 3 -30.559 -24.788 25.502 1 44.91 ? C5B ACO 1450 A 1 HETATM 23 O O5B ACO . . . C 3 -31.653 -24.629 24.593 1 43.69 ? O5B ACO 1450 A 1 HETATM 24 P P1A ACO . . . C 3 -31.367 -24.269 23.05 1 42.91 ? P1A ACO 1450 A 1 HETATM 25 O O1A ACO . . . C 3 -30.249 -25.169 22.574 1 41.12 ? O1A ACO 1450 A 1 HETATM 26 O O2A ACO . . . C 3 -32.689 -24.238 22.321 1 43.05 ? O2A ACO 1450 A 1 HETATM 27 O O3A ACO . . . C 3 -30.806 -22.777 23.236 1 42.3 ? O3A ACO 1450 A 1 HETATM 28 P P2A ACO . . . C 3 -31.165 -21.523 22.3 1 42.87 ? P2A ACO 1450 A 1 HETATM 29 O O4A ACO . . . C 3 -30.967 -21.86 20.84 1 42.8 ? O4A ACO 1450 A 1 HETATM 30 O O5A ACO . . . C 3 -32.485 -20.951 22.746 1 43.32 ? O5A ACO 1450 A 1 HETATM 31 O O6A ACO . . . C 3 -29.999 -20.486 22.691 1 42.62 ? O6A ACO 1450 A 1 HETATM 32 C CBP ACO . . . C 3 -28.582 -19.236 24.178 1 42.24 ? CBP ACO 1450 A 1 HETATM 33 C CCP ACO . . . C 3 -29.254 -20.575 23.909 1 42.09 ? CCP ACO 1450 A 1 HETATM 34 C CDP ACO . . . C 3 -27.447 -19.053 23.178 1 40.97 ? CDP ACO 1450 A 1 HETATM 35 C CEP ACO . . . C 3 -28.015 -19.236 25.588 1 41.54 ? CEP ACO 1450 A 1 HETATM 36 C CAP ACO . . . C 3 -29.662 -18.144 24.034 1 42.89 ? CAP ACO 1450 A 1 HETATM 37 O OAP ACO . . . C 3 -30.508 -18.103 25.196 1 42.86 ? OAP ACO 1450 A 1 HETATM 38 C C9P ACO . . . C 3 -29.124 -16.767 23.746 1 43.07 ? C9P ACO 1450 A 1 HETATM 39 O O9P ACO . . . C 3 -28.7 -16.494 22.632 1 43.66 ? O9P ACO 1450 A 1 HETATM 40 N N8P ACO . . . C 3 -29.167 -15.89 24.746 1 43.18 ? N8P ACO 1450 A 1 HETATM 41 C C7P ACO . . . C 3 -28.709 -14.52 24.616 1 43.66 ? C7P ACO 1450 A 1 HETATM 42 C C6P ACO . . . C 3 -27.187 -14.426 24.557 1 44.76 ? C6P ACO 1450 A 1 HETATM 43 C C5P ACO . . . C 3 -26.549 -15.165 25.71 1 44.95 ? C5P ACO 1450 A 1 HETATM 44 O O5P ACO . . . C 3 -26.795 -14.83 26.857 1 45.5 ? O5P ACO 1450 A 1 HETATM 45 N N4P ACO . . . C 3 -25.731 -16.166 25.389 1 45.32 ? N4P ACO 1450 A 1 HETATM 46 C C3P ACO . . . C 3 -24.769 -16.741 26.314 1 46.82 ? C3P ACO 1450 A 1 HETATM 47 C C2P ACO . . . C 3 -23.647 -15.766 26.653 1 48.07 ? C2P ACO 1450 A 1 HETATM 48 S S1P ACO . . . C 3 -22.288 -16.626 27.374 1 50.4 ? S1P ACO 1450 A 1 HETATM 49 C C ACO . . . C 3 -21.156 -16.569 26.156 1 49.27 ? C ACO 1450 A 1 HETATM 50 O O ACO . . . C 3 -21.207 -15.666 25.344 1 49.28 ? O ACO 1450 A 1 HETATM 51 C CH3 ACO . . . C 3 -20.102 -17.631 26.094 1 49.36 ? CH3 ACO 1450 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 51 #