data_2Y1J # _model_server_result.job_id FiR612kPGvNMun3CTiSmuQ _model_server_result.datetime_utc '2025-01-10 10:57:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 2Y1J # _exptl.entry_id 2Y1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Y1J _cell.length_a 88.525 _cell.length_b 93.382 _cell.length_c 105.773 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DG 4 C DG 7 1_555 C P QBT 5 C QBT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? covale ? covale2 C C5 QBT 5 C QBT 8 1_555 C C5M THM 6 C THM 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.517 ? covale ? covale3 C O3' THM 6 C THM 9 1_555 C P DG 7 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? hydrog WATSON-CRICK hydrog1 B N1 DG 1 B DG 20 1_555 C N3 DC 10 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 1 B DG 20 1_555 C O2 DC 10 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 1 B DG 20 1_555 C N4 DC 10 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 2 B DA 21 1_555 C N3 DT 9 C DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 2 B DA 21 1_555 C O4 DT 9 C DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DC 3 B DC 22 1_555 C N1 DG 8 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N4 DC 3 B DC 22 1_555 C O6 DG 8 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O2 DC 3 B DC 22 1_555 C N2 DG 8 C DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 DC 4 B DC 23 1_555 C N1 DG 7 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 DC 4 B DC 23 1_555 C O6 DG 7 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 DC 4 B DC 23 1_555 C N2 DG 7 C DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 6 B DA 25 1_555 C N3 QBT 5 C QBT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 6 B DA 25 1_555 C O4 QBT 5 C QBT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 7 B DC 26 1_555 C N1 DG 4 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 7 B DC 26 1_555 C O6 DG 4 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 7 B DC 26 1_555 C N2 DG 4 C DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DC 8 B DC 27 1_555 C N1 DG 3 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N4 DC 8 B DC 27 1_555 C O6 DG 3 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O2 DC 8 B DC 27 1_555 C N2 DG 3 C DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N3 DC 9 B DC 28 1_555 C N1 DG 2 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N4 DC 9 B DC 28 1_555 C O6 DG 2 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O2 DC 9 B DC 28 1_555 C N2 DG 2 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N3 DT 10 B DT 29 1_555 C N1 DA 1 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O4 DT 10 B DT 29 1_555 C N6 DA 1 C DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 478 n n S O2 SO4 doub 479 n n S O3 SO4 sing 480 n n S O4 SO4 sing 481 n n # _atom_sites.entry_id 2Y1J _atom_sites.fract_transf_matrix[1][1] 0.011296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 A 1 901 1877 SO4 SO4 . E 4 SO4 A 1 902 1878 SO4 SO4 . F 5 HOH A 1 1001 2105 HOH HOH . F 5 HOH A 2 1002 2083 HOH HOH . F 5 HOH A 3 1003 2059 HOH HOH . F 5 HOH A 4 1004 2109 HOH HOH . F 5 HOH A 5 1005 2007 HOH HOH . F 5 HOH A 6 1006 2039 HOH HOH . F 5 HOH A 7 1007 2099 HOH HOH . F 5 HOH A 8 1008 2032 HOH HOH . F 5 HOH A 9 1009 2011 HOH HOH . F 5 HOH A 10 1010 2092 HOH HOH . F 5 HOH A 11 1011 2117 HOH HOH . F 5 HOH A 12 1012 2021 HOH HOH . F 5 HOH A 13 1013 2012 HOH HOH . F 5 HOH A 14 1014 2147 HOH HOH . F 5 HOH A 15 1015 2125 HOH HOH . F 5 HOH A 16 1016 2093 HOH HOH . F 5 HOH A 17 1017 2061 HOH HOH . F 5 HOH A 18 1018 2068 HOH HOH . F 5 HOH A 19 1019 2034 HOH HOH . F 5 HOH A 20 1020 2112 HOH HOH . F 5 HOH A 21 1021 2116 HOH HOH . F 5 HOH A 22 1022 2065 HOH HOH . F 5 HOH A 23 1023 2035 HOH HOH . F 5 HOH A 24 1024 2006 HOH HOH . F 5 HOH A 25 1025 2045 HOH HOH . F 5 HOH A 26 1026 2106 HOH HOH . F 5 HOH A 27 1027 2087 HOH HOH . F 5 HOH A 28 1028 2153 HOH HOH . F 5 HOH A 29 1029 2002 HOH HOH . F 5 HOH A 30 1030 2080 HOH HOH . F 5 HOH A 31 1031 2146 HOH HOH . F 5 HOH A 32 1032 2029 HOH HOH . F 5 HOH A 33 1033 2010 HOH HOH . F 5 HOH A 34 1034 2030 HOH HOH . F 5 HOH A 35 1035 2070 HOH HOH . F 5 HOH A 36 1036 2141 HOH HOH . F 5 HOH A 37 1037 2033 HOH HOH . F 5 HOH A 38 1038 2136 HOH HOH . F 5 HOH A 39 1039 2074 HOH HOH . F 5 HOH A 40 1040 2043 HOH HOH . F 5 HOH A 41 1041 2140 HOH HOH . F 5 HOH A 42 1042 2100 HOH HOH . F 5 HOH A 43 1043 2036 HOH HOH . F 5 HOH A 44 1044 2014 HOH HOH . F 5 HOH A 45 1045 2016 HOH HOH . F 5 HOH A 46 1046 2143 HOH HOH . F 5 HOH A 47 1047 2131 HOH HOH . F 5 HOH A 48 1048 2067 HOH HOH . F 5 HOH A 49 1049 2020 HOH HOH . F 5 HOH A 50 1050 2073 HOH HOH . F 5 HOH A 51 1051 2026 HOH HOH . F 5 HOH A 52 1052 2025 HOH HOH . F 5 HOH A 53 1053 2017 HOH HOH . F 5 HOH A 54 1054 2134 HOH HOH . F 5 HOH A 55 1055 2154 HOH HOH . F 5 HOH A 56 1056 2152 HOH HOH . F 5 HOH A 57 1057 2050 HOH HOH . F 5 HOH A 58 1058 2088 HOH HOH . F 5 HOH A 59 1059 2097 HOH HOH . F 5 HOH A 60 1060 2122 HOH HOH . F 5 HOH A 61 1061 2124 HOH HOH . F 5 HOH A 62 1062 2023 HOH HOH . F 5 HOH A 63 1063 2038 HOH HOH . F 5 HOH A 64 1064 2103 HOH HOH . F 5 HOH A 65 1065 2133 HOH HOH . F 5 HOH A 66 1066 2055 HOH HOH . F 5 HOH A 67 1067 2114 HOH HOH . F 5 HOH A 68 1068 2019 HOH HOH . F 5 HOH A 69 1069 2013 HOH HOH . F 5 HOH A 70 1070 2086 HOH HOH . F 5 HOH A 71 1071 2102 HOH HOH . F 5 HOH A 72 1072 2138 HOH HOH . F 5 HOH A 73 1073 2009 HOH HOH . F 5 HOH A 74 1074 2051 HOH HOH . F 5 HOH A 75 1075 2064 HOH HOH . F 5 HOH A 76 1076 2130 HOH HOH . F 5 HOH A 77 1077 2145 HOH HOH . F 5 HOH A 78 1078 2079 HOH HOH . F 5 HOH A 79 1079 2129 HOH HOH . F 5 HOH A 80 1080 2054 HOH HOH . F 5 HOH A 81 1081 2008 HOH HOH . F 5 HOH A 82 1082 2095 HOH HOH . F 5 HOH A 83 1083 2139 HOH HOH . F 5 HOH A 84 1084 2135 HOH HOH . F 5 HOH A 85 1085 2118 HOH HOH . F 5 HOH A 86 1086 2127 HOH HOH . F 5 HOH A 87 1087 2082 HOH HOH . F 5 HOH A 88 1088 2144 HOH HOH . F 5 HOH A 89 1089 2071 HOH HOH . F 5 HOH A 90 1090 2076 HOH HOH . F 5 HOH A 91 1091 2066 HOH HOH . F 5 HOH A 92 1092 2037 HOH HOH . F 5 HOH A 93 1093 2062 HOH HOH . F 5 HOH A 94 1094 2024 HOH HOH . F 5 HOH A 95 1095 2155 HOH HOH . F 5 HOH A 96 1096 2148 HOH HOH . F 5 HOH A 97 1097 2022 HOH HOH . F 5 HOH A 98 1098 2096 HOH HOH . F 5 HOH A 99 1099 2027 HOH HOH . F 5 HOH A 100 1100 2132 HOH HOH . F 5 HOH A 101 1101 2004 HOH HOH . F 5 HOH A 102 1102 2040 HOH HOH . F 5 HOH A 103 1103 2119 HOH HOH . F 5 HOH A 104 1104 2044 HOH HOH . F 5 HOH A 105 1105 2081 HOH HOH . F 5 HOH A 106 1106 2104 HOH HOH . F 5 HOH A 107 1107 2110 HOH HOH . F 5 HOH A 108 1108 2003 HOH HOH . F 5 HOH A 109 1109 2126 HOH HOH . F 5 HOH A 110 1110 2137 HOH HOH . F 5 HOH A 111 1111 2031 HOH HOH . F 5 HOH A 112 1112 2005 HOH HOH . F 5 HOH A 113 1113 2089 HOH HOH . F 5 HOH A 114 1114 2160 HOH HOH . F 5 HOH A 115 1115 2121 HOH HOH . F 5 HOH A 116 1116 2150 HOH HOH . F 5 HOH A 117 1117 2018 HOH HOH . F 5 HOH A 118 1118 2057 HOH HOH . F 5 HOH A 119 1119 2098 HOH HOH . F 5 HOH A 120 1120 2094 HOH HOH . F 5 HOH A 121 1121 2001 HOH HOH . F 5 HOH A 122 1122 2123 HOH HOH . F 5 HOH A 123 1123 2159 HOH HOH . F 5 HOH A 124 1124 2128 HOH HOH . F 5 HOH A 125 1125 2085 HOH HOH . F 5 HOH A 126 1126 2156 HOH HOH . F 5 HOH A 127 1127 2158 HOH HOH . F 5 HOH A 128 1128 2060 HOH HOH . F 5 HOH A 129 1129 2015 HOH HOH . F 5 HOH A 130 1130 2077 HOH HOH . F 5 HOH A 131 1131 2084 HOH HOH . F 5 HOH A 132 1132 2149 HOH HOH . F 5 HOH A 133 1133 2091 HOH HOH . F 5 HOH A 134 1134 2049 HOH HOH . F 5 HOH A 135 1135 2157 HOH HOH . F 5 HOH A 136 1136 2069 HOH HOH . F 5 HOH A 137 1137 2090 HOH HOH . F 5 HOH A 138 1138 2111 HOH HOH . F 5 HOH A 139 1139 2047 HOH HOH . F 5 HOH A 140 1140 2107 HOH HOH . F 5 HOH A 141 1141 2113 HOH HOH . F 5 HOH A 142 1142 2048 HOH HOH . F 5 HOH A 143 1143 2101 HOH HOH . F 5 HOH A 144 1144 2151 HOH HOH . F 5 HOH A 145 1145 2042 HOH HOH . F 5 HOH A 146 1146 2028 HOH HOH . F 5 HOH A 147 1147 2115 HOH HOH . F 5 HOH A 148 1148 2053 HOH HOH . F 5 HOH A 149 1149 2142 HOH HOH . F 5 HOH A 150 1150 2120 HOH HOH . F 5 HOH A 151 1151 2108 HOH HOH . F 5 HOH A 152 1152 2075 HOH HOH . F 5 HOH A 153 1153 2078 HOH HOH . F 5 HOH A 154 1154 2072 HOH HOH . F 5 HOH A 155 1155 2063 HOH HOH . F 5 HOH A 156 1156 2056 HOH HOH . F 5 HOH A 157 1157 2058 HOH HOH . F 5 HOH A 158 1158 2046 HOH HOH . F 5 HOH A 159 1159 2041 HOH HOH . F 5 HOH A 160 1160 2052 HOH HOH . G 5 HOH B 1 2001 2001 HOH HOH . G 5 HOH B 2 2002 2003 HOH HOH . G 5 HOH B 3 2003 2002 HOH HOH . G 5 HOH B 4 2004 2004 HOH HOH . H 5 HOH C 1 2001 2001 HOH HOH . H 5 HOH C 2 2002 2002 HOH HOH . H 5 HOH C 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . E 4 -13.648 -5.732 -8.985 1 52.27 ? S SO4 902 A 1 HETATM 2 O O1 SO4 . . . E 4 -12.23 -5.666 -8.689 1 51.17 ? O1 SO4 902 A 1 HETATM 3 O O2 SO4 . . . E 4 -13.914 -4.688 -9.968 1 52.25 ? O2 SO4 902 A 1 HETATM 4 O O3 SO4 . . . E 4 -13.98 -7.053 -9.501 1 51.71 ? O3 SO4 902 A 1 HETATM 5 O O4 SO4 . . . E 4 -14.453 -5.48 -7.803 1 52.24 ? O4 SO4 902 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #