data_2Y1R
#
_model_server_result.job_id            yUDR4k9bUQ-4bfQV-iYKJg 
_model_server_result.datetime_utc      '2025-03-06 09:53:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y1r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":500}' 
#
_entry.id    2Y1R 
#
_exptl.entry_id    2Y1R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              150.087 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'S,R MESO-TARTARIC ACID' 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Y1R 
_cell.length_a            110.02 
_cell.length_b            124.72 
_cell.length_c            149.83 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y1R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
PISA monomeric 1 author_and_software_defined_assembly 7 
PISA monomeric 1 author_and_software_defined_assembly 8 
PISA monomeric 1 author_and_software_defined_assembly 9 
PISA monomeric 1 author_and_software_defined_assembly 10 
PISA monomeric 1 author_and_software_defined_assembly 11 
PISA monomeric 1 author_and_software_defined_assembly 12 
PISA monomeric 1 author_and_software_defined_assembly 13 
PISA monomeric 1 author_and_software_defined_assembly 14 
PISA monomeric 1 author_and_software_defined_assembly 15 
PISA monomeric 1 author_and_software_defined_assembly 16 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,Q,R,GA 1 1 
B,S,T,HA 2 1 
C,U,V,IA 3 1 
D,W,X,JA 4 1 
E,Y,Z,KA 5 1 
F,AA,BA,LA 6 1 
G,CA,DA,MA 7 1 
H,EA,FA,NA 8 1 
I,OA 9 1 
J,PA 10 1 
K,QA 11 1 
L,RA 12 1 
M,SA 13 1 
N,TA 14 1 
O,UA 15 1 
P,VA 16 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 DA N N 
? 3 EA N N 
? 3 FA N N 
#
_chem_comp.formula           'C4 H6 O6' 
_chem_comp.formula_weight    150.087 
_chem_comp.id                SRT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'S,R MESO-TARTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 SRT sing 290 n n 
O1 H1 SRT sing 291 n n 
O11 C1 SRT doub 292 n n 
C1 C2 SRT sing 293 n n 
C2 O2 SRT sing 294 n n 
C2 C3 SRT sing 295 n n 
C2 H2 SRT sing 296 n n 
O2 HA SRT sing 297 n n 
C3 O3 SRT sing 298 n n 
C3 C4 SRT sing 299 n n 
C3 H3 SRT sing 300 n n 
O3 HB SRT sing 301 n n 
C4 O4 SRT doub 302 n n 
C4 O41 SRT sing 303 n n 
O41 H41 SRT sing 304 n n 
#
_atom_sites.entry_id                     2Y1R 
_atom_sites.fract_transf_matrix[1][1]    0.009089 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008018 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006674 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 3 SRT A 1 500 500 SRT SRT . 
R 3 SRT A 1 600 600 SRT SRT . 
S 3 SRT B 1 500 500 SRT SRT . 
T 3 SRT B 1 600 600 SRT SRT . 
U 3 SRT C 1 500 500 SRT SRT . 
V 3 SRT C 1 600 600 SRT SRT . 
W 3 SRT D 1 500 500 SRT SRT . 
X 3 SRT D 1 600 600 SRT SRT . 
Y 3 SRT E 1 500 500 SRT SRT . 
Z 3 SRT E 1 600 600 SRT SRT . 
AA 3 SRT F 1 500 500 SRT SRT . 
BA 3 SRT F 1 600 600 SRT SRT . 
CA 3 SRT G 1 500 500 SRT SRT . 
DA 3 SRT G 1 600 600 SRT SRT . 
EA 3 SRT H 1 500 500 SRT SRT . 
FA 3 SRT H 1 600 600 SRT SRT . 
GA 4 HOH A 1 2001 2001 HOH HOH . 
GA 4 HOH A 2 2002 2002 HOH HOH . 
GA 4 HOH A 3 2003 2003 HOH HOH . 
GA 4 HOH A 4 2004 2004 HOH HOH . 
GA 4 HOH A 5 2005 2005 HOH HOH . 
GA 4 HOH A 6 2006 2006 HOH HOH . 
GA 4 HOH A 7 2007 2007 HOH HOH . 
GA 4 HOH A 8 2008 2008 HOH HOH . 
GA 4 HOH A 9 2009 2009 HOH HOH . 
GA 4 HOH A 10 2010 2010 HOH HOH . 
GA 4 HOH A 11 2011 2011 HOH HOH . 
GA 4 HOH A 12 2012 2012 HOH HOH . 
GA 4 HOH A 13 2013 2013 HOH HOH . 
GA 4 HOH A 14 2014 2014 HOH HOH . 
HA 4 HOH B 1 2001 2001 HOH HOH . 
HA 4 HOH B 2 2002 2002 HOH HOH . 
HA 4 HOH B 3 2003 2003 HOH HOH . 
HA 4 HOH B 4 2004 2004 HOH HOH . 
HA 4 HOH B 5 2005 2005 HOH HOH . 
HA 4 HOH B 6 2006 2006 HOH HOH . 
HA 4 HOH B 7 2007 2007 HOH HOH . 
HA 4 HOH B 8 2008 2008 HOH HOH . 
HA 4 HOH B 9 2009 2009 HOH HOH . 
HA 4 HOH B 10 2010 2010 HOH HOH . 
HA 4 HOH B 11 2011 2011 HOH HOH . 
HA 4 HOH B 12 2012 2012 HOH HOH . 
HA 4 HOH B 13 2013 2013 HOH HOH . 
HA 4 HOH B 14 2014 2014 HOH HOH . 
HA 4 HOH B 15 2015 2015 HOH HOH . 
IA 4 HOH C 1 2001 2001 HOH HOH . 
IA 4 HOH C 2 2002 2002 HOH HOH . 
IA 4 HOH C 3 2003 2003 HOH HOH . 
IA 4 HOH C 4 2004 2004 HOH HOH . 
IA 4 HOH C 5 2005 2005 HOH HOH . 
IA 4 HOH C 6 2006 2006 HOH HOH . 
IA 4 HOH C 7 2007 2007 HOH HOH . 
IA 4 HOH C 8 2008 2008 HOH HOH . 
IA 4 HOH C 9 2009 2009 HOH HOH . 
IA 4 HOH C 10 2010 2010 HOH HOH . 
IA 4 HOH C 11 2011 2011 HOH HOH . 
IA 4 HOH C 12 2012 2012 HOH HOH . 
JA 4 HOH D 1 2001 2001 HOH HOH . 
JA 4 HOH D 2 2002 2002 HOH HOH . 
JA 4 HOH D 3 2003 2003 HOH HOH . 
JA 4 HOH D 4 2004 2004 HOH HOH . 
JA 4 HOH D 5 2005 2005 HOH HOH . 
JA 4 HOH D 6 2006 2006 HOH HOH . 
JA 4 HOH D 7 2007 2007 HOH HOH . 
JA 4 HOH D 8 2008 2008 HOH HOH . 
JA 4 HOH D 9 2009 2009 HOH HOH . 
JA 4 HOH D 10 2010 2010 HOH HOH . 
JA 4 HOH D 11 2011 2011 HOH HOH . 
JA 4 HOH D 12 2012 2012 HOH HOH . 
JA 4 HOH D 13 2013 2013 HOH HOH . 
JA 4 HOH D 14 2014 2014 HOH HOH . 
JA 4 HOH D 15 2015 2015 HOH HOH . 
JA 4 HOH D 16 2016 2016 HOH HOH . 
JA 4 HOH D 17 2017 2017 HOH HOH . 
KA 4 HOH E 1 2001 2001 HOH HOH . 
KA 4 HOH E 2 2002 2002 HOH HOH . 
KA 4 HOH E 3 2003 2003 HOH HOH . 
KA 4 HOH E 4 2004 2004 HOH HOH . 
KA 4 HOH E 5 2005 2005 HOH HOH . 
KA 4 HOH E 6 2006 2006 HOH HOH . 
KA 4 HOH E 7 2007 2007 HOH HOH . 
LA 4 HOH F 1 2001 2001 HOH HOH . 
LA 4 HOH F 2 2002 2002 HOH HOH . 
LA 4 HOH F 3 2003 2003 HOH HOH . 
MA 4 HOH G 1 2001 2001 HOH HOH . 
MA 4 HOH G 2 2002 2002 HOH HOH . 
MA 4 HOH G 3 2003 2003 HOH HOH . 
MA 4 HOH G 4 2004 2004 HOH HOH . 
MA 4 HOH G 5 2005 2005 HOH HOH . 
MA 4 HOH G 6 2006 2006 HOH HOH . 
MA 4 HOH G 7 2007 2007 HOH HOH . 
MA 4 HOH G 8 2008 2008 HOH HOH . 
MA 4 HOH G 9 2009 2009 HOH HOH . 
MA 4 HOH G 10 2010 2010 HOH HOH . 
MA 4 HOH G 11 2011 2011 HOH HOH . 
NA 4 HOH H 1 2001 2001 HOH HOH . 
NA 4 HOH H 2 2002 2002 HOH HOH . 
NA 4 HOH H 3 2003 2003 HOH HOH . 
NA 4 HOH H 4 2004 2004 HOH HOH . 
NA 4 HOH H 5 2005 2005 HOH HOH . 
NA 4 HOH H 6 2006 2006 HOH HOH . 
NA 4 HOH H 7 2007 2007 HOH HOH . 
NA 4 HOH H 8 2008 2008 HOH HOH . 
OA 4 HOH I 1 2001 2001 HOH HOH . 
OA 4 HOH I 2 2002 2002 HOH HOH . 
OA 4 HOH I 3 2003 2003 HOH HOH . 
OA 4 HOH I 4 2004 2004 HOH HOH . 
OA 4 HOH I 5 2005 2005 HOH HOH . 
PA 4 HOH J 1 2001 2001 HOH HOH . 
PA 4 HOH J 2 2002 2002 HOH HOH . 
PA 4 HOH J 3 2003 2003 HOH HOH . 
PA 4 HOH J 4 2004 2004 HOH HOH . 
QA 4 HOH K 1 2001 2001 HOH HOH . 
QA 4 HOH K 2 2002 2002 HOH HOH . 
QA 4 HOH K 3 2003 2003 HOH HOH . 
QA 4 HOH K 4 2004 2004 HOH HOH . 
QA 4 HOH K 5 2005 2005 HOH HOH . 
QA 4 HOH K 6 2006 2006 HOH HOH . 
RA 4 HOH L 1 2001 2001 HOH HOH . 
SA 4 HOH M 1 2001 2001 HOH HOH . 
SA 4 HOH M 2 2002 2002 HOH HOH . 
SA 4 HOH M 3 2003 2003 HOH HOH . 
SA 4 HOH M 4 2004 2004 HOH HOH . 
SA 4 HOH M 5 2005 2005 HOH HOH . 
TA 4 HOH N 1 2001 2001 HOH HOH . 
TA 4 HOH N 2 2002 2002 HOH HOH . 
TA 4 HOH N 3 2003 2003 HOH HOH . 
TA 4 HOH N 4 2004 2004 HOH HOH . 
TA 4 HOH N 5 2005 2005 HOH HOH . 
UA 4 HOH O 1 2001 2001 HOH HOH . 
UA 4 HOH O 2 2002 2002 HOH HOH . 
UA 4 HOH O 3 2003 2003 HOH HOH . 
UA 4 HOH O 4 2004 2004 HOH HOH . 
VA 4 HOH P 1 2001 2001 HOH HOH . 
VA 4 HOH P 2 2002 2002 HOH HOH . 
VA 4 HOH P 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 SRT . . . U 3 -60.304 -10.977 -3.861 1 100.56 ? O1 SRT 500 C 1 
HETATM 2 O O11 SRT . . . U 3 -62.357 -11.854 -3.785 1 71.45 ? O11 SRT 500 C 1 
HETATM 3 C C1 SRT . . . U 3 -61.37 -11.276 -3.256 1 98.97 ? C1 SRT 500 C 1 
HETATM 4 C C2 SRT . . . U 3 -61.493 -10.929 -1.801 1 89.29 ? C2 SRT 500 C 1 
HETATM 5 O O2 SRT . . . U 3 -61.543 -12.124 -1.018 1 74.6 ? O2 SRT 500 C 1 
HETATM 6 C C3 SRT . . . U 3 -60.294 -10.136 -1.304 1 97.16 ? C3 SRT 500 C 1 
HETATM 7 O O3 SRT . . . U 3 -60.114 -8.918 -2.04 1 112.95 ? O3 SRT 500 C 1 
HETATM 8 C C4 SRT . . . U 3 -60.612 -9.842 0.129 1 75.08 ? C4 SRT 500 C 1 
HETATM 9 O O4 SRT . . . U 3 -61.339 -8.864 0.389 1 83.51 ? O4 SRT 500 C 1 
HETATM 10 O O41 SRT . . . U 3 -60.165 -10.606 1.003 1 72.29 ? O41 SRT 500 C 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           10 
#