data_2Y1Z # _model_server_result.job_id BBUGETcWeTtNVg0KCcbJQQ _model_server_result.datetime_utc '2024-12-22 01:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1151}' # _entry.id 2Y1Z # _exptl.entry_id 2Y1Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Y1Z _cell.length_a 60.73 _cell.length_b 60.73 _cell.length_c 100.15 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 245 n n C1 H1C1 MRD sing 246 n n C1 H1C2 MRD sing 247 n n C1 H1C3 MRD sing 248 n n C2 O2 MRD sing 249 n n C2 CM MRD sing 250 n n C2 C3 MRD sing 251 n n O2 H2 MRD sing 252 n n CM HMC1 MRD sing 253 n n CM HMC2 MRD sing 254 n n CM HMC3 MRD sing 255 n n C3 C4 MRD sing 256 n n C3 H3C1 MRD sing 257 n n C3 H3C2 MRD sing 258 n n C4 O4 MRD sing 259 n n C4 C5 MRD sing 260 n n C4 H4 MRD sing 261 n n O4 HA MRD sing 262 n n C5 H5C1 MRD sing 263 n n C5 H5C2 MRD sing 264 n n C5 H5C3 MRD sing 265 n n # _atom_sites.entry_id 2Y1Z _atom_sites.fract_transf_matrix[1][1] 0.016466 _atom_sites.fract_transf_matrix[1][2] 0.009507 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019014 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MRD A 1 1152 1152 MRD MRD . D 3 MPD A 1 1153 1153 MPD MPD . E 2 MRD B 1 1151 1151 MRD MRD . F 2 MRD B 1 1152 1152 MRD MRD . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . E 2 32.613 -10.772 -8.898 1 29.67 ? C1 MRD 1151 B 1 HETATM 2 C C2 MRD . . . E 2 32.731 -12.231 -9.319 1 29.86 ? C2 MRD 1151 B 1 HETATM 3 O O2 MRD . . . E 2 32.68 -13.059 -8.128 1 30.75 ? O2 MRD 1151 B 1 HETATM 4 C CM MRD . . . E 2 34.069 -12.448 -10.012 1 29.91 ? CM MRD 1151 B 1 HETATM 5 C C3 MRD . . . E 2 31.565 -12.589 -10.239 1 29.98 ? C3 MRD 1151 B 1 HETATM 6 C C4 MRD . . . E 2 31.613 -14.008 -10.8 1 29.18 ? C4 MRD 1151 B 1 HETATM 7 O O4 MRD . . . E 2 32.099 -13.966 -12.121 1 29.09 ? O4 MRD 1151 B 1 HETATM 8 C C5 MRD . . . E 2 30.227 -14.637 -10.8 1 29.18 ? C5 MRD 1151 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 695 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #