data_2Y3A # _model_server_result.job_id dbqI3knjftI4F_NgA0mhPw _model_server_result.datetime_utc '2025-01-03 07:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y3a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2058}' # _entry.id 2Y3A # _exptl.entry_id 2Y3A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.636 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(1H-indazol-4-yl)-6-{[4-(methylsulfonyl)piperazin-1-yl]methyl}-4-morpholin-4-yl-thieno[3,2-d]pyrimidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Y3A _cell.length_a 134.314 _cell.length_b 134.314 _cell.length_c 428.062 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y3A _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H27 N7 O3 S2' _chem_comp.formula_weight 513.636 _chem_comp.id GD9 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(1H-indazol-4-yl)-6-{[4-(methylsulfonyl)piperazin-1-yl]methyl}-4-morpholin-4-yl-thieno[3,2-d]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C15 GD9 sing 83 n n O3 C16 GD9 sing 84 n n C4 N2 GD9 doub 85 n y C4 N3 GD9 sing 86 n n C4 C1 GD9 sing 87 n y C5 C6 GD9 doub 88 n y C5 C7 GD9 sing 89 n n C5 S1 GD9 sing 90 n y C6 C2 GD9 sing 91 n y N1 C2 GD9 sing 92 n y N1 C3 GD9 doub 93 n y C7 N4 GD9 sing 94 n n C8 C3 GD9 sing 95 n y C8 C18 GD9 doub 96 n y C8 C22 GD9 sing 97 n y N2 C3 GD9 sing 98 n y C9 C10 GD9 sing 99 n n C9 N4 GD9 sing 100 n n C10 N5 GD9 sing 101 n n C11 C12 GD9 sing 102 n n C11 N5 GD9 sing 103 n n C12 N4 GD9 sing 104 n n N3 C14 GD9 sing 105 n n N3 C17 GD9 sing 106 n n C13 S2 GD9 sing 107 n n C14 C15 GD9 sing 108 n n O2 S2 GD9 doub 109 n n S2 O1 GD9 doub 110 n n S2 N5 GD9 sing 111 n n S1 C1 GD9 sing 112 n y C2 C1 GD9 doub 113 n y C18 C19 GD9 sing 114 n y C19 C20 GD9 doub 115 n y C20 C21 GD9 sing 116 n y C21 N6 GD9 sing 117 n y C21 C22 GD9 doub 118 n y N6 N7 GD9 sing 119 n y C22 C23 GD9 sing 120 n y C23 N7 GD9 doub 121 n y C16 C17 GD9 sing 122 n n C6 H6 GD9 sing 123 n n C7 H7 GD9 sing 124 n n C7 H7A GD9 sing 125 n n C9 H9 GD9 sing 126 n n C9 H9A GD9 sing 127 n n C10 H10 GD9 sing 128 n n C10 H10A GD9 sing 129 n n C11 H11 GD9 sing 130 n n C11 H11A GD9 sing 131 n n C12 H12 GD9 sing 132 n n C12 H12A GD9 sing 133 n n C13 H13 GD9 sing 134 n n C13 H13A GD9 sing 135 n n C13 H13B GD9 sing 136 n n C14 H14 GD9 sing 137 n n C14 H14A GD9 sing 138 n n C15 H15 GD9 sing 139 n n C15 H15A GD9 sing 140 n n C18 H18 GD9 sing 141 n n C19 H19 GD9 sing 142 n n C20 H20 GD9 sing 143 n n N6 HN6 GD9 sing 144 n n C23 H23 GD9 sing 145 n n C16 H16 GD9 sing 146 n n C16 H16A GD9 sing 147 n n C17 H17 GD9 sing 148 n n C17 H17A GD9 sing 149 n n # _atom_sites.entry_id 2Y3A _atom_sites.fract_transf_matrix[1][1] 0.007445 _atom_sites.fract_transf_matrix[1][2] 0.004299 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id GD9 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2058 _pdbx_nonpoly_scheme.auth_seq_num 2058 _pdbx_nonpoly_scheme.pdb_mon_id GD9 _pdbx_nonpoly_scheme.auth_mon_id GD9 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 GD9 . . . C 3 28.178 -29.77 -2.277 1 69.28 ? O3 GD9 2058 A 1 HETATM 2 C C4 GD9 . . . C 3 24.357 -31.554 -2.636 1 77.4 ? C4 GD9 2058 A 1 HETATM 3 C C5 GD9 . . . C 3 21.144 -29.748 -4.02 1 90.59 ? C5 GD9 2058 A 1 HETATM 4 C C6 GD9 . . . C 3 20.893 -31.011 -3.759 1 85.84 ? C6 GD9 2058 A 1 HETATM 5 N N1 GD9 . . . C 3 21.987 -33.029 -2.872 1 82.65 ? N1 GD9 2058 A 1 HETATM 6 C C7 GD9 . . . C 3 20.069 -28.865 -4.55 1 102.7 ? C7 GD9 2058 A 1 HETATM 7 C C8 GD9 . . . C 3 23.106 -35 -2.212 1 94.25 ? C8 GD9 2058 A 1 HETATM 8 N N2 GD9 . . . C 3 24.256 -32.872 -2.482 1 82.51 ? N2 GD9 2058 A 1 HETATM 9 C C9 GD9 . . . C 3 18.442 -27.269 -3.653 1 123.05 ? C9 GD9 2058 A 1 HETATM 10 C C10 GD9 . . . C 3 16.917 -27.276 -3.332 1 126.57 ? C10 GD9 2058 A 1 HETATM 11 C C11 GD9 . . . C 3 16.96 -29.501 -2.157 1 124.96 ? C11 GD9 2058 A 1 HETATM 12 C C12 GD9 . . . C 3 18.291 -29.778 -2.936 1 122.15 ? C12 GD9 2058 A 1 HETATM 13 N N3 GD9 . . . C 3 25.567 -30.923 -2.377 1 70.39 ? N3 GD9 2058 A 1 HETATM 14 C C13 GD9 . . . C 3 17.37 -25.502 -0.911 1 130.19 ? C13 GD9 2058 A 1 HETATM 15 C C14 GD9 . . . C 3 26.716 -31.877 -2.22 1 68.01 ? C14 GD9 2058 A 1 HETATM 16 C C15 GD9 . . . C 3 28.129 -31.226 -2.406 1 69.45 ? C15 GD9 2058 A 1 HETATM 17 N N4 GD9 . . . C 3 19.141 -28.583 -3.421 1 116.85 ? N4 GD9 2058 A 1 HETATM 18 O O2 GD9 . . . C 3 16.094 -27.594 0.189 1 130.58 ? O2 GD9 2058 A 1 HETATM 19 S S2 GD9 . . . C 3 17.191 -27.304 -0.677 1 129.41 ? S2 GD9 2058 A 1 HETATM 20 O O1 GD9 . . . C 3 18.52 -27.784 -0.465 1 129.45 ? O1 GD9 2058 A 1 HETATM 21 N N5 GD9 . . . C 3 16.706 -28.034 -2.064 1 127.29 ? N5 GD9 2058 A 1 HETATM 22 S S1 GD9 . . . C 3 22.818 -29.282 -3.624 1 84.82 ? S1 GD9 2058 A 1 HETATM 23 C C2 GD9 . . . C 3 21.992 -31.743 -3.254 1 82.8 ? C2 GD9 2058 A 1 HETATM 24 C C1 GD9 . . . C 3 23.174 -30.927 -3.118 1 81.24 ? C1 GD9 2058 A 1 HETATM 25 C C3 GD9 . . . C 3 23.104 -33.585 -2.538 1 86.51 ? C3 GD9 2058 A 1 HETATM 26 C C18 GD9 . . . C 3 21.909 -35.71 -2.124 1 97.8 ? C18 GD9 2058 A 1 HETATM 27 C C19 GD9 . . . C 3 21.902 -37.063 -1.682 1 100.03 ? C19 GD9 2058 A 1 HETATM 28 C C20 GD9 . . . C 3 23.096 -37.788 -1.539 1 100.62 ? C20 GD9 2058 A 1 HETATM 29 C C21 GD9 . . . C 3 24.33 -37.104 -1.739 1 99.89 ? C21 GD9 2058 A 1 HETATM 30 N N6 GD9 . . . C 3 25.632 -37.494 -1.699 1 99.41 ? N6 GD9 2058 A 1 HETATM 31 C C22 GD9 . . . C 3 24.331 -35.702 -2.022 1 97.44 ? C22 GD9 2058 A 1 HETATM 32 C C23 GD9 . . . C 3 25.67 -35.342 -2.197 1 97.13 ? C23 GD9 2058 A 1 HETATM 33 N N7 GD9 . . . C 3 26.393 -36.381 -2.014 1 98.23 ? N7 GD9 2058 A 1 HETATM 34 C C16 GD9 . . . C 3 27.198 -29.015 -3.096 1 68.68 ? C16 GD9 2058 A 1 HETATM 35 C C17 GD9 . . . C 3 25.788 -29.634 -3.165 1 67.84 ? C17 GD9 2058 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #