data_2Y3F # _model_server_result.job_id KA2e44FsHfnzl93woNsa-Q _model_server_result.datetime_utc '2024-12-23 07:39:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1136}' # _entry.id 2Y3F # _exptl.entry_id 2Y3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Y3F _cell.length_a 57.34 _cell.length_b 57.34 _cell.length_c 77.55 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 57.34 -57.34 0 3 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 57.34 -57.34 0 4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 2Y3F _atom_sites.fract_transf_matrix[1][1] 0.01744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BTN A 1 1136 1136 BTN BTN . C 3 GOL A 1 1137 1137 GOL GOL . D 3 GOL A 1 1138 1138 GOL GOL . E 3 GOL A 1 1139 1139 GOL GOL . F 4 HOH A 1 2001 2001 HOH HOH . F 4 HOH A 2 2002 2002 HOH HOH . F 4 HOH A 3 2003 2003 HOH HOH . F 4 HOH A 4 2004 2004 HOH HOH . F 4 HOH A 5 2005 2005 HOH HOH . F 4 HOH A 6 2006 2006 HOH HOH . F 4 HOH A 7 2007 2007 HOH HOH . F 4 HOH A 8 2008 2008 HOH HOH . F 4 HOH A 9 2009 2009 HOH HOH . F 4 HOH A 10 2010 2010 HOH HOH . F 4 HOH A 11 2011 2011 HOH HOH . F 4 HOH A 12 2012 2012 HOH HOH . F 4 HOH A 13 2013 2013 HOH HOH . F 4 HOH A 14 2014 2014 HOH HOH . F 4 HOH A 15 2015 2015 HOH HOH . F 4 HOH A 16 2016 2016 HOH HOH . F 4 HOH A 17 2017 2017 HOH HOH . F 4 HOH A 18 2018 2018 HOH HOH . F 4 HOH A 19 2019 2019 HOH HOH . F 4 HOH A 20 2020 2020 HOH HOH . F 4 HOH A 21 2021 2021 HOH HOH . F 4 HOH A 22 2022 2022 HOH HOH . F 4 HOH A 23 2023 2023 HOH HOH . F 4 HOH A 24 2024 2024 HOH HOH . F 4 HOH A 25 2025 2025 HOH HOH . F 4 HOH A 26 2026 2026 HOH HOH . F 4 HOH A 27 2027 2027 HOH HOH . F 4 HOH A 28 2028 2028 HOH HOH . F 4 HOH A 29 2029 2029 HOH HOH . F 4 HOH A 30 2030 2030 HOH HOH . F 4 HOH A 31 2031 2031 HOH HOH . F 4 HOH A 32 2032 2032 HOH HOH . F 4 HOH A 33 2033 2033 HOH HOH . F 4 HOH A 34 2034 2034 HOH HOH . F 4 HOH A 35 2035 2035 HOH HOH . F 4 HOH A 36 2036 2036 HOH HOH . F 4 HOH A 37 2037 2037 HOH HOH . F 4 HOH A 38 2038 2038 HOH HOH . F 4 HOH A 39 2039 2039 HOH HOH . F 4 HOH A 40 2040 2040 HOH HOH . F 4 HOH A 41 2041 2041 HOH HOH . F 4 HOH A 42 2042 2042 HOH HOH . F 4 HOH A 43 2043 2043 HOH HOH . F 4 HOH A 44 2044 2044 HOH HOH . F 4 HOH A 45 2045 2045 HOH HOH . F 4 HOH A 46 2046 2046 HOH HOH . F 4 HOH A 47 2047 2047 HOH HOH . F 4 HOH A 48 2048 2048 HOH HOH . F 4 HOH A 49 2050 2050 HOH HOH . F 4 HOH A 50 2051 2051 HOH HOH . F 4 HOH A 51 2052 2052 HOH HOH . F 4 HOH A 52 2053 2053 HOH HOH . F 4 HOH A 53 2054 2054 HOH HOH . F 4 HOH A 54 2055 2055 HOH HOH . F 4 HOH A 55 2056 2056 HOH HOH . F 4 HOH A 56 2057 2057 HOH HOH . F 4 HOH A 57 2058 2058 HOH HOH . F 4 HOH A 58 2059 2059 HOH HOH . F 4 HOH A 59 2060 2060 HOH HOH . F 4 HOH A 60 2061 2061 HOH HOH . F 4 HOH A 61 2062 2062 HOH HOH . F 4 HOH A 62 2063 2063 HOH HOH . F 4 HOH A 63 2064 2064 HOH HOH . F 4 HOH A 64 2065 2065 HOH HOH . F 4 HOH A 65 2066 2066 HOH HOH . F 4 HOH A 66 2067 2067 HOH HOH . F 4 HOH A 67 2068 2068 HOH HOH . F 4 HOH A 68 2069 2069 HOH HOH . F 4 HOH A 69 2070 2070 HOH HOH . F 4 HOH A 70 2071 2071 HOH HOH . F 4 HOH A 71 2072 2072 HOH HOH . F 4 HOH A 72 2073 2073 HOH HOH . F 4 HOH A 73 2074 2074 HOH HOH . F 4 HOH A 74 2075 2075 HOH HOH . F 4 HOH A 75 2076 2076 HOH HOH . F 4 HOH A 76 2077 2077 HOH HOH . F 4 HOH A 77 2078 2078 HOH HOH . F 4 HOH A 78 2079 2079 HOH HOH . F 4 HOH A 79 2080 2080 HOH HOH . F 4 HOH A 80 2081 2081 HOH HOH . F 4 HOH A 81 2082 2082 HOH HOH . F 4 HOH A 82 2083 2083 HOH HOH . F 4 HOH A 83 2084 2084 HOH HOH . F 4 HOH A 84 2085 2085 HOH HOH . F 4 HOH A 85 2086 2086 HOH HOH . F 4 HOH A 86 2087 2087 HOH HOH . F 4 HOH A 87 2088 2088 HOH HOH . F 4 HOH A 88 2089 2089 HOH HOH . F 4 HOH A 89 2090 2090 HOH HOH . F 4 HOH A 90 2091 2091 HOH HOH . F 4 HOH A 91 2092 2092 HOH HOH . F 4 HOH A 92 2093 2093 HOH HOH . F 4 HOH A 93 2095 2095 HOH HOH . F 4 HOH A 94 2096 2096 HOH HOH . F 4 HOH A 95 2097 2097 HOH HOH . F 4 HOH A 96 2098 2098 HOH HOH . F 4 HOH A 97 2099 2099 HOH HOH . F 4 HOH A 98 2101 2101 HOH HOH . F 4 HOH A 99 2102 2102 HOH HOH . F 4 HOH A 100 2103 2103 HOH HOH . F 4 HOH A 101 2104 2104 HOH HOH . F 4 HOH A 102 2105 2105 HOH HOH . F 4 HOH A 103 2106 2106 HOH HOH . F 4 HOH A 104 2107 2107 HOH HOH . F 4 HOH A 105 2108 2108 HOH HOH . F 4 HOH A 106 2109 2109 HOH HOH . F 4 HOH A 107 2110 2110 HOH HOH . F 4 HOH A 108 2111 2111 HOH HOH . F 4 HOH A 109 2112 2112 HOH HOH . F 4 HOH A 110 2113 2113 HOH HOH . F 4 HOH A 111 2115 2115 HOH HOH . F 4 HOH A 112 2116 2116 HOH HOH . F 4 HOH A 113 2117 2117 HOH HOH . F 4 HOH A 114 2118 2118 HOH HOH . F 4 HOH A 115 2119 2119 HOH HOH . F 4 HOH A 116 2120 2120 HOH HOH . F 4 HOH A 117 2121 2121 HOH HOH . F 4 HOH A 118 2122 2122 HOH HOH . F 4 HOH A 119 2123 2123 HOH HOH . F 4 HOH A 120 2124 2124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . B 2 24.573 -19.546 -14.223 1 6.96 ? C11 BTN 1136 A 1 HETATM 2 O O11 BTN . . . B 2 25.644 -19.596 -14.871 1 7.67 ? O11 BTN 1136 A 1 HETATM 3 O O12 BTN . . . B 2 23.822 -20.545 -14.093 1 8.12 ? O12 BTN 1136 A 1 HETATM 4 C C10 BTN . . . B 2 24.137 -18.233 -13.604 1 6.68 ? C10 BTN 1136 A 1 HETATM 5 C C9 BTN . . . B 2 25.297 -17.401 -13.053 1 6.31 ? C9 BTN 1136 A 1 HETATM 6 C C8 BTN . . . B 2 25.942 -18.045 -11.823 1 5.49 ? C8 BTN 1136 A 1 HETATM 7 C C7 BTN . . . B 2 27.068 -17.196 -11.238 1 5.17 ? C7 BTN 1136 A 1 HETATM 8 C C2 BTN . . . B 2 27.664 -17.854 -9.987 1 5.28 ? C2 BTN 1136 A 1 HETATM 9 S S1 BTN . . . B 2 26.648 -17.722 -8.529 1 5.06 ? S1 BTN 1136 A 1 HETATM 10 C C6 BTN . . . B 2 28.002 -18.301 -7.534 1 5.33 ? C6 BTN 1136 A 1 HETATM 11 C C5 BTN . . . B 2 29.254 -17.593 -8.098 1 4.62 ? C5 BTN 1136 A 1 HETATM 12 N N1 BTN . . . B 2 29.433 -16.281 -7.475 1 5.07 ? N1 BTN 1136 A 1 HETATM 13 C C3 BTN . . . B 2 29.298 -15.3 -8.375 1 5.38 ? C3 BTN 1136 A 1 HETATM 14 O O3 BTN . . . B 2 29.358 -14.087 -8.119 1 5.95 ? O3 BTN 1136 A 1 HETATM 15 N N2 BTN . . . B 2 29.052 -15.805 -9.591 1 5.47 ? N2 BTN 1136 A 1 HETATM 16 C C4 BTN . . . B 2 29.015 -17.26 -9.576 1 4.71 ? C4 BTN 1136 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #