data_2Y41 # _model_server_result.job_id KhcRwCnHA45SwLmVmBQYeQ _model_server_result.datetime_utc '2024-10-19 03:51:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1000}' # _entry.id 2Y41 # _exptl.entry_id 2Y41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2Y41 _cell.length_a 50.24 _cell.length_b 146.33 _cell.length_c 175.21 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 220 A ASP 217 1_555 F MN MN . B MN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc2 A OD1 ASP 244 A ASP 241 1_555 D MN MN . A MN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 C O1 IPM . A IPM 800 1_555 D MN MN . A MN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc4 C O2 IPM . A IPM 800 1_555 D MN MN . A MN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc5 D MN MN . A MN 999 1_555 I O HOH . A HOH 2118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc6 D MN MN . A MN 999 1_555 I O HOH . A HOH 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 D MN MN . A MN 999 1_555 B OD2 ASP 220 B ASP 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc8 B OD1 ASP 244 B ASP 241 1_555 F MN MN . B MN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc9 E O1 IPM . B IPM 800 1_555 F MN MN . B MN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc10 E O3 IPM . B IPM 800 1_555 F MN MN . B MN 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc11 F MN MN . B MN 999 1_555 J O HOH . B HOH 2080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc12 F MN MN . B MN 999 1_555 J O HOH . B HOH 2081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc13 G MN MN . B MN 1000 1_555 J O HOH . B HOH 2082 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc14 G MN MN . B MN 1000 1_555 J O HOH . B HOH 2082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc15 G MN MN . B MN 1000 1_555 J O HOH . B HOH 2083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc16 G MN MN . B MN 1000 1_555 J O HOH . B HOH 2083 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc17 G MN MN . B MN 1000 1_555 J O HOH . B HOH 2084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc18 G MN MN . B MN 1000 1_555 J O HOH . B HOH 2085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc19 G MN MN . B MN 1000 1_555 J O HOH . B HOH 2085 4_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc20 H MN MN . B MN 1001 1_555 J O HOH . B HOH 2087 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc21 H MN MN . B MN 1001 1_555 J O HOH . B HOH 2088 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc22 H MN MN . B MN 1001 1_555 J O HOH . B HOH 2090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2Y41 _atom_sites.fract_transf_matrix[1][1] 0.019904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IPM A 1 800 800 IPM IPM . D 3 MN A 1 999 999 MN MN . E 2 IPM B 1 800 800 IPM IPM . F 3 MN B 1 999 999 MN MN . G 3 MN B 1 1000 1000 MN MN . H 3 MN B 1 1001 1001 MN MN . I 4 HOH A 1 2001 2001 HOH HOH . I 4 HOH A 2 2002 2002 HOH HOH . I 4 HOH A 3 2003 2003 HOH HOH . I 4 HOH A 4 2004 2004 HOH HOH . I 4 HOH A 5 2005 2005 HOH HOH . I 4 HOH A 6 2006 2006 HOH HOH . I 4 HOH A 7 2007 2007 HOH HOH . I 4 HOH A 8 2008 2008 HOH HOH . I 4 HOH A 9 2009 2009 HOH HOH . I 4 HOH A 10 2010 2010 HOH HOH . I 4 HOH A 11 2011 2011 HOH HOH . I 4 HOH A 12 2013 2013 HOH HOH . I 4 HOH A 13 2014 2014 HOH HOH . I 4 HOH A 14 2015 2015 HOH HOH . I 4 HOH A 15 2016 2016 HOH HOH . I 4 HOH A 16 2017 2017 HOH HOH . I 4 HOH A 17 2018 2018 HOH HOH . I 4 HOH A 18 2019 2019 HOH HOH . I 4 HOH A 19 2020 2020 HOH HOH . I 4 HOH A 20 2021 2021 HOH HOH . I 4 HOH A 21 2022 2022 HOH HOH . I 4 HOH A 22 2023 2023 HOH HOH . I 4 HOH A 23 2025 2025 HOH HOH . I 4 HOH A 24 2026 2026 HOH HOH . I 4 HOH A 25 2027 2027 HOH HOH . I 4 HOH A 26 2028 2028 HOH HOH . I 4 HOH A 27 2029 2029 HOH HOH . I 4 HOH A 28 2030 2030 HOH HOH . I 4 HOH A 29 2031 2031 HOH HOH . I 4 HOH A 30 2032 2032 HOH HOH . I 4 HOH A 31 2033 2033 HOH HOH . I 4 HOH A 32 2034 2034 HOH HOH . I 4 HOH A 33 2036 2036 HOH HOH . I 4 HOH A 34 2037 2037 HOH HOH . I 4 HOH A 35 2038 2038 HOH HOH . I 4 HOH A 36 2039 2039 HOH HOH . I 4 HOH A 37 2040 2040 HOH HOH . I 4 HOH A 38 2041 2041 HOH HOH . I 4 HOH A 39 2042 2042 HOH HOH . I 4 HOH A 40 2043 2043 HOH HOH . I 4 HOH A 41 2044 2044 HOH HOH . I 4 HOH A 42 2045 2045 HOH HOH . I 4 HOH A 43 2046 2046 HOH HOH . I 4 HOH A 44 2047 2047 HOH HOH . I 4 HOH A 45 2048 2048 HOH HOH . I 4 HOH A 46 2049 2049 HOH HOH . I 4 HOH A 47 2050 2050 HOH HOH . I 4 HOH A 48 2051 2051 HOH HOH . I 4 HOH A 49 2052 2052 HOH HOH . I 4 HOH A 50 2053 2053 HOH HOH . I 4 HOH A 51 2054 2054 HOH HOH . I 4 HOH A 52 2055 2055 HOH HOH . I 4 HOH A 53 2056 2056 HOH HOH . I 4 HOH A 54 2057 2057 HOH HOH . I 4 HOH A 55 2058 2058 HOH HOH . I 4 HOH A 56 2059 2059 HOH HOH . I 4 HOH A 57 2060 2060 HOH HOH . I 4 HOH A 58 2061 2061 HOH HOH . I 4 HOH A 59 2062 2062 HOH HOH . I 4 HOH A 60 2063 2063 HOH HOH . I 4 HOH A 61 2064 2064 HOH HOH . I 4 HOH A 62 2065 2065 HOH HOH . I 4 HOH A 63 2066 2066 HOH HOH . I 4 HOH A 64 2067 2067 HOH HOH . I 4 HOH A 65 2068 2068 HOH HOH . I 4 HOH A 66 2069 2069 HOH HOH . I 4 HOH A 67 2070 2070 HOH HOH . I 4 HOH A 68 2071 2071 HOH HOH . I 4 HOH A 69 2072 2072 HOH HOH . I 4 HOH A 70 2073 2073 HOH HOH . I 4 HOH A 71 2074 2074 HOH HOH . I 4 HOH A 72 2075 2075 HOH HOH . I 4 HOH A 73 2076 2076 HOH HOH . I 4 HOH A 74 2077 2077 HOH HOH . I 4 HOH A 75 2078 2078 HOH HOH . I 4 HOH A 76 2079 2079 HOH HOH . I 4 HOH A 77 2080 2080 HOH HOH . I 4 HOH A 78 2081 2081 HOH HOH . I 4 HOH A 79 2082 2082 HOH HOH . I 4 HOH A 80 2083 2083 HOH HOH . I 4 HOH A 81 2084 2084 HOH HOH . I 4 HOH A 82 2085 2085 HOH HOH . I 4 HOH A 83 2086 2086 HOH HOH . I 4 HOH A 84 2087 2087 HOH HOH . I 4 HOH A 85 2088 2088 HOH HOH . I 4 HOH A 86 2089 2089 HOH HOH . I 4 HOH A 87 2090 2090 HOH HOH . I 4 HOH A 88 2091 2091 HOH HOH . I 4 HOH A 89 2092 2092 HOH HOH . I 4 HOH A 90 2093 2093 HOH HOH . I 4 HOH A 91 2094 2094 HOH HOH . I 4 HOH A 92 2095 2095 HOH HOH . I 4 HOH A 93 2096 2096 HOH HOH . I 4 HOH A 94 2097 2097 HOH HOH . I 4 HOH A 95 2098 2098 HOH HOH . I 4 HOH A 96 2099 2099 HOH HOH . I 4 HOH A 97 2100 2100 HOH HOH . I 4 HOH A 98 2101 2101 HOH HOH . I 4 HOH A 99 2103 2103 HOH HOH . I 4 HOH A 100 2104 2104 HOH HOH . I 4 HOH A 101 2105 2105 HOH HOH . I 4 HOH A 102 2106 2106 HOH HOH . I 4 HOH A 103 2107 2107 HOH HOH . I 4 HOH A 104 2108 2108 HOH HOH . I 4 HOH A 105 2109 2109 HOH HOH . I 4 HOH A 106 2110 2110 HOH HOH . I 4 HOH A 107 2111 2111 HOH HOH . I 4 HOH A 108 2112 2112 HOH HOH . I 4 HOH A 109 2113 2113 HOH HOH . I 4 HOH A 110 2114 2114 HOH HOH . I 4 HOH A 111 2115 2115 HOH HOH . I 4 HOH A 112 2116 2116 HOH HOH . I 4 HOH A 113 2117 2117 HOH HOH . I 4 HOH A 114 2118 2118 HOH HOH . I 4 HOH A 115 2119 2119 HOH HOH . J 4 HOH B 1 2001 2001 HOH HOH . J 4 HOH B 2 2002 2002 HOH HOH . J 4 HOH B 3 2003 2003 HOH HOH . J 4 HOH B 4 2004 2004 HOH HOH . J 4 HOH B 5 2005 2005 HOH HOH . J 4 HOH B 6 2006 2006 HOH HOH . J 4 HOH B 7 2007 2007 HOH HOH . J 4 HOH B 8 2008 2008 HOH HOH . J 4 HOH B 9 2009 2009 HOH HOH . J 4 HOH B 10 2010 2010 HOH HOH . J 4 HOH B 11 2012 2012 HOH HOH . J 4 HOH B 12 2013 2013 HOH HOH . J 4 HOH B 13 2014 2014 HOH HOH . J 4 HOH B 14 2015 2015 HOH HOH . J 4 HOH B 15 2016 2016 HOH HOH . J 4 HOH B 16 2017 2017 HOH HOH . J 4 HOH B 17 2018 2018 HOH HOH . J 4 HOH B 18 2019 2019 HOH HOH . J 4 HOH B 19 2020 2020 HOH HOH . J 4 HOH B 20 2021 2021 HOH HOH . J 4 HOH B 21 2022 2022 HOH HOH . J 4 HOH B 22 2023 2023 HOH HOH . J 4 HOH B 23 2024 2024 HOH HOH . J 4 HOH B 24 2025 2025 HOH HOH . J 4 HOH B 25 2026 2026 HOH HOH . J 4 HOH B 26 2027 2027 HOH HOH . J 4 HOH B 27 2028 2028 HOH HOH . J 4 HOH B 28 2029 2029 HOH HOH . J 4 HOH B 29 2030 2030 HOH HOH . J 4 HOH B 30 2031 2031 HOH HOH . J 4 HOH B 31 2032 2032 HOH HOH . J 4 HOH B 32 2033 2033 HOH HOH . J 4 HOH B 33 2034 2034 HOH HOH . J 4 HOH B 34 2035 2035 HOH HOH . J 4 HOH B 35 2036 2036 HOH HOH . J 4 HOH B 36 2037 2037 HOH HOH . J 4 HOH B 37 2038 2038 HOH HOH . J 4 HOH B 38 2039 2039 HOH HOH . J 4 HOH B 39 2040 2040 HOH HOH . J 4 HOH B 40 2041 2041 HOH HOH . J 4 HOH B 41 2042 2042 HOH HOH . J 4 HOH B 42 2043 2043 HOH HOH . J 4 HOH B 43 2044 2044 HOH HOH . J 4 HOH B 44 2045 2045 HOH HOH . J 4 HOH B 45 2046 2046 HOH HOH . J 4 HOH B 46 2047 2047 HOH HOH . J 4 HOH B 47 2048 2048 HOH HOH . J 4 HOH B 48 2049 2049 HOH HOH . J 4 HOH B 49 2050 2050 HOH HOH . J 4 HOH B 50 2051 2051 HOH HOH . J 4 HOH B 51 2052 2052 HOH HOH . J 4 HOH B 52 2053 2053 HOH HOH . J 4 HOH B 53 2054 2054 HOH HOH . J 4 HOH B 54 2055 2055 HOH HOH . J 4 HOH B 55 2056 2056 HOH HOH . J 4 HOH B 56 2057 2057 HOH HOH . J 4 HOH B 57 2058 2058 HOH HOH . J 4 HOH B 58 2059 2059 HOH HOH . J 4 HOH B 59 2060 2060 HOH HOH . J 4 HOH B 60 2061 2061 HOH HOH . J 4 HOH B 61 2062 2062 HOH HOH . J 4 HOH B 62 2063 2063 HOH HOH . J 4 HOH B 63 2064 2064 HOH HOH . J 4 HOH B 64 2065 2065 HOH HOH . J 4 HOH B 65 2066 2066 HOH HOH . J 4 HOH B 66 2067 2067 HOH HOH . J 4 HOH B 67 2068 2068 HOH HOH . J 4 HOH B 68 2069 2069 HOH HOH . J 4 HOH B 69 2070 2070 HOH HOH . J 4 HOH B 70 2071 2071 HOH HOH . J 4 HOH B 71 2072 2072 HOH HOH . J 4 HOH B 72 2073 2073 HOH HOH . J 4 HOH B 73 2074 2074 HOH HOH . J 4 HOH B 74 2075 2075 HOH HOH . J 4 HOH B 75 2076 2076 HOH HOH . J 4 HOH B 76 2077 2077 HOH HOH . J 4 HOH B 77 2078 2078 HOH HOH . J 4 HOH B 78 2080 2080 HOH HOH . J 4 HOH B 79 2081 2081 HOH HOH . J 4 HOH B 80 2082 2082 HOH HOH . J 4 HOH B 81 2083 2083 HOH HOH . J 4 HOH B 82 2084 2084 HOH HOH . J 4 HOH B 83 2085 2085 HOH HOH . J 4 HOH B 84 2086 2086 HOH HOH . J 4 HOH B 85 2087 2087 HOH HOH . J 4 HOH B 86 2088 2088 HOH HOH . J 4 HOH B 87 2089 2089 HOH HOH . J 4 HOH B 88 2090 2090 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.167 _atom_site.Cartn_y -72.983 _atom_site.Cartn_z -0.484 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 40.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1000 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #