data_2Y48
#
_model_server_result.job_id            TBy_h_cxIHTKdcWq8NT1Gw 
_model_server_result.datetime_utc      '2024-11-08 16:54:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2y48 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":900}' 
#
_entry.id    2Y48 
#
_exptl.entry_id    2Y48 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2Y48 
_cell.length_a            119.17 
_cell.length_b            181.46 
_cell.length_c            234.44 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2Y48 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     2Y48 
_atom_sites.fract_transf_matrix[1][1]    0.008391 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005511 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004265 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        4 
_pdbx_nonpoly_scheme.mon_id           FAD 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      900 
_pdbx_nonpoly_scheme.auth_seq_num     900 
_pdbx_nonpoly_scheme.pdb_mon_id       FAD 
_pdbx_nonpoly_scheme.auth_mon_id      FAD 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 4 -6.473 68.824 88.211 1 39.15 ? PA FAD 900 A 1 
HETATM 2 O O1A FAD . . . D 4 -5.582 69.269 87.067 1 38.26 ? O1A FAD 900 A 1 
HETATM 3 O O2A FAD . . . D 4 -7.848 68.278 87.856 1 39.53 ? O2A FAD 900 A 1 
HETATM 4 O O5B FAD . . . D 4 -6.685 70.137 89.134 1 43.6 ? O5B FAD 900 A 1 
HETATM 5 C C5B FAD . . . D 4 -5.755 71.21 89.153 1 41.95 ? C5B FAD 900 A 1 
HETATM 6 C C4B FAD . . . D 4 -6.548 72.489 89.054 1 41.29 ? C4B FAD 900 A 1 
HETATM 7 O O4B FAD . . . D 4 -5.708 73.596 89.245 1 40.97 ? O4B FAD 900 A 1 
HETATM 8 C C3B FAD . . . D 4 -7.117 72.635 87.67 1 41.88 ? C3B FAD 900 A 1 
HETATM 9 O O3B FAD . . . D 4 -8.487 72.868 87.873 1 42.32 ? O3B FAD 900 A 1 
HETATM 10 C C2B FAD . . . D 4 -6.354 73.823 87.081 1 41.96 ? C2B FAD 900 A 1 
HETATM 11 O O2B FAD . . . D 4 -7.076 74.542 86.106 1 41.7 ? O2B FAD 900 A 1 
HETATM 12 C C1B FAD . . . D 4 -6.041 74.607 88.333 1 40.44 ? C1B FAD 900 A 1 
HETATM 13 N N9A FAD . . . D 4 -4.847 75.432 88.281 1 39.75 ? N9A FAD 900 A 1 
HETATM 14 C C8A FAD . . . D 4 -3.635 75.149 87.714 1 39.79 ? C8A FAD 900 A 1 
HETATM 15 N N7A FAD . . . D 4 -2.798 76.195 87.949 1 40.39 ? N7A FAD 900 A 1 
HETATM 16 C C5A FAD . . . D 4 -3.473 77.124 88.687 1 41.74 ? C5A FAD 900 A 1 
HETATM 17 C C6A FAD . . . D 4 -3.129 78.378 89.215 1 40.68 ? C6A FAD 900 A 1 
HETATM 18 N N6A FAD . . . D 4 -2.098 79.05 88.716 1 40.74 ? N6A FAD 900 A 1 
HETATM 19 N N1A FAD . . . D 4 -4.075 79.074 89.931 1 39.72 ? N1A FAD 900 A 1 
HETATM 20 C C2A FAD . . . D 4 -5.353 78.582 90.137 1 38.06 ? C2A FAD 900 A 1 
HETATM 21 N N3A FAD . . . D 4 -5.672 77.36 89.625 1 38.78 ? N3A FAD 900 A 1 
HETATM 22 C C4A FAD . . . D 4 -4.763 76.643 88.909 1 40.33 ? C4A FAD 900 A 1 
HETATM 23 N N1 FAD . . . D 4 -7.964 59.123 85.424 1 56.74 ? N1 FAD 900 A 1 
HETATM 24 C C2 FAD . . . D 4 -8.773 58.013 85.584 1 57.9 ? C2 FAD 900 A 1 
HETATM 25 O O2 FAD . . . D 4 -9.006 57.587 86.706 1 58.08 ? O2 FAD 900 A 1 
HETATM 26 N N3 FAD . . . D 4 -9.331 57.368 84.5 1 58.2 ? N3 FAD 900 A 1 
HETATM 27 C C4 FAD . . . D 4 -9.096 57.848 83.23 1 58.87 ? C4 FAD 900 A 1 
HETATM 28 O O4 FAD . . . D 4 -9.59 57.31 82.236 1 60.62 ? O4 FAD 900 A 1 
HETATM 29 C C4X FAD . . . D 4 -8.292 58.957 83.056 1 58.12 ? C4X FAD 900 A 1 
HETATM 30 N N5 FAD . . . D 4 -8.08 59.403 81.77 1 58.46 ? N5 FAD 900 A 1 
HETATM 31 C C5X FAD . . . D 4 -7.292 60.508 81.554 1 58.29 ? C5X FAD 900 A 1 
HETATM 32 C C6 FAD . . . D 4 -7.109 60.94 80.252 1 58.01 ? C6 FAD 900 A 1 
HETATM 33 C C7 FAD . . . D 4 -6.343 62.054 80.006 1 58.63 ? C7 FAD 900 A 1 
HETATM 34 C C7M FAD . . . D 4 -6.139 62.506 78.593 1 58.61 ? C7M FAD 900 A 1 
HETATM 35 C C8 FAD . . . D 4 -5.765 62.736 81.072 1 60.14 ? C8 FAD 900 A 1 
HETATM 36 C C8M FAD . . . D 4 -4.943 63.957 80.815 1 60.23 ? C8M FAD 900 A 1 
HETATM 37 C C9 FAD . . . D 4 -5.943 62.304 82.385 1 59.56 ? C9 FAD 900 A 1 
HETATM 38 C C9A FAD . . . D 4 -6.71 61.174 82.633 1 58.59 ? C9A FAD 900 A 1 
HETATM 39 N N10 FAD . . . D 4 -6.927 60.734 83.936 1 57.48 ? N10 FAD 900 A 1 
HETATM 40 C C10 FAD . . . D 4 -7.721 59.608 84.151 1 57.39 ? C10 FAD 900 A 1 
HETATM 41 C C1' FAD . . . D 4 -6.263 61.454 85.075 1 54.09 ? C1' FAD 900 A 1 
HETATM 42 C C2' FAD . . . D 4 -7.167 62.281 85.94 1 51.31 ? C2' FAD 900 A 1 
HETATM 43 O O2' FAD . . . D 4 -7.822 63.118 85.037 1 50.52 ? O2' FAD 900 A 1 
HETATM 44 C C3' FAD . . . D 4 -6.334 63.16 86.861 1 50.78 ? C3' FAD 900 A 1 
HETATM 45 O O3' FAD . . . D 4 -5.347 62.467 87.605 1 49.75 ? O3' FAD 900 A 1 
HETATM 46 C C4' FAD . . . D 4 -7.23 63.88 87.84 1 49.74 ? C4' FAD 900 A 1 
HETATM 47 O O4' FAD . . . D 4 -8.392 64.353 87.181 1 50.74 ? O4' FAD 900 A 1 
HETATM 48 C C5' FAD . . . D 4 -6.404 65.023 88.421 1 47.42 ? C5' FAD 900 A 1 
HETATM 49 O O5' FAD . . . D 4 -7.166 65.807 89.311 1 42.71 ? O5' FAD 900 A 1 
HETATM 50 P P FAD . . . D 4 -6.346 66.824 90.202 1 39.71 ? P FAD 900 A 1 
HETATM 51 O O1P FAD . . . D 4 -7.309 67.471 91.169 1 42.58 ? O1P FAD 900 A 1 
HETATM 52 O O2P FAD . . . D 4 -5.161 66.213 90.954 1 40.11 ? O2P FAD 900 A 1 
HETATM 53 O O3P FAD . . . D 4 -5.681 67.838 89.16 1 38.17 ? O3P FAD 900 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           96 
_model_server_stats.create_model_time_ms    73 
_model_server_stats.query_time_ms           358 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#