data_2Y4K # _model_server_result.job_id uhkT1pXQ_OXdgYX49zjmEA _model_server_result.datetime_utc '2024-11-08 08:37:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2y4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":504}' # _entry.id 2Y4K # _exptl.entry_id 2Y4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2Y4K _cell.length_a 149.646 _cell.length_b 149.646 _cell.length_c 154.112 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2Y4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,P 1 1 B,I,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 M N N ? 5 N N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 102 A ASP 102 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc2 C MG MG . A MG 400 1_555 D O2B GDP . A GDP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 C MG MG . A MG 400 1_555 D O2A GDP . A GDP 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc4 B OD1 ASP 102 B ASP 102 1_555 I MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc5 B OD2 ASP 102 B ASP 102 1_555 I MG MG . B MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc6 I MG MG . B MG 400 1_555 J O2A GDP . B GDP 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.089 ? metalc ? metalc7 I MG MG . B MG 400 1_555 J O2A GDP . B GDP 401 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.73 ? metalc ? metalc8 I MG MG . B MG 400 1_555 J O2B GDP . B GDP 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.348 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 2Y4K _atom_sites.fract_transf_matrix[1][1] 0.006682 _atom_sites.fract_transf_matrix[1][2] 0.003858 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 400 400 MG MG . D 3 GDP A 1 401 401 GDP GDP . E 4 CL A 1 402 402 CL CL . F 5 FMT A 1 501 501 FMT FMT . G 5 FMT A 1 502 502 FMT FMT . H 5 FMT A 1 503 503 FMT FMT . I 2 MG B 1 400 400 MG MG . J 3 GDP B 1 401 401 GDP GDP . K 4 CL B 1 402 402 CL CL . L 6 TRS B 1 501 501 TRS TRS . M 5 FMT B 1 502 502 FMT FMT . N 5 FMT B 1 503 503 FMT FMT . O 5 FMT B 1 504 504 FMT FMT . P 7 HOH A 1 2001 2001 HOH HOH . P 7 HOH A 2 2002 2002 HOH HOH . P 7 HOH A 3 2003 2003 HOH HOH . P 7 HOH A 4 2004 2004 HOH HOH . P 7 HOH A 5 2005 2005 HOH HOH . P 7 HOH A 6 2006 2006 HOH HOH . P 7 HOH A 7 2007 2007 HOH HOH . P 7 HOH A 8 2008 2008 HOH HOH . P 7 HOH A 9 2009 2009 HOH HOH . P 7 HOH A 10 2010 2010 HOH HOH . P 7 HOH A 11 2011 2011 HOH HOH . P 7 HOH A 12 2012 2012 HOH HOH . P 7 HOH A 13 2013 2013 HOH HOH . P 7 HOH A 14 2014 2014 HOH HOH . P 7 HOH A 15 2015 2015 HOH HOH . P 7 HOH A 16 2016 2016 HOH HOH . P 7 HOH A 17 2017 2017 HOH HOH . P 7 HOH A 18 2018 2018 HOH HOH . P 7 HOH A 19 2019 2019 HOH HOH . P 7 HOH A 20 2020 2020 HOH HOH . P 7 HOH A 21 2021 2021 HOH HOH . P 7 HOH A 22 2022 2022 HOH HOH . P 7 HOH A 23 2023 2023 HOH HOH . P 7 HOH A 24 2024 2024 HOH HOH . P 7 HOH A 25 2025 2025 HOH HOH . P 7 HOH A 26 2026 2026 HOH HOH . P 7 HOH A 27 2027 2027 HOH HOH . P 7 HOH A 28 2028 2028 HOH HOH . P 7 HOH A 29 2029 2029 HOH HOH . P 7 HOH A 30 2030 2030 HOH HOH . P 7 HOH A 31 2031 2031 HOH HOH . P 7 HOH A 32 2032 2032 HOH HOH . P 7 HOH A 33 2033 2033 HOH HOH . P 7 HOH A 34 2034 2034 HOH HOH . P 7 HOH A 35 2035 2035 HOH HOH . P 7 HOH A 36 2036 2036 HOH HOH . P 7 HOH A 37 2037 2037 HOH HOH . P 7 HOH A 38 2038 2038 HOH HOH . P 7 HOH A 39 2039 2039 HOH HOH . P 7 HOH A 40 2040 2040 HOH HOH . P 7 HOH A 41 2041 2041 HOH HOH . P 7 HOH A 42 2042 2042 HOH HOH . P 7 HOH A 43 2043 2043 HOH HOH . P 7 HOH A 44 2044 2044 HOH HOH . P 7 HOH A 45 2045 2045 HOH HOH . P 7 HOH A 46 2046 2046 HOH HOH . P 7 HOH A 47 2047 2047 HOH HOH . P 7 HOH A 48 2048 2048 HOH HOH . P 7 HOH A 49 2049 2049 HOH HOH . P 7 HOH A 50 2050 2050 HOH HOH . P 7 HOH A 51 2051 2051 HOH HOH . P 7 HOH A 52 2052 2052 HOH HOH . P 7 HOH A 53 2053 2053 HOH HOH . P 7 HOH A 54 2054 2054 HOH HOH . P 7 HOH A 55 2055 2055 HOH HOH . P 7 HOH A 56 2056 2056 HOH HOH . P 7 HOH A 57 2057 2057 HOH HOH . P 7 HOH A 58 2058 2058 HOH HOH . P 7 HOH A 59 2059 2059 HOH HOH . P 7 HOH A 60 2060 2060 HOH HOH . P 7 HOH A 61 2061 2061 HOH HOH . P 7 HOH A 62 2062 2062 HOH HOH . P 7 HOH A 63 2063 2063 HOH HOH . P 7 HOH A 64 2064 2064 HOH HOH . P 7 HOH A 65 2065 2065 HOH HOH . P 7 HOH A 66 2066 2066 HOH HOH . P 7 HOH A 67 2067 2067 HOH HOH . P 7 HOH A 68 2068 2068 HOH HOH . P 7 HOH A 69 2069 2069 HOH HOH . P 7 HOH A 70 2070 2070 HOH HOH . Q 7 HOH B 1 2001 2001 HOH HOH . Q 7 HOH B 2 2002 2002 HOH HOH . Q 7 HOH B 3 2003 2003 HOH HOH . Q 7 HOH B 4 2004 2004 HOH HOH . Q 7 HOH B 5 2005 2005 HOH HOH . Q 7 HOH B 6 2006 2006 HOH HOH . Q 7 HOH B 7 2007 2007 HOH HOH . Q 7 HOH B 8 2008 2008 HOH HOH . Q 7 HOH B 9 2009 2009 HOH HOH . Q 7 HOH B 10 2010 2010 HOH HOH . Q 7 HOH B 11 2011 2011 HOH HOH . Q 7 HOH B 12 2012 2012 HOH HOH . Q 7 HOH B 13 2013 2013 HOH HOH . Q 7 HOH B 14 2014 2014 HOH HOH . Q 7 HOH B 15 2015 2015 HOH HOH . Q 7 HOH B 16 2016 2016 HOH HOH . Q 7 HOH B 17 2017 2017 HOH HOH . Q 7 HOH B 18 2018 2018 HOH HOH . Q 7 HOH B 19 2019 2019 HOH HOH . Q 7 HOH B 20 2020 2020 HOH HOH . Q 7 HOH B 21 2021 2021 HOH HOH . Q 7 HOH B 22 2022 2022 HOH HOH . Q 7 HOH B 23 2023 2023 HOH HOH . Q 7 HOH B 24 2024 2024 HOH HOH . Q 7 HOH B 25 2025 2025 HOH HOH . Q 7 HOH B 26 2026 2026 HOH HOH . Q 7 HOH B 27 2027 2027 HOH HOH . Q 7 HOH B 28 2028 2028 HOH HOH . Q 7 HOH B 29 2029 2029 HOH HOH . Q 7 HOH B 30 2030 2030 HOH HOH . Q 7 HOH B 31 2031 2031 HOH HOH . Q 7 HOH B 32 2032 2032 HOH HOH . Q 7 HOH B 33 2033 2033 HOH HOH . Q 7 HOH B 34 2034 2034 HOH HOH . Q 7 HOH B 35 2035 2035 HOH HOH . Q 7 HOH B 36 2036 2036 HOH HOH . Q 7 HOH B 37 2037 2037 HOH HOH . Q 7 HOH B 38 2038 2038 HOH HOH . Q 7 HOH B 39 2039 2039 HOH HOH . Q 7 HOH B 40 2040 2040 HOH HOH . Q 7 HOH B 41 2041 2041 HOH HOH . Q 7 HOH B 42 2042 2042 HOH HOH . Q 7 HOH B 43 2043 2043 HOH HOH . Q 7 HOH B 44 2044 2044 HOH HOH . Q 7 HOH B 45 2045 2045 HOH HOH . Q 7 HOH B 46 2046 2046 HOH HOH . Q 7 HOH B 47 2047 2047 HOH HOH . Q 7 HOH B 48 2048 2048 HOH HOH . Q 7 HOH B 49 2049 2049 HOH HOH . Q 7 HOH B 50 2050 2050 HOH HOH . Q 7 HOH B 51 2051 2051 HOH HOH . Q 7 HOH B 52 2052 2052 HOH HOH . Q 7 HOH B 53 2053 2053 HOH HOH . Q 7 HOH B 54 2054 2054 HOH HOH . Q 7 HOH B 55 2055 2055 HOH HOH . Q 7 HOH B 56 2056 2056 HOH HOH . Q 7 HOH B 57 2057 2057 HOH HOH . Q 7 HOH B 58 2058 2058 HOH HOH . Q 7 HOH B 59 2059 2059 HOH HOH . Q 7 HOH B 60 2060 2060 HOH HOH . Q 7 HOH B 61 2061 2061 HOH HOH . Q 7 HOH B 62 2062 2062 HOH HOH . Q 7 HOH B 63 2063 2063 HOH HOH . Q 7 HOH B 64 2064 2064 HOH HOH . Q 7 HOH B 65 2065 2065 HOH HOH . Q 7 HOH B 66 2066 2066 HOH HOH . Q 7 HOH B 67 2067 2067 HOH HOH . Q 7 HOH B 68 2068 2068 HOH HOH . Q 7 HOH B 69 2069 2069 HOH HOH . Q 7 HOH B 70 2070 2070 HOH HOH . Q 7 HOH B 71 2071 2071 HOH HOH . Q 7 HOH B 72 2072 2072 HOH HOH . Q 7 HOH B 73 2073 2073 HOH HOH . Q 7 HOH B 74 2074 2074 HOH HOH . Q 7 HOH B 75 2075 2075 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . O 5 59.996 -41.23 2.969 1 45.8 ? C FMT 504 B 1 HETATM 2 O O1 FMT . . . O 5 61.116 -41.658 3.339 1 43.61 ? O1 FMT 504 B 1 HETATM 3 O O2 FMT . . . O 5 59.813 -40.566 1.911 1 47.62 ? O2 FMT 504 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 3 #